TCONS_00018737-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018737-protein
Unique Name	TCONS_00018737-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	501

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018737-protein ID=TCONS_00018737-protein|Name=TCONS_00018737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
MRNTTPRFFSINAGTSSLGFTVAWFLTWXPDSFQLMREPLHSDLPWPGFL
LGQTTVSIWYWCSDQVIVQRSLAAKSLSHAQGGTLLASALKLFPLYIMVM
PGMISRVLFPNEVMCVDPDKCFEICESRTGCTNIALPLMVLRVMPSGLRG
MMLAVMMAALMSDLTSIFNSAATLFTMDIYQSVRKKADTGELMVVGRLFI
VVLCVFAVLWVPLLKELQGGQLFLYIQSVSSYLSPPIAAVYCLALLWKRS
NEKGTFWGMMVGFFAGITRMILDFSYPAPACNEVDTRPTIIKNVHFFYVA
LILFVLTIIVCIVVSLLTEPPSEEMIIRTTVWTKHDQTIRSDELEEEKQH
NENDQLERTKRTSSKISPQNYESVELRSKEDQASDNQDQQGVESGTEVEQ
PEPVTCWKRVFYFICGLSNESAPEQQQSADEQRNHFQEVISLQQNPRVKK
LLTGASIFSILVSVSLLILYTVPDGGPTRPTIDIPYLPFVNNGTRPYKID
L

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010487	XLOC_010487	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018737	TCONS_00018737	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 339..359
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 28..262 e-value: 1.1E-68 score: 231.9
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 30..262 e-value: 1.2E-73 score: 246.5
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 37..276 score: 35.561

Blast

[Close]

BLAST of TCONS_00018737-protein vs. Swiss-Prot (Human)
Match: SC5A9 (Sodium/glucose cotransporter 4 OS=Homo sapiens GN=SLC5A9 PE=1 SV=2)

HSP 1 Score: 404.06 bits (1037), Expect = 1.976e-134
Identity = 200/419 (47.73%), Postives = 280/419 (66.83%), Query Frame = 0

Query:   30 PDSFQLMREPLHSDLPWPGFLLGQTTVSIWYWCSDQVIVQRSLAAKSLSHAQGGTLLASALKLFPLYIMVMPGMISRVLFPNEVMCVDPDKCFEICESRTGCTNIALPLMVLRVMPSGLRGMMLAVMMAALMSDLTSIFNSAATLFTMDIYQSVRKKADTGELMVVGRLFIVVLCVFAVLWVPLLKELQGGQLFLYIQSVSSYLSPPIAAVYCLALLWKRSNEKGTFWGMMVGFFAGITRMILDFSYPAPACNEVDTRPTIIKNVHFFYVALILFVLTIIVCIVVSLLTEPPSEEMIIRTTVWTKHDQTIRSDELEEEKQHNENDQLERTKRTSSKISPQNYESVELRSKEDQASDNQDQQGVESGTEVEQPE-PVTCWKRVFY-FICGLSNESAPEQQQSADEQRNHFQEVISLQQNP 446
            PD+F ++R+P+  D+PWPG + G T ++ W WC+DQVIVQRSL+AKSLSHA+GG++L   LK+ P++ +VMPGMISR LFP+EV CVDPD C  IC +R GC+NIA P +V+ +MP GLRG+M+AV+MAALMS LTSIFNS++TLFT+D++Q  R+K+   ELMVVGR+F+V L V ++LW+P+++    GQLF YIQ+V+SYL+PPI A++ LA+  KR  E G FWG++ G   G+ RMIL+FSYPAPAC EVD RP ++K+ H+ Y A++L  LT IV ++VSL T P  EE + R T WT++       ELE+E   +  +  ER              + E  +    A ++   Q        EQPE P   W ++ + + CGLS    PEQ  S  E+    Q++ S+++ P
Sbjct:  264 PDAFHILRDPVSGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKILPMFFIVMPGMISRALFPDEVGCVDPDVCQRICGARVGCSNIAYPKLVMALMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRRKSTEQELMVVGRVFVVFLVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLKDFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPL---SELEKEAHESTPEISER-------------PAGECPAGGGAAENSSLGQ--------EQPEAPSRSWGKLLWSWFCGLSG--TPEQALSPAEKAALEQKLTSIEEEP 656

The following BLAST results are available for this feature:

BLAST of TCONS_00018737-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018737-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A9	1.976e-134	47.73	Sodium/glucose cotransporter 4 OS=Homo sapiens GN=...	[more]

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TCONS_00018737-protein (polypeptide) - C. hemisphaerica