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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018706 ID=TCONS_00018706|Name=TCONS_00018706|organism=Clytia hemisphaerica|type=transcript|length=1228bp
GGAAATTTTACATCAgattaaacaaaacaaaaaatttgataaaaattcca
aacgAAGGTTTCCACATACCTTAACGAAACATATGTGGTATCAGAGATTT
ATATTGACCGTGTTAAAAAAACGCTGGCTCGAAAAATGCGATGTGAGTGG
AACATTTTGCTCAGTGTTGATTACTTGTCTAAGATAGATTGCTGGGCAAG
CCTAGAAGATATGCAATCAGTTATTCCTGATCATGCCGAaagatttactc
aaattttactTAATACCTCAACTAAGGACTTTCGTCCATCGTCACACGAT
TTGTCATTTTGTACTGGGTTTCTCACTGCAGTTCTGTTCCTTATGGTAAA
AGCTACTAGACCTATGACTTTTCAATATCTGACTGTAGAAATGATTGAAA
ATGTTGACCAAAATGGAATGATCGACCAAACAGTGTTCAAAACTATGGAA
AAATACGGATTCGACACcttaatttttacaaataaagtCTTAGATATTGT
CAATGGATACATCAAATGTATTAGATCAAGAATGAATCCGACATGTGACT
ATCTTCTAATTACTAGGAACGGAACGCAACTTTCACGTCTAAGTGACGTC
TTTGGAAGGTTAGTTTTTCAAGCTATTGGAAAGTATATCAATCCAACTAG
ATATCGACAGATCATTGAAACGGAAAGCGCAGCGAAATTGACAGTCGAAG
AGCAGCATGTTATCTCCCAAGACCAAAAACATAGCTCGTTTGTCGCGCGA
GCCCACTACCAAAAACTTCAATCTAGAGATGTTGCATCGAAAGGGAAACA
AGTAATGGAAAAATTAACCGATGAGACTCCATCAAGAAATGCtctatcaa
aaattacaaaatttttggataCATCGACTCTTCAAGCCCCGCACTTTAAT
ATCACGCAATCAGACTCTGTTACACAAAACAATCGAATCAAAACTAAAGG
TCAACGCCAGAAAAAAGTAGCATTTTCTTCGACAGaagataaatttttga
aattaggaATTCAGAAATATGGGTGTGCATGGTCAAAGATTCTGGATGAT
CCTGAATTCTCATTTCATTCGTCAAGACAGGGTGCAACATTATttcgggt
tggtgtaatttaagatgcacgatctaacgatttacgatgcacgattcgcg
atccgtgcataaaatatgttaattcatgcgtaattataCTAATCgtgata
aaatatttaggcaatttacaaactttca Run BLAST on NCBI protein sequence of TCONS_00018706-protein >TCONS_00018706-protein ID=TCONS_00018706-protein|Name=TCONS_00018706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MRCEWNILLSVDYLSKIDCWASLEDMQSVIPDHAERFTQILLNTSTKDFR
PSSHDLSFCTGFLTAVLFLMVKATRPMTFQYLTVEMIENVDQNGMIDQTV
FKTMEKYGFDTLIFTNKVLDIVNGYIKCIRSRMNPTCDYLLITRNGTQLS
RLSDVFGRLVFQAIGKYINPTRYRQIIETESAAKLTVEEQHVISQDQKHS
SFVARAHYQKLQSRDVASKGKQVMEKLTDETPSRNALSKITKFLDTSTLQ
APHFNITQSDSVTQNNRIKTKGQRQKKVAFSSTEDKFLKLGIQKYGCAWS
KILDDPEFSFHSSRQGATLFRVGVI Run BLAST on NCBI transcript from alignment at sc0000304:41548..42775 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018706 ID=TCONS_00018706|Name=TCONS_00018706|organism=Clytia hemisphaerica|type=transcript|length=1228bp|location=Sequence derived from alignment at sc0000304:41548..42775 (Clytia hemisphaerica)
tgaaagtttgtaaattgcctaaatattttatcacGATTAGtataattacg
catgaattaacatattttatgcacggatcgcgaatcgtgcatcgtaaatc
gttagatcgtgcatcttaaattacaccaacccgaaATAATGTTGCACCCT
GTCTTGACGAATGAAATGAGAATTCAGGATCATCCAGAATCTTTGACCAT
GCACACCCATATTTCTGAATtcctaatttcaaaaatttatcttCTGTCGA
AGAAAATGCTACTTTTTTCTGGCGTTGACCTTTAGTTTTGATTCGATTGT
TTTGTGTAACAGAGTCTGATTGCGTGATATTAAAGTGCGGGGCTTGAAGA
GTCGATGtatccaaaaattttgtaatttttgatagaGCATTTCTTGATGG
AGTCTCATCGGTTAATTTTTCCATTACTTGTTTCCCTTTCGATGCAACAT
CTCTAGATTGAAGTTTTTGGTAGTGGGCTCGCGCGACAAACGAGCTATGT
TTTTGGTCTTGGGAGATAACATGCTGCTCTTCGACTGTCAATTTCGCTGC
GCTTTCCGTTTCAATGATCTGTCGATATCTAGTTGGATTGATATACTTTC
CAATAGCTTGAAAAACTAACCTTCCAAAGACGTCACTTAGACGTGAAAGT
TGCGTTCCGTTCCTAGTAATTAGAAGATAGTCACATGTCGGATTCATTCT
TGATCTAATACATTTGATGTATCCATTGACAATATCTAAGactttatttg
taaaaattaagGTGTCGAATCCGTATTTTTCCATAGTTTTGAACACTGTT
TGGTCGATCATTCCATTTTGGTCAACATTTTCAATCATTTCTACAGTCAG
ATATTGAAAAGTCATAGGTCTAGTAGCTTTTACCATAAGGAACAGAACTG
CAGTGAGAAACCCAGTACAAAATGACAAATCGTGTGACGATGGACGAAAG
TCCTTAGTTGAGGTATTAagtaaaatttgagtaaatcttTCGGCATGATC
AGGAATAACTGATTGCATATCTTCTAGGCTTGCCCAGCAATCTATCTTAG
ACAAGTAATCAACACTGAGCAAAATGTTCCACTCACATCGCATTTTTCGA
GCCAGCGTTTTTTTAACACGGTCAATATAAATCTCTGATACCACATATGT
TTCGTTAAGGTATGTGGAAACCTTcgtttggaatttttatcaaatttttt
gttttgtttaatcTGATGTAAAATTTCC Coding sequence (CDS) from alignment at sc0000304:41548..42775 >TCONS_00018706 ID=TCONS_00018706|Name=TCONS_00018706|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000304:41548..42775 (Clytia hemisphaerica)
ttaaattacaccaacccgaaATAATGTTGCACCCTGTCTTGACGAATGAA
ATGAGAATTCAGGATCATCCAGAATCTTTGACCATGCACACCCATATTTC
TGAATtcctaatttcaaaaatttatcttCTGTCGAAGAAAATGCTACTTT
TTTCTGGCGTTGACCTTTAGTTTTGATTCGATTGTTTTGTGTAACAGAGT
CTGATTGCGTGATATTAAAGTGCGGGGCTTGAAGAGTCGATGtatccaaa
aattttgtaatttttgatagaGCATTTCTTGATGGAGTCTCATCGGTTAA
TTTTTCCATTACTTGTTTCCCTTTCGATGCAACATCTCTAGATTGAAGTT
TTTGGTAGTGGGCTCGCGCGACAAACGAGCTATGTTTTTGGTCTTGGGAG
ATAACATGCTGCTCTTCGACTGTCAATTTCGCTGCGCTTTCCGTTTCAAT
GATCTGTCGATATCTAGTTGGATTGATATACTTTCCAATAGCTTGAAAAA
CTAACCTTCCAAAGACGTCACTTAGACGTGAAAGTTGCGTTCCGTTCCTA
GTAATTAGAAGATAGTCACATGTCGGATTCATTCTTGATCTAATACATTT
GATGTATCCATTGACAATATCTAAGactttatttgtaaaaattaagGTGT
CGAATCCGTATTTTTCCATAGTTTTGAACACTGTTTGGTCGATCATTCCA
TTTTGGTCAACATTTTCAATCATTTCTACAGTCAGATATTGAAAAGTCAT
AGGTCTAGTAGCTTTTACCATAAGGAACAGAACTGCAGTGAGAAACCCAG
TACAAAATGACAAATCGTGTGACGATGGACGAAAGTCCTTAGTTGAGGTA
TTAagtaaaatttgagtaaatcttTCGGCATGATCAGGAATAACTGATTG
CATATCTTCTAGGCTTGCCCAGCAATCTATCTTAGACAAGTAATCAACAC
TGAGCAAAATGTTCCACTCACATCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018706-exon-sc0000304-1491911889:41548..42775 | TCONS_00018706-exon-sc0000304-1491911889:41548..42775 | Clytia hemisphaerica | exon |
| TCONS_00018706-exon-sc0000304-1510915933:41548..42775 | TCONS_00018706-exon-sc0000304-1510915933:41548..42775 | Clytia hemisphaerica | exon |
| TCONS_00018706-exon-sc0000304-1575043694:41548..42775 | TCONS_00018706-exon-sc0000304-1575043694:41548..42775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:41548..42775 . |
Blast
The following BLAST results are available for this feature:
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