TCONS_00018736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018736
Unique NameTCONS_00018736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018736 ID=TCONS_00018736|Name=TCONS_00018736|organism=Clytia hemisphaerica|type=transcript|length=485bp
CGAtttgattttccatttttttgtacattttatatactttttgtCACTTA
GTTTGTAGTCGTAGTGTagaataaagattttttatcaaaaattctttgaa
aatttcaatctgAAAATGCGCGAATGTATTTCTGTTCATCTTGGTCAAGC
TGGCATACAAATAGGGAATGCGTGTTGGGAACTATATTGTTTGGAGCATG
GAATCCAACCTGACGGTCAAATGCCTTCAGACAAAACTATTGGAGGTGGA
GATGATTCATTTAACACTTTCTTCAGTGAAACTGGAGGAGGAAAACACGT
TCCAAGAGCTATATTCACCGACCTTGAACCGACGGTAGTGGACGAGGTTA
GAAGTGGAACATACCGAAAACTCTTCCACCCGGACCAACTGATCTGCGGA
AGAGAAGATGCAGCCAATAATTATGCTAGAGGACATTACACTGTTGGAAA
AGAATTGATCGATGTTTTGGTTGACCGAATTAGAC
Run BLAST on NCBI

protein sequence of TCONS_00018736-protein

>TCONS_00018736-protein ID=TCONS_00018736-protein|Name=TCONS_00018736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MRECISVHLGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGGGKHVPRAIFTDLEPTVVDEVRSGTYRKLFHPDQLICGREDAA
NNYARGHYTVGKELIDVLVDRIR
Run BLAST on NCBI

transcript from alignment at sc0000305:47494..51890-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018736 ID=TCONS_00018736|Name=TCONS_00018736|organism=Clytia hemisphaerica|type=transcript|length=4397bp|location=Sequence derived from alignment at sc0000305:47494..51890- (Clytia hemisphaerica)
CGATTTGATTTTCCATTTTTTTGTACATTTTATATACTTTTTGTCACTTA
GTTTGTAGTCGTAGTGTAGAATAAAGATTTTTTATCAAAAATTCTTTGAA
AATTTCAATCTGAAAATGGTATGTATAATCTCACATTTTTTTTCAAAAAC
TCCTTTTTTAAAAGAAAATATGTATATAAGAACAGAAAAATTAACAAAAT
CTGTGTCTAGACGAGTCCCAGGTAGGGTCACAAAAACACCAAAATAGAAA
AATCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAGTA
GAAAATTTTGGAACTTCGGTCCCATTCAGGGTCACTTTTTTCGCAAATTT
CGAGTCCCGCGTAGGGTCCATTTTTCGAACCTCAGCGAAGCAACCCCGTC
GGTCGACAAGGGTAGTACCCCCCGGGTGGTTTACCTTCTTTGAAGGAATG
ATAAGGGAATCTAATATCCAATAGAGCTCAGCAATAGAGGTTTTCATGTT
TTTTTAAGTTACATAACAAACCAACGTTCGAATTGCGTAAGCGATCACCT
CTACAGATTCAAACGTTTGCTTCCATAATGGTGGAAATTACGTAACTATG
CAAAAGATGAAACAGATGTCTTTTAACAATCTGGGGATTCTTGTAATTTC
GTTTCGAAGTGCTTTACCCCGTTTCCACACTACATGTTTTTTTTATAAGC
AAGTGTATGCCCCTTGGTCAGGCTTGTGTATGCTTAAAAGTTTTTGAAGC
ATCCAGGCATAGTTTATGCTTATTATATGCTTATGAATCATGCTTATGAT
TCCCCTCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTATGTAAAAATTT
GTTCAGATTTTGGGAGCAGTGGATTGTAGGAAACCGTGGAAAGTCTTTTT
TTTTTACTTGACCTCTACCAAACCTTTTTAAACAGATAAAAATGACAACT
GGAAAAATATTTTAGGCTAACATATATGCTTATATTATGTTTAGGAATTC
TGCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAA
AACATGTATATTTATTTGATCAATTTATTTCAATTCAGAACACTTTTTCG
TTGACCAAACAGTGAGATATTCGATAATACTAAGTGCAAGTTTTCGAGAA
TTCTTTTATTTTTTGGCCATTTTGTTAAAATTCCGAATTGTAAGAATCGA
ACAAAAATGTCTATTTCTGATACGAAATCGATTTTAGGATTGCGAAATAC
CGGATAGATTTGGTAAGGGGTTACCGAAATTCCAAAGTAAAAACGGTCGA
TTCCTGCAATACCGAAATAGTTTTCATTACCAAACCTTTATTTTCATCCA
CCTTGTTCGTGAGCTGCAATCAGTGCCAAAATATTTGGCTGTAAACAGTG
ATTTTCATTACTGTTTATGAAAGCCCTGGTCCCCCTAAACACCCCTGTCT
CAGTGCCCCGGTGGAACCTTTTCCCTCAGTGGGGATGAAAATTTCTATCG
AAATTGCAATGGGGATAGAAAATCTATTGTTTCCAGCTCAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTGGAGTCCAATTTTTTCCATTCAATTTTCAATGGGGA
TAGAATCATAGGGAAATTTCCCAGTGGGGTTGAAAATGTAGGGTATTTTT
TCCATCGGGGACGATTTTTTGGCCTATTTTTCCACCGGGGCGGGGGGTCC
ACCGGGTCTCTGACATAGGGGTGTCCCTAACTTTAATGGTTGGAGTTGCT
GTTTGTGGCTTACTGCAAACATATTATTGCACTGATCGTAGATTCTCTGT
ATTTTATCATGTAATTTATAGCGCGAATGTATTTCTGTTCATCTTGGTCA
AGCTGGCATACAAATAGGGAATGCGTGTTGGGAACTATATTGTTTGGAGC
ATGGAATCCAACCTGACGGTCAAATGCCTTCAGACAAAACTATTGGAGGT
GGAGATGATTCATTTAACACTTTCTTCAGTGAAACTGGAGGAGGAAAACA
CGTTCCAAGAGCTATATTCACCGACCTTGAACCGACGGTAGTGGGTAAGA
AACTTTTTATAAAGTTTTCATTCATGTTTTCAATAATATATAATTTTCAG
GCTAAACTATCGGCTAAAAAAGTCTTTTGTTCGAACCTTCAGCAATTCTT
TTAACCTTCAACGATTCTGCTAAACGTTAAAACAAAGAGTTTTCCAACCT
TAACAGATTTTTCCAGAATCTTCCAGCCTGGAAGGGTTGTGTTTCTTTCT
ATTTTTAACAGTTAGAGCTTTCGTATGGAAGTATCGTATCAAAAATTACC
GTGAAAAGCACAGGTCGAAATCATATATCGACGCTGTGCCGACGAATCGA
GATTCTATTCAGCGCGAAATCAACGAAGACAAAAGTAACCATGACGACCA
TCCAAGATCTTGGATGAAGTTCAAAGTTGATATTTTTCTTTCCGTCGTTG
AAAACACAACTAAAAAATATCATCAATGCTTTAGAGTCAGTGATAGAGAA
TCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAGTGACATTTC
CATAATTAATAATTTAGTAATTACTGTTATACATTTGAGGATAATCTAAA
AGATTTCTTTCGAAATAAACTCATTTCAATTACACTTGGAGGTTTCTGGG
GAATTCGCCAATAGTAAACTGCATACTTATACCGAAAGCAGCCGGCGAGG
CAACCTTTTTTTTCGATGTGTTCTGAGAGCATGTTTCAGCTAGAAATTTT
GATCTGTTCTGATCAGATCTTCGAAAATTAATCAGCTAGAAATATGATGT
GTTCTGACGAGACAGGGGTATAATCAAAGTCATCTAACTTCATCTAACGT
GTTCTTGTTGTCTAGAAAGCTTCAAAACACATCTTTTAAGGAGACGGGTA
TAATCAAGAGAAAATTGATGTAATCTTGTTGCCTAGTAACCCTAGAAATT
TTCAGAACACATTTTTCGTGGAGAAAAACAAATATCTTACAAGTTTATCT
TGGCAAACGGTTTTTCCTAGATTTTAGAACACATCAAACCATAAAGTAGT
GATAAGTTTAGAGAGACAAATAGTGCGGTAAAGGTTTCCTAGAAATAAGA
ACACATCGTTTGTATAAAAAATTGAAAGGTCATAACATTTGGTCTCCTAG
AAAATAAGAACACATATTTCTAAAAAATCTCTCCGCCGGCTGCTTCTGTT
ATACAGTCTGCTAGACATTAATAAGGTAATATTTGCTCTTCATCTTTGAT
TCTTCCTAAATTAATTAGATTGACACATGCGCGATAAAATTTCTATTATT
GGTCTTCAGAGGTTAATATATTCTTTGAAAACTTAACCTCCGATACTCAG
AGTAATCAAAAATGGTTTAGTGATAAAAAAATGATAGGTGGGGAACACAT
TTCTTTTATAAGAACCAGTAATTTTGGCTTGGGCTGGGGTGTTCTTAAAT
TTTTGATTTTTTAGGCTTAAATGTTCTTACGGTGTTCTTAAAACTTAGTT
TCTTTTATTTAAAAACTAAAAATATGTTCAAAAACTGTCATACAATCAGT
ACTTTCTAAGTAATTTCTGAAATCTCAGGCTTAGGATTGTTCTTAATTTG
TTCTTAGGTTTTTACCAATTTTCAGCCTCGTGCTCTTATAAGATTATTCT
TACCGCAAAAAAAGTGTAACATAAGAGGAAGGAAAATCAACTTATTATAA
TAAAATTCTTGTTTTAAAGGTTTTGTTTTTACATAAGTGTTCCCGTTTCA
TATCAGACACATATTTTATATCAGGACAGTGTCTCCCTATTGTTATATTG
TGCTGATATAAGCAAAAAATGCCTTTCTTTTTTCTCTTTCTGACCAATCT
TGCTCCACATCCGTATCAATTCAAAATCAAAAACTTGTAAATTAAAATTG
ACGAGTAAGAAAACGATATCAATCTTATTTAAAAACAAAACCTTTACCTT
TAGACGAGGTTAGAAGTGGAACATACCGAAAACTCTTCCACCCGGACCAA
CTGATCTGCGGAAGAGAAGATGCAGCCAATAATTATGCTAGAGGACATTA
CACTGTTGGAAAAGAATTGATCGATGTTTTGGTTGACCGAATTAGAC

Coding sequence (CDS) from alignment at sc0000305:47494..51890-

>TCONS_00018736 ID=TCONS_00018736|Name=TCONS_00018736|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000305:47494..51890- (Clytia hemisphaerica)
ACGAGGTTAGAAGTGGAACATACCGAAAACTCTTCCACCCGGACCAACTG
ATCTGCGGAAGAGAAGATGCAGCCAATAATTATGCTAGAGGACATTACAC
TGTTGGAAAAGAATTGATCGATGTTTTGGTTGACCGAATTAGACGCGAAT
GTATTTCTGTTCATCTTGGTCAAGCTGGCATACAAATAGGGAATGCGTGT
TGGGAACTATATTGTTTGGAGCATGGAATCCAACCTGACGGTCAAATGCC
TTCAGACAAAACTATTGGAGGTGGAGATGATTCATTTAACACTTTCTTCA
GTGAAACTGGAGGAGGAAAACACGTTCCAAGAGCTATATTCACCGACCTT
GAACCGACGGTAGTGGATGACGAGGTTAGAAGTGGAACATACCGAAAACT
CTTCCACCCGGACCAACTGATCTGCGGAAGAGAAGATGCAGCCAATAATT
ATGCTAGAGGACATTACACTGTTGGAAAAGAATTGATCGATGTTTTGGTT
GACCGAATTAGACGCGAATGTATTTCTGTTCATCTTGGTCAAGCTGGCAT
ACAAATAGGGAATGCGTGTTGGGAACTATATTGTTTGGAGCATGGAATCC
AACCTGACGGTCAAATGCCTTCAGACAAAACTATTGGAGGTGGAGATGAT
TCATTTAACACTTTCTTCAGTGAAACTGGAGGAGGAAAACACGTTCCAAG
AGCTATATTCACCGACCTTGAACCGACGGTAGTGGATGACGAGGTTAGAA
GTGGAACATACCGAAAACTCTTCCACCCGGACCAACTGATCTGCGGAAGA
GAAGATGCAGCCAATAATTATGCTAGAGGACATTACACTGTTGGAAAAGA
ATTGATCGATGTTTTGGTTGACCGAATTAGACGCGAATGTATTTCTGTTC
ATCTTGGTCAAGCTGGCATACAAATAGGGAATGCGTGTTGGGAACTATAT
TGTTTGGAGCATGGAATCCAACCTGACGGTCAAATGCCTTCAGACAAAAC
TATTGGAGGTGGAGATGATTCATTTAACACTTTCTTCAGTGAAACTGGAG
GAGGAAAACACGTTCCAAGAGCTATATTCACCGACCTTGAACCGACGGTA
GTGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010486XLOC_010486Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018736-proteinTCONS_00018736-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018736-exon-sc0000305-1575043694:51773..51890TCONS_00018736-exon-sc0000305-1575043694:51773..51890Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1575043694:49547..49769TCONS_00018736-exon-sc0000305-1575043694:49547..49769Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1575043694:47494..47637TCONS_00018736-exon-sc0000305-1575043694:47494..47637Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1510915933:51773..51890TCONS_00018736-exon-sc0000305-1510915933:51773..51890Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1510915933:49547..49769TCONS_00018736-exon-sc0000305-1510915933:49547..49769Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1510915933:47494..47637TCONS_00018736-exon-sc0000305-1510915933:47494..47637Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1491911889:51773..51890TCONS_00018736-exon-sc0000305-1491911889:51773..51890Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1491911889:49547..49769TCONS_00018736-exon-sc0000305-1491911889:49547..49769Clytia hemisphaericaexon
TCONS_00018736-exon-sc0000305-1491911889:47494..47637TCONS_00018736-exon-sc0000305-1491911889:47494..47637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:47494..51890 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385628	0.125349	1.16434	0	0	0.136981	0.165262	0.154716	0.649922	0	0.260462	0.256826	13.2509	13.4061	5.62028	4.22983	1.54394	2.67045	27.602	13.2979	12.3039	12.0029	4.12676	8.5756	5.10639	3.8183	1.05754	1.50485	0.142672	0.290721
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
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BLAST of TCONS_00018736 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 2.686e-78
Identity = 106/123 (86.18%), Postives = 120/123 (97.56%), Query Frame = 2 
Query:  116 MRECISVHLGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGGGKHVPRAIFTDLEPTVVDEVRSGTYRKLFHPDQLICGREDAANNYARGHYTVGKELIDVLVDRIR 484
            MRECIS+H+GQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG GKHVPRA+F DLEPTVVDEVR+GTYR+LFHP+QLI G+EDAANNYARGHYT+GKE++D+++DRIR
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 123
The following BLAST results are available for this feature:
BLAST of TCONS_00018736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C2.686e-7886.18Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
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