|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018728 ID=TCONS_00018728|Name=TCONS_00018728|organism=Clytia hemisphaerica|type=transcript|length=1626bp
GATGAGCCAAATTATGCTCTTGGgaaaatcaTATCCGAAACACCATAAAG
AGTGTGAAGACATTATGACGAACGAACAACAACAAAGCCTcgctttcaaa
aataaaaagtttcgTCGAAGAAGTTTAGATGAGAGTTTGATTAATCCAAT
CAAGGCGTTGGTCGGGTCAGGACGAAATCGCCGACAATCGACAAATGACG
CTGCTTTTCAACgtggaaatttattttataattcTGATCGGCGACGTAAG
AAAAGTGATCacgaaattttcgcgagatttcAAGATAcaacaaaagagag
aattcgaACAGCCGTTTCGAGCGATACAATGCCTGTTCGTAAGAATACTC
CAACCATGTTACGAAGAATCTCGAAACATCTTATCCGAGCTTATTCCGAA
GCTGAAAAACGAAACTCGATTACAGAGCTGCCAAACGAAAACGATGAATC
TACAGTCAAGAGCAATCGAGAATCTCCCCTCATATTTAACAAAGGAAACG
ACTCACCTTTACTTTTACGACAACAGACCAGCAAAAGTTTTGATACTTCT
TCGTTAAGTACGACAGACTCCGGTATCGAATCCAGAGACGATAAAATGGT
TTCGTCAGATGAGCGCAGCGATGACGATGAGAATCTGTGTAAAATTCCGA
ACAATATGTGTAAATCACAGAACGCAATCCCGCGTAGTTTCTCTTACGAT
GATTTAACAAAAAATAACGAGAAAAGTCAAGATTTAACGGACCATACAAA
TAAAACACCCGTTCGTAGACAGTACTCGTTACGAGAAGAACGCGTAAATC
AGATCAACTCATCTGTTGCTCCAAGCCCTGTATTCTCACAGAAAAGTATT
GAAAAACTGAACAACAGTCGAATTGCGTTACAGAAAGGTTCAGATAATTA
CAGTAGCGATGAAAAGATCTCACATACTAAATCGAAAGGGTCtcgtaaaa
aaaagaaaatcttgcaACCTATCGTGAATAAGATTCGTAAAGTTTCGAGA
AGCGAGACTTCGCCACaacaacaaaaacttttaatgaTTGACAGCAACCG
TTTACATCATATTGTCATGGAGATTATAAgcgagaaaatgaaaaagttga
CGTATGACCATAAACAATCAAGTGATCGGTGCCGTATGATTAGTACGACT
TTAGAAAATACTTTAAAGCTACGTCTCGGTTCGCAACCCGGTAATCCGGA
ATACAAAATCATTGCTGTTGTTTACATAGGAGAGACACGTGATCAAGGGA
TATGTTTTGCAACGCAATGCAGTTACGTCCCACAACAAGACTTGTTTACA
ACGGCGACGTATCAGAACAATGAAATGTACGTGTGCGCAACCGTAATGGC
TTCTCGTATGGATGGTAATTGACGGGCGTGGATATTTATAACAGTCTCGG
CAAAGTAAAATACtcggttttctttttataagaatagtgtactttggatg
agggtcaagtattcttaagaaagtgccaaaattgagaaatgatcaatttg
agagttttggacttttgagtaaacatttgggttaaaactacatttcttcc
tcaacaaaataaaaattcagcAAAGCTTTAAGTTTattttggatgatttt
ttttgtaaattttgtttttcaccAGA Run BLAST on NCBI transcript from alignment at sc0000305:305853..308562+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018728 ID=TCONS_00018728|Name=TCONS_00018728|organism=Clytia hemisphaerica|type=transcript|length=2710bp|location=Sequence derived from alignment at sc0000305:305853..308562+ (Clytia hemisphaerica)
GATGAGCCAAATTATGCTCTTGGGTAAGGTTAAAGGATATTCTATATTTT
gcctttttatgattttttttataaatattttgcaaaatacCATTTTTGTC
CCTTGTATGGGGGTGTGGTGCTAAACCTCTGTTGTTTTACTTGAAACTCG
CACGGTTAGGTCAGAAGGTTGACTTTTTTAAGCCGATGCAATGGCGATAA
CGGGATTGAGAATATCTTGTATTTATTGGGTTAAATTTTCAATTCCCATT
GTTTACAGCATGCTTCGATTTTTAAGCTGATTTTTCTTGTCTATCGGGTT
TGTAACACGGTAGTGTATTGCCCTGTTGAGTAAAACATTGTTCATACAGG
CTAATTAGGATGAATAAGAACAACCTTCCTTTGTTTTGACAATAAACACA
AAGTACTGTACGAAACAATGACACACAATATTATGTTTTTTGCCACTTGA
CTAAAAATTTGCTTTCTTCGAGGCCCTCTTACTGCCTCTTATTCATTATT
CTTTGTTTAGCATTCATTTAACATCCATCTGACATTCAAAGAAGGCTGTT
TATGCAATAGGGTCATGTTTCGTTTTGGGGAAATGATGAGTTGTGAAGTT
GAGTCAGTTTTGTTCTCTGTACTTCCCATTTGTTGTTGATAGTTTAAGAA
GTAGTGTTCTGGTGTTCGTGTGTCGTGTTGGCCAATTCTTGTTAAGTTCT
TACGCAACTGATTATTATTCTATTTTTAAGATTCGAAGATTCTATTGTTC
TTGATTATTTTGCGAAATGTAATTCCAGTTTGTATTGtgatatttttgtg
aaattaatTGGCAGCAAATTCTGGCGCACCTCGATATATTCCTTTAACAC
CAACAATTGACGAATTGAGGAAATTAATAGTAAGATGCTATATAAAGGCC
AAGGTCTTCTAACAGGTTAAAAACGCATCAAAACACCTTTAAAGGAAGGG
GGTTAACACAGTCACGAGCACGTGCCTTTTGTAGCAATTTCACAACAACT
AAAAAAGTTTCTCACAGGAAAACTGATTCCTTTGCCTTTGCTTTTAGGTT
GACATATATGGGAGTAAGCAGTTCATTGAcaatttgttacttttttttct
ttttcaggaaaatcaTATCCGAAACACCATAAAGAGTGTGAAGACATTAT
GACGAACGAACAACAACAAAGCCTcgctttcaaaaataaaaagtttcgTC
GAAGAAGTTTAGATGAGAGTTTGATTAATCCAATCAAGGCGTTGGTCGGG
TCAGGACGAAATCGCCGACAATCGACAAATGACGCTGCTTTTCAACgtgg
aaatttattttataattcTGATCGGCGACGTAAGAAAAGTGATCacgaaa
ttttcgcgagatttcAAGATAcaacaaaagagagaattcgaACAGCCGTT
TCGAGCGATACAATGCCTGTTCGTAAGAATACTCCAACCATGTTACGAAG
AATCTCGAAACATCTTATCCGAGCTTATTCCGAAGCTGAAAAACGAAACT
CGATTACAGAGCTGCCAAACGAAAACGATGAATCTACAGTCAAGAGCAAT
CGAGAATCTCCCCTCATATTTAACAAAGGAAACGACTCACCTTTACTTTT
ACGACAACAGACCAGCAAAAGTTTTGATACTTCTTCGTTAAGTACGACAG
ACTCCGGTATCGAATCCAGAGACGATAAAATGGTTTCGTCAGATGAGCGC
AGCGATGACGATGAGAATCTGTGTAAAATTCCGAACAATATGTGTAAATC
ACAGAACGCAATCCCGCGTAGTTTCTCTTACGATGATTTAACAAAAAATA
ACGAGAAAAGTCAAGATTTAACGGACCATACAAATAAAACACCCGTTCGT
AGACAGTACTCGTTACGAGAAGAACGCGTAAATCAGATCAACTCATCTGT
TGCTCCAAGCCCTGTATTCTCACAGAAAAGTATTGAAAAACTGAACAACA
GTCGAATTGCGTTACAGAAAGGTTCAGATAATTACAGTAGCGATGAAAAG
ATCTCACATACTAAATCGAAAGGGTCtcgtaaaaaaaagaaaatcttgca
ACCTATCGTGAATAAGATTCGTAAAGTTTCGAGAAGCGAGACTTCGCCAC
aacaacaaaaacttttaatgaTTGACAGCAACCGTTTACATCATATTGTC
ATGGAGATTATAAgcgagaaaatgaaaaagttgaCGTATGACCATAAACA
ATCAAGTGATCGGTGCCGTATGATTAGTACGACTTTAGAAAATACTTTAA
AGCTACGTCTCGGTTCGCAACCCGGTAATCCGGAATACAAAATCATTGCT
GTTGTTTACATAGGAGAGACACGTGATCAAGGGATATGTTTTGCAACGCA
ATGCAGTTACGTCCCACAACAAGACTTGTTTACAACGGCGACGTATCAGA
ACAATGAAATGTACGTGTGCGCAACCGTAATGGCTTCTCGTATGGATGGT
AATTGACGGGCGTGGATATTTATAACAGTCTCGGCAAAGTAAAATACtcg
gttttctttttataagaatagtgtactttggatgagggtcaagtattctt
aagaaagtgccaaaattgagaaatgatcaatttgagagttttggactttt
gagtaaacatttgggttaaaactacatttcttcctcaacaaaataaaaat
tcagcAAAGCTTTAAGTTTattttggatgattttttttgtaaattttgtt
tttcaccAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018728-exon-sc0000305-1491911889:305853..305875 | TCONS_00018728-exon-sc0000305-1491911889:305853..305875 | Clytia hemisphaerica | exon |
| TCONS_00018728-exon-sc0000305-1510915933:305853..305875 | TCONS_00018728-exon-sc0000305-1510915933:305853..305875 | Clytia hemisphaerica | exon |
| TCONS_00018728-exon-sc0000305-1575043694:305853..305875 | TCONS_00018728-exon-sc0000305-1575043694:305853..305875 | Clytia hemisphaerica | exon |
| TCONS_00018728-exon-sc0000305-1491911889:306960..308562 | TCONS_00018728-exon-sc0000305-1491911889:306960..308562 | Clytia hemisphaerica | exon |
| TCONS_00018728-exon-sc0000305-1510915933:306960..308562 | TCONS_00018728-exon-sc0000305-1510915933:306960..308562 | Clytia hemisphaerica | exon |
| TCONS_00018728-exon-sc0000305-1575043694:306960..308562 | TCONS_00018728-exon-sc0000305-1575043694:306960..308562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:305853..308562 + |
Blast
The following BLAST results are available for this feature:
|
