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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018722 ID=TCONS_00018722|Name=TCONS_00018722|organism=Clytia hemisphaerica|type=transcript|length=1642bp
CTCAACTAACAAACTCGTTAGGCAAAAAATACATTTTGCTAGCCAAATAC
CTCAAACCACCTGATTATATCTTTAAATCATTTCACATAACGGATTTTTC
ATTTGAACGTGTACTACCGTGAATGTGTTAAAAGATCATCCATGGAGGGG
GACTAAAAACGTTCTACGACTAAGTATGTTCCAAGACTATTAACTCCCAC
TTGCCTGAGATAAAAATTGGACTTCAATGCCtctataataatattttaca
atttcttttctTAGCAGCCTGGGTATTTTTTTCTTCCGATAAATAACATT
TAAACAAAGTCATTGCTCATGAATATTTAAGCCTTCTGTCTCGACCCATT
CATGATGAGTCTCTatcaaaatttggtaaaatataTGAATATTTTATtcc
gatttttttataaatacgGTATTTGATTGAGGCGGAATGTTTCTATTTGA
CCATGAATTCATATCTATAGGCTTATTTATATTCTGATATGCTTATTTTC
CGTTATTTTTAGTCCTTCATAATGTTTATTTGATAGAGGTTATACATATT
TGTTGAGCAAGACCAGGATTGGGCTTGAATGCCACATTGAGTGTTAgact
aaaaaggaaaaaagtcgATGGGTTAAGAATGAGTTCATTAGGAAATTGAG
ATGTGATGAAGAAAGCTGTGAAATAAGTTTAAAAGAACTGACTcaaggat
ttttcaaaaaaaaacgaagaactGAAGATCGAACCTACACATTGCAGAAT
AAAATCGACCATTATACGATTTCCCTTCACTATTAAAACTTACTATGAAA
CTGCGGACGGAAGTGAAACAACGTCTGGTGGTATTTCTTACCTGTTCGAt
agctttcattttcatttgtatcACGATCGGCGGTAACGTATGGCTGAAAA
GCGAGAACGGGCGCTCGTATAATGGACTTTGGAAGTATTGCTACAACTCG
AAATGTATCAGTTATCGCAAAACCGATCAACTTCTGAAAGCTTCTCAAGC
CTTATGTATTCTTGGATGTATTTTAGCCTTAGTAGCCGTTCTCTTGTCCA
TCATCGAACTTATTATCGATCGAATGTTTTTATACCTGATTTCAGCAACC
ACCTTTTTATCCTTCGCTTTCATGTTGAGCGGTGTGGCCGTTTTTACACA
TTATGCGCAAGATGAGAAGCTTGACTATTTGACGTATGGCTGGACGTACG
TCATCGCGTGGTTCGGTGTTGTTCTTTCTTTGTTGGCTTTCATACTAGCA
CTGATTGTGGAACGTATCTCGTTATTAGAGGATGAACGACCACACGGTGG
TTTGACCTTCGGATGGAAACCAGTCGCTCAAGATTCTTACGTCATTGGAT
TACATCAAGCCCATTAATTATGTAATAAGAACACGTCACTAGATTAGATT
ACGTCACGTGACGTAACTTTTCTAGTACATTCGACTAAAAAGCGTCCAGT
TCATAGACAGTACACTCAATCCATCATTCACTATCAGAGATGGttattct
ttgttttcgaggccatgtttttatttatttgtaacCATAAATCATAATTT
ATCTAGAAGTATATCAATAGTTTTTAGGGAACTGACTTCCCGACTTCCAG
TCAAAAATTAAAACCGTCTTTTTCTTTACATCAAGTTCTGTT Run BLAST on NCBI protein sequence of TCONS_00018722-protein >TCONS_00018722-protein ID=TCONS_00018722-protein|Name=TCONS_00018722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MKLRTEVKQRLVVFLTCSIAFIFICITIGGNVWLKSENGRSYNGLWKYCY
NSKCISYRKTDQLLKASQALCILGCILALVAVLLSIIELIIDRMFLYLIS
ATTFLSFAFMLSGVAVFTHYAQDEKLDYLTYGWTYVIAWFGVVLSLLAFI
LALIVERISLLEDERPHGGLTFGWKPVAQDSYVIGLHQAH Run BLAST on NCBI transcript from alignment at sc0000304:300345..301986 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018722 ID=TCONS_00018722|Name=TCONS_00018722|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at sc0000304:300345..301986 (Clytia hemisphaerica)
AACAGAACTTGATGTAAAGAAAAAGACGGTTTTAATTTTTGACTGGAAGT
CGGGAAGTCAGTTCCCTAAAAACTATTGATATACTTCTAGATAAATTATG
ATTTATGgttacaaataaataaaaacatggcctcgaaaacaaagaataaC
CATCTCTGATAGTGAATGATGGATTGAGTGTACTGTCTATGAACTGGACG
CTTTTTAGTCGAATGTACTAGAAAAGTTACGTCACGTGACGTAATCTAAT
CTAGTGACGTGTTCTTATTACATAATTAATGGGCTTGATGTAATCCAATG
ACGTAAGAATCTTGAGCGACTGGTTTCCATCCGAAGGTCAAACCACCGTG
TGGTCGTTCATCCTCTAATAACGAGATACGTTCCACAATCAGTGCTAGTA
TGAAAGCCAACAAAGAAAGAACAACACCGAACCACGCGATGACGTACGTC
CAGCCATACGTCAAATAGTCAAGCTTCTCATCTTGCGCATAATGTGTAAA
AACGGCCACACCGCTCAACATGAAAGCGAAGGATAAAAAGGTGGTTGCTG
AAATCAGGTATAAAAACATTCGATCGATAATAAGTTCGATGATGGACAAG
AGAACGGCTACTAAGGCTAAAATACATCCAAGAATACATAAGGCTTGAGA
AGCTTTCAGAAGTTGATCGGTTTTGCGATAACTGATACATTTCGAGTTGT
AGCAATACTTCCAAAGTCCATTATACGAGCGCCCGTTCTCGCTTTTCAGC
CATACGTTACCGCCGATCGTgatacaaatgaaaatgaaagctaTCGAACA
GGTAAGAAATACCACCAGACGTTGTTTCACTTCCGTCCGCAGTTTCATAG
TAAGTTTTAATAGTGAAGGGAAATCGTATAATGGTCGATTTTATTCTGCA
ATGTGTAGGTTCGATCTTCagttcttcgtttttttttgaaaaatccttgA
GTCAGTTCTTTTAAACTTATTTCACAGCTTTCTTCATCACATCTCAATTT
CCTAATGAACTCATTCTTAACCCATcgacttttttcctttttagtcTAAC
ACTCAATGTGGCATTCAAGCCCAATCCTGGTCTTGCTCAACAAATATGTA
TAACCTCTATCAAATAAACATTATGAAGGACTAAAAATAACGGAAAATAA
GCATATCAGAATATAAATAAGCCTATAGATATGAATTCATGGTCAAATAG
AAACATTCCGCCTCAATCAAATACcgtatttataaaaaaatcggaATAAA
ATATTCAtatattttaccaaattttgatAGAGACTCATCATGAATGGGTC
GAGACAGAAGGCTTAAATATTCATGAGCAATGACTTTGTTTAAATGTTAT
TTATCGGAAGAAAAAAATACCCAGGCTGCTAagaaaagaaattgtaaaat
attattatagaGGCATTGAAGTCCAATTTTTATCTCAGGCAAGTGGGAGT
TAATAGTCTTGGAACATACTTAGTCGTAGAACGTTTTTAGTCCCCCTCCA
TGGATGATCTTTTAACACATTCACGGTAGTACACGTTCAAATGAAAAATC
CGTTATGTGAAATGATTTAAAGATATAATCAGGTGGTTTGAGGTATTTGG
CTAGCAAAATGTATTTTTTGCCTAACGAGTTTGTTAGTTGAG Coding sequence (CDS) from alignment at sc0000304:300345..301986 >TCONS_00018722 ID=TCONS_00018722|Name=TCONS_00018722|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000304:300345..301986 (Clytia hemisphaerica)
TTAATGGGCTTGATGTAATCCAATGACGTAAGAATCTTGAGCGACTGGTT
TCCATCCGAAGGTCAAACCACCGTGTGGTCGTTCATCCTCTAATAACGAG
ATACGTTCCACAATCAGTGCTAGTATGAAAGCCAACAAAGAAAGAACAAC
ACCGAACCACGCGATGACGTACGTCCAGCCATACGTCAAATAGTCAAGCT
TCTCATCTTGCGCATAATGTGTAAAAACGGCCACACCGCTCAACATGAAA
GCGAAGGATAAAAAGGTGGTTGCTGAAATCAGGTATAAAAACATTCGATC
GATAATAAGTTCGATGATGGACAAGAGAACGGCTACTAAGGCTAAAATAC
ATCCAAGAATACATAAGGCTTGAGAAGCTTTCAGAAGTTGATCGGTTTTG
CGATAACTGATACATTTCGAGTTGTAGCAATACTTCCAAAGTCCATTATA
CGAGCGCCCGTTCTCGCTTTTCAGCCATACGTTACCGCCGATCGTgatac
aaatgaaaatgaaagctaTCGAACAGGTAAGAAATACCACCAGACGTTGT
TTCACTTCCGTCCGCAGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018722-exon-sc0000304-1491911889:300345..301986 | TCONS_00018722-exon-sc0000304-1491911889:300345..301986 | Clytia hemisphaerica | exon |
| TCONS_00018722-exon-sc0000304-1510915933:300345..301986 | TCONS_00018722-exon-sc0000304-1510915933:300345..301986 | Clytia hemisphaerica | exon |
| TCONS_00018722-exon-sc0000304-1575043694:300345..301986 | TCONS_00018722-exon-sc0000304-1575043694:300345..301986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:300345..301986 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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