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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018659 ID=TCONS_00018659|Name=TCONS_00018659|organism=Clytia hemisphaerica|type=transcript|length=1855bp
ATTTTATTAGCttcaaaaatcatgaaattggcGAAATCGTTTATGTTTTG
TTTCCTCTTGTTTTGTATACTCTTAAACAAGATCAATTGCAAATTATTCA
GCAAAATGGCTCGAAATTCAAAACCACTTGAACCACCTTACGAAGTagct
gaatttgaaaaatttgccgATCAAAAATGTTTTACAATCTGTCATTTCGA
GCTCAAATGTGTTGCTCTACTCATCGAGAAAGTTACCGAGTTGAAGTTTC
AATGTAGCTTGTATGATCGATCCTTCCATTATCTGACGATGACATCAAAT
CCGATTGAATCCGTTTTCCATTCCAAGTATTTCCCGATCTTCAGAGATTG
TGTAGATCATTACAAAGCAGGAGCAAGGGAATCAGGAGTATATCAAATCA
CATTGGCTAGTGGTCTTAAAGACGTCAGATGCAATATGGACAATGATGGT
GGTGGTTGGCTAGTGTTTCAGCGCCGCATGGATGGCAGTGTTGATTTTTA
TCAGCCTCAGTGGGAAGGCTATAAAAATGGTTTCGGAGAACTGTCGGGTG
AATTTTGGCTTGGTAACGAATTTCTACACCAAATAACAAGCTCAGAAAAG
CATGAAGTGTANTGGAGAACCGTCGGGTGAATTTTGGCTTGGTAACGAAT
TTCTACACCAAATAACAAGCTCAGAAAAGCATGAAGTGTATATCCACGCC
GGTAGATTTACGAATGAGACAAAATATGCCAAATATGGATATTTTGAGGT
AAAAAGCGAAGCAGACAAGTATCAATTGTTAGGTGGTGACTTCATGGAAG
GAACAGATTCACTCTCATATCATTTCGGTCATTTTTTCTCGACAAGAGAT
AAAGACAATGACAATTGTCTTTCTTGCTCAGGCAATTGTCTTTCTTGCTC
ATGCGTGGCTCGAAATCTCAATTACAAGAGAGGTGGTTTTTGGTACAATA
ATTGCGctaaaataaatttcaacgggttttaCCAACCACAAGAGAATGTT
GGCTTAGAATTCAAAGGAATTTTCTGGAATGATTGGTTGGGTCAAAGTAA
ATCCCTTAAATGGACCGAGATGATGATACGTAGAGTTGATCATTGAAAAA
CGTCATCCTTTTGCTCCCGATGGCATTGATGATCGAGGTGATCATCaatc
ttttgggtatttccctcactttttgtcctgtgaaacaaaacaaaaaagaa
accatgagacactttttttttgtgtttgtgggatggagcatgttgcattg
cactaaCGCGAAAAAAAcctctcgtgtccccaagccttaagaaAGACGAT
GCTATTGGGAATCTCTCAAACTGACGTGGATATAACGAAATTGTGGTGTT
ACATCCACTTCCGTTCCAAAAATAGCCTGGCGTGGTTAAAATTCGTGGAA
AAATTCTAATTTATTTCGTGTTTCGAGCCAGCGAATTTCGCCATTCGCCA
GGCCTAAAAAAGACCTCTGCGAGGCTAAATAATTAAAAAGGAACattgaa
atggaaaaaaatcagtatttttttaaattttaatcttATTATTCGAAGTT
TTTCATATGTAATTTGTATATATACAACTTTTTGGTATCAAATCAAGCAC
TGATATTGATGTATAGAAACTTTATAACAGAAAAATATACATTATGTAAA
TAATAAATTCAACTATAAACACAATGGTGAGTTTTATTCGGTGGCGGCAG
GCGTTTCCTCAGCGGGCGCTGCTTCTTCGCTTGCAGCTTCTTCAGCTGGG
GCGTCAGTGGATGCAGCTTCTTCTGCTGGGGCGGCTTCTTTAGCTGCTGG
GGTGTCTTCTGCAGCGGCGGCTGGTGCCTCTTCAGCTGGGGCTGTCTCag
ctaaa Run BLAST on NCBI protein sequence of TCONS_00018659-protein >TCONS_00018659-protein ID=TCONS_00018659-protein|Name=TCONS_00018659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
ILLASKIMKLAKSFMFCFLLFCILLNKINCKLFSKMARNSKPLEPPYEVA
EFEKFADQKCFTICHFELKCVALLIEKVTELKFQCSLYDRSFHYLTMTSN
PIESVFHSKYFPIFRDCVDHYKAGARESGVYQITLASGLKDVRCNMDNDG
GGWLVFQRRMDGSVDFYQPQWEGYKNGFGELSGEFWLGNEFLHQITSSEK
HEVXWRTVG Run BLAST on NCBI transcript from alignment at sc0000304:136142..138531+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018659 ID=TCONS_00018659|Name=TCONS_00018659|organism=Clytia hemisphaerica|type=transcript|length=2390bp|location=Sequence derived from alignment at sc0000304:136142..138531+ (Clytia hemisphaerica)
ATTTTATTAGCttcaaaaatcatgaaattggcGAAATCGTTTATGTTTTG
TTTCCTCTTGTTTTGTATACTCTTAAACAAGATCAATTGCAAATTATTCA
GCAAAATGGCTCGAAATTCAAAACCACTTGAACCACCTTACGAAGTagct
gaatttgaaaaatttgccgATCAAAAATGTTTTACAATCTGTCATTTCGA
GCTCAAATGTGTTGCTCTACTCATCGAGAAAGTTACCGAGTTGAAGTTTC
AATGTAGCTTGTATGATCGATCCTTCCATTATCTGACGATGACATCAAAT
CCGATTGAATCCGTTTTCCATTCCAAGTATTTCCCGATCTTCAGAGATTG
TGTAGATCATTACAAAGCAGGAGCAAGGGAATCAGGTAATTCTTGGTTTG
TAAAATGATGAATatactcattttgttttataaacaTACGAGAAAATCGG
GTCGAGGctcaatatgcttagcaaaatctcatttttattgCCACCGCAGC
GAGCTGTAAGTTGAAATTCTGCACTTCAgtattgaaaaatgttgataaat
taTATCGCTAACGtatgaaaaaaatcgaaaacaaTTCTTTCGTGAAGTAA
TGTTCAAGTTCTATTAATTCTAAGTAActcaaagaaaatgattttataAC
TGAATActgtcggattttttataccgaatttgaaatacaggcggcaacga
agctcgcttcaaaagAGACAATAATGagaatttcgaatttttaagtcGGA
ACATTGATTCTGCTCAAagaatcaaattatttttgtaatttggcacgcga
aaatctttggtctaagaaagctTTTCTACAGGCTTGGTGAAAAGCAAGCA
AGGTAAACCTATTTTATTACCCTGTAGTTTATCCGCTTTGAATTTCattc
aaagaaatttctttcaCCAGGAGTATATCAAATCACATTGGCTAGTGGTC
TTAAAGACGTCAGATGCAATATGGACAATGATGGTGGTGGTTGGCTAGTG
TTTCAGCGCCGCATGGATGGCAGTGTTGATTTTTATCAGCCTCAGTGGGA
AGGCTATAAAAATGGTTTCGGAGAACTGTCGGGTGAATTTTGGCTTGGTA
ACGAATTTCTACACCAAATAACAAGCTCAGAAAAGCATGAAGTGTANTGG
AGAACCGTCGGGTGAATTTTGGCTTGGTAACGAATTTCTACACCAAATAA
CAAGCTCAGAAAAGCATGAAGTGTATATCCACGCCGGTAGATTTACGAAT
GAGACAAAATATGCCAAATATGGATATTTTGAGGTAAAAAGCGAAGCAGA
CAAGTATCAATTGTTAGGTGGTGACTTCATGGAAGGAACAGATTCACTCT
CATATCATTTCGGTCATTTTTTCTCGACAAGAGATAAAGACAATGACAAT
TGTCTTTCTTGCTCAGGCAATTGTCTTTCTTGCTCATGCGTGGCTCGAAA
TCTCAATTACAAGAGAGGTGGTTTTTGGTACAATAATTGCGctaaaataa
atttcaacgggttttaCCAACCACAAGAGAATGTTGGCTTAGAATTCAAA
GGAATTTTCTGGAATGATTGGTTGGGTCAAAGTAAATCCCTTAAATGGAC
CGAGATGATGATACGTAGAGTTGATCATTGAAAAACGTCATCCTTTTGCT
CCCGATGGCATTGATGATCGAGGTGATCATCaatcttttgggtatttccc
tcactttttgtcctgtgaaacaaaacaaaaaagaaaccatgagacacttt
ttttttgtgtttgtgggatggagcatgttgcattgcactaaCGCGAAAAA
AAcctctcgtgtccccaagccttaagaaAGACGATGCTATTGGGAATCTC
TCAAACTGACGTGGATATAACGAAATTGTGGTGTTACATCCACTTCCGTT
CCAAAAATAGCCTGGCGTGGTTAAAATTCGTGGAAAAATTCTAATTTATT
TCGTGTTTCGAGCCAGCGAATTTCGCCATTCGCCAGGCCTAAAAAAGACC
TCTGCGAGGCTAAATAATTAAAAAGGAACattgaaatggaaaaaaatcag
tatttttttaaattttaatcttATTATTCGAAGTTTTTCATATGTAATTT
GTATATATACAACTTTTTGGTATCAAATCAAGCACTGATATTGATGTATA
GAAACTTTATAACAGAAAAATATACATTATGTAAATAATAAATTCAACTA
TAAACACAATGGTGAGTTTTATTCGGTGGCGGCAGGCGTTTCCTCAGCGG
GCGCTGCTTCTTCGCTTGCAGCTTCTTCAGCTGGGGCGTCAGTGGATGCA
GCTTCTTCTGCTGGGGCGGCTTCTTTAGCTGCTGGGGTGTCTTCTGCAGC
GGCGGCTGGTGCCTCTTCAGCTGGGGCTGTCTCagctaaa Coding sequence (CDS) from alignment at sc0000304:136142..138531+ >TCONS_00018659 ID=TCONS_00018659|Name=TCONS_00018659|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000304:136142..138531+ (Clytia hemisphaerica)
ATTTTATTAGCttcaaaaatcatgaaattggcGAAATCGTTTATGTTTTG
TTTCCTCTTGTTTTGTATACTCTTAAACAAGATCAATTGCAAATTATTCA
GCAAAATGGCTCGAAATTCAAAACCACTTGAACCACCTTACGAAGTagct
gaatttgaaaaatttgccgATCAAAAATGTTTTACAATCTGTCATTTCGA
GCTCAAATGTGTTGCTCTACTCATCGAGAAAGTTACCGAGTTGAAGTTTC
AATGTAGCTTGTATGATCGATCCTTCCATTATCTGACGATGACATCAAAT
CCGATTGAATCCGTTTTCCATTCCAAGTATTTCCCGATCTTCAGAGATTG
TGTAGATCATTACAAAGCAGGAGCAAGGGAATCAGGAGTATATCAAATCA
CATTGGCTAGTGGTCTTAAAGACGTCAGATGCAATATGGACAATGATGGT
GGTGGTTGGCTAGTGTTTCAGCGCCGCATGGATGGCAGTGTTGATTTTTA
TCAGCCTCAGTGGGAAGGCTATAAAAATGGTTTCGGAGAACTGTCGGGTG
AATTTTGGCTTGGTAACGAATTTCTACACCAAATAACAAGCTCAGAAAAG
CATGAAGTGTANTGGAGAACCGTCGGGTGAATTTTATTAGCttcaaaaat
catgaaattggcGAAATCGTTTATGTTTTGTTTCCTCTTGTTTTGTATAC
TCTTAAACAAGATCAATTGCAAATTATTCAGCAAAATGGCTCGAAATTCA
AAACCACTTGAACCACCTTACGAAGTagctgaatttgaaaaatttgccgA
TCAAAAATGTTTTACAATCTGTCATTTCGAGCTCAAATGTGTTGCTCTAC
TCATCGAGAAAGTTACCGAGTTGAAGTTTCAATGTAGCTTGTATGATCGA
TCCTTCCATTATCTGACGATGACATCAAATCCGATTGAATCCGTTTTCCA
TTCCAAGTATTTCCCGATCTTCAGAGATTGTGTAGATCATTACAAAGCAG
GAGCAAGGGAATCAGGAGTATATCAAATCACATTGGCTAGTGGTCTTAAA
GACGTCAGATGCAATATGGACAATGATGGTGGTGGTTGGCTAGTGTTTCA
GCGCCGCATGGATGGCAGTGTTGATTTTTATCAGCCTCAGTGGGAAGGCT
ATAAAAATGGTTTCGGAGAACTGTCGGGTGAATTTTGGCTTGGTAACGAA
TTTCTACACCAAATAACAAGCTCAGAAAAGCATGAAGTGTANTGGAGAAC
CGTCGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018659-exon-sc0000304-1491911889:136142..136526 | TCONS_00018659-exon-sc0000304-1491911889:136142..136526 | Clytia hemisphaerica | exon |
| TCONS_00018659-exon-sc0000304-1510915933:136142..136526 | TCONS_00018659-exon-sc0000304-1510915933:136142..136526 | Clytia hemisphaerica | exon |
| TCONS_00018659-exon-sc0000304-1575043694:136142..136526 | TCONS_00018659-exon-sc0000304-1575043694:136142..136526 | Clytia hemisphaerica | exon |
| TCONS_00018659-exon-sc0000304-1491911889:137062..138531 | TCONS_00018659-exon-sc0000304-1491911889:137062..138531 | Clytia hemisphaerica | exon |
| TCONS_00018659-exon-sc0000304-1510915933:137062..138531 | TCONS_00018659-exon-sc0000304-1510915933:137062..138531 | Clytia hemisphaerica | exon |
| TCONS_00018659-exon-sc0000304-1575043694:137062..138531 | TCONS_00018659-exon-sc0000304-1575043694:137062..138531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:136142..138531 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
BLAST of TCONS_00018659 vs. Swiss-Prot (Human)
Match: ANGP2 (Angiopoietin-2 OS=Homo sapiens GN=ANGPT2 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.290e-23 Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 142 EVAEFEKFADQKCFTICHFELKCVALLIEKVTELKFQCSLYDRSFHYLTM--TSNPIESVFHSKYFPI-FRDCVDHYKAGARESGVYQITLASGLKDVR--CNMDNDGGGWLVFQRRMDGSVDFYQPQWEGYKNGFGELSGEFWLGNEFLHQITSSEKH 603
E + + ++ I E K V + K Q L + + LTM TSN + +K I FRDC + +K+G +G+Y +T + ++++ C+M+ GGGW + QRR DGSVDF Q W+ YK GFG SGE+WLGNEF+ Q+T+ +++
Sbjct: 212 EKDQLQVLVSKQNSIIEELEKKIVTATVNNSVLQKQQHDLMETVNNLLTMMSTSNSAKDPTVAKEEQISFRDCAEVFKSGHTTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDF-QRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRY 369 HSP 2 Score: 92.0485 bits (227), Expect = 1.471e-19 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2
Query: 614 GEPSGEFWLGNEFLHQITSSEKHEVYIHAGRFTNETKYAKYGYFEVKSEADKYQ--LLGGDFMEGTDSLSYHFGHFFSTRDKDNDXXXXXXXXXXXXXXVARNLNYKRGGFWYNNCAKINFNGFYQPQENVGLEFKGIFWNDWLGQSKSLKWTEMMIRRVD 1090
G PSGE+WLGNEF+ Q+T+ +++ + IH + Y+ Y +F + SE Y+ L G G S G+ FST+D DND C + + GG+W++ C N NG Y PQ +F GI W W G SLK T MMIR D
Sbjct: 347 GNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKC------------ICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPAD 495
The following BLAST results are available for this feature:
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