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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018626 ID=TCONS_00018626|Name=TCONS_00018626|organism=Clytia hemisphaerica|type=transcript|length=1464bpRun BLAST on NCBI protein sequence of TCONS_00018626-protein >TCONS_00018626-protein ID=TCONS_00018626-protein|Name=TCONS_00018626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp FIIFPCAFLDLDLYFLMTSKEVHTSILTSLLAGSCGGISTDIVLFPLDSIRun BLAST on NCBI transcript from alignment at sc0000303:142189..157451- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018626 ID=TCONS_00018626|Name=TCONS_00018626|organism=Clytia hemisphaerica|type=transcript|length=15263bp|location=Sequence derived from alignment at sc0000303:142189..157451- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000303:142189..157451- >TCONS_00018626 ID=TCONS_00018626|Name=TCONS_00018626|organism=Clytia hemisphaerica|type=CDS|length=8610bp|location=Sequence derived from alignment at sc0000303:142189..157451- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018626 vs. Swiss-Prot (Human)
Match: SAMC (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 7.440e-67 Identity = 127/265 (47.92%), Postives = 181/265 (68.30%), Query Frame = 3
Query: 81 LTSLLAGSCGGISTDIVLFPLDSIKTRAQTQAGFWKSGGFKGLFRGVGSVALGSAPSGASFFFAYEGVKNL----TKSNMSPLASHLLAASCGEVFSCMFRIPFEVVKQTAQANKSLNSLDALKFIVKRDGLAGLTRGFFSMVSREIPFTVIQFPLWEHLKTL-AAKDDKPCTPLXXXXXXXXXXXXXXXLTTPMDVAKTRIILVQNEGSHG-GNPYKVMYSIGKTEGIARLFSGIVPRVVWISIGGFIFLGTYEKSKQILQDLG 857
+ +L+AG G+S D++LFPLD+IKTR Q+ GF K+GGF G++ GV S A+GS P+ A+FF YE VK + S ++P+ H+LAAS GEV +C+ R+P EVVKQ AQ + S + I+ +G+ GL RG+ S V REIPF+++QFPLWE LK L + + D SAV G+FAGGFAAA+TTP+DVAKTRI L + S GN V++ + +++G+A LF+G+ PR+ IS+GGFIFLG Y+++ +L ++G
Sbjct: 7 VAALVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPM-KHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVG 270 The following BLAST results are available for this feature:
BLAST of TCONS_00018626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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