TCONS_00018736-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018736-protein
Unique NameTCONS_00018736-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018736-protein ID=TCONS_00018736-protein|Name=TCONS_00018736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MRECISVHLGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGGGKHVPRAIFTDLEPTVVDEVRSGTYRKLFHPDQLICGREDAA
NNYARGHYTVGKELIDVLVDRIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010486XLOC_010486Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018736TCONS_00018736Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 120..123
score: 40.15
coord: 18..33
score: 95.27
coord: 45..58
score: 79.71
coord: 88..101
score: 76.41
IPR000217TubulinPRINTSPR01161TUBULINcoord: 53..72
score: 64.53
coord: 10..30
score: 69.07
coord: 95..106
score: 62.68
coord: 108..123
score: 34.68
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..123
e-value: 3.4E-53
score: 180.2
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..123
e-value: 4.8E-32
score: 111.7
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..123

Blast
[Close]
BLAST of TCONS_00018736-protein vs. Swiss-Prot (Human)
Match: TBA1B (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.344e-80
Identity = 106/123 (86.18%), Postives = 120/123 (97.56%), Query Frame = 0 
Query:    1 MRECISVHLGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGGGKHVPRAIFTDLEPTVVDEVRSGTYRKLFHPDQLICGREDAANNYARGHYTVGKELIDVLVDRIR 123
            MRECIS+H+GQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG GKHVPRA+F DLEPTV+DEVR+GTYR+LFHP+QLI G+EDAANNYARGHYT+GKE+ID+++DRIR
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR 123
The following BLAST results are available for this feature:
BLAST of TCONS_00018736-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1B2.344e-8086.18Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
back to top