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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018596 ID=TCONS_00018596|Name=TCONS_00018596|organism=Clytia hemisphaerica|type=transcript|length=2656bp
CATGACTGATTtattgatcaacaaatagtcatcaaatacgacagagatag
aacaacagaaattcagatgttatcattccagccgcggctttcttatacta
tggtatCATTACCTTACGATGAGAACTTTTCAGGAGTATTGTGTTANTac
ttatttcttgatcaacaaatagtcatcaaatacgacagagatagaacaac
agaaattcagatgttatcattccagccgcggctttcttatactatggtat
CATTACCTTACGATGAGAACTTTTCAGGAGTATTGTGTTAAAGGTATTAT
TTTTACATACGTGTTTccgttttatatcagacacatatttcatatcagga
cagtgtcttcctattgttatattatactTATATAAGCAAATGTttctctt
ttcttctttctgccaaatcttgctccacatccgtatcaatccaatgtgaa
aaagattgtgaattaaaattgataagaAAGCAAACgacatcactcttatt
taaaaacaaaaccttttaagTTTAAAACCAACGCTTTTTTTGCTGATATT
AAACGCTTGATTGATTAGTTTTTTTGTGACTATACaaaatatttatgttt
tttcgTTGAAAACTGAATAGAACTCTCGAGCAGCCGATGTTACACCCATG
CAACCACTGCAGAGGGCcatcaaaataatcaaagtATTCAAAACCACCTC
CATATTAGTAATGGTCTGCCATCGAAGTTTGATGTAGAACAGATTTGGAT
AAAGCAAGACAAGGATGGTACCTGTGGTGTTACCAACAAACGACATCAAC
AAACTGAAATGAGGAACTCCTGCTGCGATCAAGATGAAGAGCATGACCAC
CATAAATCGAAAGAGAAGGTTAGGTGTTAGGTAAGGGCTTCCCAATAACT
TTGTTTCAGTGTCAAGCAGCTTTTCTAATTNAAATGTttctcttttcttc
tttctgccaaatcttgctccacatccgtatcaatccaatgtgaaaaagat
tgtgaattaaaattgataagaAAGCAAACgacatcactcttatttaaaaa
caaaacctttttaaagttcaaaacCAACGCTTTTTTTGCTGATATTAAAC
GCTTGATTGATTAGTTTTTTTGGGACTATACAAAATAATTATGTTTTTTC
GTTGAAAACTGAATAGAACTCTCGAGCAGCCGATGTTACACCCATGCAAC
CACTGCAGAGGGCcatcaaaataatcaaagtATTCAAAACCACCTCCATG
TTAGTAATGGTCTGCCATCGAAGTTTGATGTAGAACAGATTTGGATAAAG
CAAGACAAGGATGGTACCTGTGGTGTTACCAACAAACGACATCAACAAAC
TGAAATGAGGAACTCCTGCTGCGATCAAGATGAAGAGCATGACCACCATA
AATCGAAAGAGAAGGTTAGGTGTTAGGTAAGGGCTTCCCAATAACTTTGT
TTCAGTGTCAAGCagcttttctaattttttcgGAAGGACGATCTGGTTTT
CCAGGATATCGAATACTGTGAACATTGGCACAGTGTAGAAAGATAAGGAG
AGGATGATGGCAGAAATATTAATGACGTCACCAAAGATATTATGCGGTAA
ATTCAACGTCATGATTTGATCTGTTTTCTCCGTAAACGCCAAGAAAACAA
TGATTCCAATAGCAAATTTGAAGACAGTGACAATGGTATAAGAGAAATCC
ATCAATGGTTCGAATAACTCTGGTTCGCGCATGCAACGTTCGATGGAAGG
TAAGTAGGCCTGGGATGAGAAGGTTACCATGACAATTCCCAGTGATATCG
GAGTGACGTCAGCATCAAAATCCGGCATCATTTCACTGTACCAATGGGTT
CGATTTGTCAAACTGTACAACAAAACGCAAATGCTGATGGCTGTCGCCAT
AACAACAGACAAAATACATGTCCATGTAACCTGGTGCATTTTACGGACCA
GAATGGTTGGAATGATGATCAACGATAAAAGGAAGATCCACGTTGATTCG
CTCATACCAGAATTAGGAAATGTGTGAGCAATGACTGTCCCTGGCATGAT
GAGCAACAAAACACAATGTGAAAACTGTTCAATACAGTTCATTATGTGAA
CCATCAGACGTCCGAAACGAGGGCTGAACTCCTCGCCAATGTCTGCGTAA
CTATCGCGCACACGAACCCGCCGCCCGTCTTCAGTTTCTTCATAAAGGAG
ATTGACCAATAGTTTACCAGTGTAGTTGCCAAGCAACCCCACAATTACCG
TGATTAAAATCCCCCAGTATCCTCCAAGCCGGATGACAAACGGCATTGCT
AAAATACCGGTACCGAGATTAGCATTGATCAAGTTGAATATAGATTGGAT
GAGATTGGTTTTGCCATCATCCGTATCATCCACTATCTGGCATTTCTTAG
CAAGTGATTTGACTCCGGTTTTCAACCAAGTGATTTTGTTAAGGGACTTT
GGTGAATTAGAGGGCGGCGATTCTAGATCTTCGTGGGCGTCAATGGCGGT
ATCACTGTATGCGGCTTCATCACCTTCATTAAAAAGAAAGTGGTGTCTGG
TGTTAGAAGACATTCTTCGAGATATGGTAAAAGGACCTTCTTTCAATGAC
ACTTCATTTGAAATGATAGGGTTGGAAAAGCTTTCTTCCAAGCAGAAACA
AAATAG Run BLAST on NCBI protein sequence of TCONS_00018596-protein >TCONS_00018596-protein ID=TCONS_00018596-protein|Name=TCONS_00018596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
LFCFCLEESFSNPIISNEVSLKEGPFTISRRMSSNTRHHFLFNEGDEAAY
SDTAIDAHEDLESPPSNSPKSLNKITWLKTGVKSLAKKCQIVDDTDDGKT
NLIQSIFNLINANLGTGILAMPFVIRLGGYWGILITVIVGLLGNYTGKLL
VNLLYEETEDGRRVRVRDSYADIGEEFSPRFGRLMVHIMNCIEQFSHCVL
LLIMPGTVIAHTFPNSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCILS
VVMATAISICVLLYSLTNRTHWYSEMMPDFDADVTPISLGIVMVTFSSQA
YLPSIERCMREPELFEPLMDFSYTIVTVFKFAIGIIVFLAFTEKTDQIMT
LNLPHNIFGDVINISAIILSLSFYTVPMFTVFDILENQIVLPKKLEKLLD
TETKLLGSPYLTPNLLFRFMVVMLFILIAAGVPHFSLLMSFVGNTTGTIL
VLLYPNLFYIKLRWQTITNMEVVLNTLIILMALCSGCMGVTSAAREFYSV
FNEKT Run BLAST on NCBI transcript from alignment at sc0000301:253651..256306 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018596 ID=TCONS_00018596|Name=TCONS_00018596|organism=Clytia hemisphaerica|type=transcript|length=2656bp|location=Sequence derived from alignment at sc0000301:253651..256306 (Clytia hemisphaerica)
CTATTTTGTTTCTGCTTGGAAGAAAGCTTTTCCAACCCTATCATTTCAAA
TGAAGTGTCATTGAAAGAAGGTCCTTTTACCATATCTCGAAGAATGTCTT
CTAACACCAGACACCACTTTCTTTTTAATGAAGGTGATGAAGCCGCATAC
AGTGATACCGCCATTGACGCCCACGAAGATCTAGAATCGCCGCCCTCTAA
TTCACCAAAGTCCCTTAACAAAATCACTTGGTTGAAAACCGGAGTCAAAT
CACTTGCTAAGAAATGCCAGATAGTGGATGATACGGATGATGGCAAAACC
AATCTCATCCAATCTATATTCAACTTGATCAATGCTAATCTCGGTACCGG
TATTTTAGCAATGCCGTTTGTCATCCGGCTTGGAGGATACTGGGGGATTT
TAATCACGGTAATTGTGGGGTTGCTTGGCAACTACACTGGTAAACTATTG
GTCAATCTCCTTTATGAAGAAACTGAAGACGGGCGGCGGGTTCGTGTGCG
CGATAGTTACGCAGACATTGGCGAGGAGTTCAGCCCTCGTTTCGGACGTC
TGATGGTTCACATAATGAACTGTATTGAACAGTTTTCACATTGTGTTTTG
TTGCTCATCATGCCAGGGACAGTCATTGCTCACACATTTCCTAATTCTGG
TATGAGCGAATCAACGTGGATCTTCCTTTTATCGTTGATCATCATTCCAA
CCATTCTGGTCCGTAAAATGCACCAGGTTACATGGACATGTATTTTGTCT
GTTGTTATGGCGACAGCCATCAGCATTTGCGTTTTGTTGTACAGTTTGAC
AAATCGAACCCATTGGTACAGTGAAATGATGCCGGATTTTGATGCTGACG
TCACTCCGATATCACTGGGAATTGTCATGGTAACCTTCTCATCCCAGGCC
TACTTACCTTCCATCGAACGTTGCATGCGCGAACCAGAGTTATTCGAACC
ATTGATGGATTTCTCTTATACCATTGTCACTGTCTTCAAATTTGCTATTG
GAATCATTGTTTTCTTGGCGTTTACGGAGAAAACAGATCAAATCATGACG
TTGAATTTACCGCATAATATCTTTGGTGACGTCATTAATATTTCTGCCAT
CATCCTCTCCTTATCTTTCTACACTGTGCCAATGTTCACAGTATTCGATA
TCCTGGAAAACCAGATCGTCCTTCcgaaaaaattagaaaagctGCTTGAC
ACTGAAACAAAGTTATTGGGAAGCCCTTACCTAACACCTAACCTTCTCTT
TCGATTTATGGTGGTCATGCTCTTCATCTTGATCGCAGCAGGAGTTCCTC
ATTTCAGTTTGTTGATGTCGTTTGTTGGTAACACCACAGGTACCATCCTT
GTCTTGCTTTATCCAAATCTGTTCTACATCAAACTTCGATGGCAGACCAT
TACTAACATGGAGGTGGTTTTGAATactttgattattttgatgGCCCTCT
GCAGTGGTTGCATGGGTGTAACATCGGCTGCTCGAGAGTTCTATTCAGTT
TTCAACGAAAAAACATAATTATTTTGTATAGTCCCAAAAAAACTAATCAA
TCAAGCGTTTAATATCAGCAAAAAAAGCGTTGgttttgaactttaaaaag
gttttgtttttaaataagagtgatgtcGTTTGCTTtcttatcaattttaa
ttcacaatctttttcacattggattgatacggatgtggagcaagatttgg
cagaaagaagaaaagagaaACATTTNAATTAGAAAAGCTGCTTGACACTG
AAACAAAGTTATTGGGAAGCCCTTACCTAACACCTAACCTTCTCTTTCGA
TTTATGGTGGTCATGCTCTTCATCTTGATCGCAGCAGGAGTTCCTCATTT
CAGTTTGTTGATGTCGTTTGTTGGTAACACCACAGGTACCATCCTTGTCT
TGCTTTATCCAAATCTGTTCTACATCAAACTTCGATGGCAGACCATTACT
AATATGGAGGTGGTTTTGAATactttgattattttgatgGCCCTCTGCAG
TGGTTGCATGGGTGTAACATCGGCTGCTCGAGAGTTCTATTCAGTTTTCA
AcgaaaaaacataaatattttGTATAGTCACAAAAAAACTAATCAATCAA
GCGTTTAATATCAGCAAAAAAAGCGTTGGTTTTAAActtaaaaggttttg
tttttaaataagagtgatgtcGTTTGCTTtcttatcaattttaattcaca
atctttttcacattggattgatacggatgtggagcaagatttggcagaaa
gaagaaaagagaaACATTTGCTTATATAagtataatataacaataggaag
acactgtcctgatatgaaatatgtgtctgatataaaacggAAACACGTAT
GTAAAAATAATACCTTTAACACAATACTCCTGAAAAGTTCTCATCGTAAG
GTAATGataccatagtataagaaagccgcggctggaatgataacatctga
atttctgttgttctatctctgtcgtatttgatgactatttgttgatcaag
aaataagtANTAACACAATACTCCTGAAAAGTTCTCATCGTAAGGTAATG
ataccatagtataagaaagccgcggctggaatgataacatctgaatttct
gttgttctatctctgtcgtatttgatgactatttgttgatcaataAATCA
GTCATG Coding sequence (CDS) from alignment at sc0000301:253651..256306 >TCONS_00018596 ID=TCONS_00018596|Name=TCONS_00018596|organism=Clytia hemisphaerica|type=CDS|length=1518bp|location=Sequence derived from alignment at sc0000301:253651..256306 (Clytia hemisphaerica)
CTATTTTGTTTCTGCTTGGAAGAAAGCTTTTCCAACCCTATCATTTCAAA
TGAAGTGTCATTGAAAGAAGGTCCTTTTACCATATCTCGAAGAATGTCTT
CTAACACCAGACACCACTTTCTTTTTAATGAAGGTGATGAAGCCGCATAC
AGTGATACCGCCATTGACGCCCACGAAGATCTAGAATCGCCGCCCTCTAA
TTCACCAAAGTCCCTTAACAAAATCACTTGGTTGAAAACCGGAGTCAAAT
CACTTGCTAAGAAATGCCAGATAGTGGATGATACGGATGATGGCAAAACC
AATCTCATCCAATCTATATTCAACTTGATCAATGCTAATCTCGGTACCGG
TATTTTAGCAATGCCGTTTGTCATCCGGCTTGGAGGATACTGGGGGATTT
TAATCACGGTAATTGTGGGGTTGCTTGGCAACTACACTGGTAAACTATTG
GTCAATCTCCTTTATGAAGAAACTGAAGACGGGCGGCGGGTTCGTGTGCG
CGATAGTTACGCAGACATTGGCGAGGAGTTCAGCCCTCGTTTCGGACGTC
TGATGGTTCACATAATGAACTGTATTGAACAGTTTTCACATTGTGTTTTG
TTGCTCATCATGCCAGGGACAGTCATTGCTCACACATTTCCTAATTCTGG
TATGAGCGAATCAACGTGGATCTTCCTTTTATCGTTGATCATCATTCCAA
CCATTCTGGTCCGTAAAATGCACCAGGTTACATGGACATGTATTTTGTCT
GTTGTTATGGCGACAGCCATCAGCATTTGCGTTTTGTTGTACAGTTTGAC
AAATCGAACCCATTGGTACAGTGAAATGATGCCGGATTTTGATGCTGACG
TCACTCCGATATCACTGGGAATTGTCATGGTAACCTTCTCATCCCAGGCC
TACTTACCTTCCATCGAACGTTGCATGCGCGAACCAGAGTTATTCGAACC
ATTGATGGATTTCTCTTATACCATTGTCACTGTCTTCAAATTTGCTATTG
GAATCATTGTTTTCTTGGCGTTTACGGAGAAAACAGATCAAATCATGACG
TTGAATTTACCGCATAATATCTTTGGTGACGTCATTAATATTTCTGCCAT
CATCCTCTCCTTATCTTTCTACACTGTGCCAATGTTCACAGTATTCGATA
TCCTGGAAAACCAGATCGTCCTTCcgaaaaaattagaaaagctGCTTGAC
ACTGAAACAAAGTTATTGGGAAGCCCTTACCTAACACCTAACCTTCTCTT
TCGATTTATGGTGGTCATGCTCTTCATCTTGATCGCAGCAGGAGTTCCTC
ATTTCAGTTTGTTGATGTCGTTTGTTGGTAACACCACAGGTACCATCCTT
GTCTTGCTTTATCCAAATCTGTTCTACATCAAACTTCGATGGCAGACCAT
TACTAACATGGAGGTGGTTTTGAATactttgattattttgatgGCCCTCT
GCAGTGGTTGCATGGGTGTAACATCGGCTGCTCGAGAGTTCTATTCAGTT
TTCAACGAAAAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018596-exon-sc0000301-1491911889:253651..256306 | TCONS_00018596-exon-sc0000301-1491911889:253651..256306 | Clytia hemisphaerica | exon |
| TCONS_00018596-exon-sc0000301-1510915933:253651..256306 | TCONS_00018596-exon-sc0000301-1510915933:253651..256306 | Clytia hemisphaerica | exon |
| TCONS_00018596-exon-sc0000301-1575043694:253651..256306 | TCONS_00018596-exon-sc0000301-1575043694:253651..256306 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000301 | supercontig | sc0000301:253651..256306 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013057 | AA_transpt_TM |
Blast
BLAST of TCONS_00018596 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 2.335e-51 Identity = 119/397 (29.97%), Postives = 214/397 (53.90%), Query Frame = -1
Query: 1202 DDGKTNLIQSIFNLINANLGTGILAMPFVIRLGGYWGILITVIVGLLGNYTGKLLVNLLYEETEDGRRVRVRDSYADIGEE-FSPRF---GRLMVHIMNCIEQFSHCVLLLIMPGTVIAHTFPNSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCILSVVMATAISICVLLYSLTNRTHWYSEMMPDF-DADVTPISLGIVMVTFSSQAYLPSIERCMREPELFEPLMDFSYTIVTVFKFAIGIIVFLAFTEKTDQIMTLNLPHNIFGDVINISAIILSLSFYTVPMFTVFDILENQIVXXXXXXXXXXXXXXXLGSPYLTP-NLLFRFMVVMLFILIAAGVPHFSLLMSFVGNTTGTILVLLYPNLFYIKLRWQTITNMEVVLNTLI-ILMALCS 2371
D K ++ +N+ NA G +L +P+ I GGY G+ + + ++ YTGK+L+ LYEE EDG VRVRDSY I +PRF G +V++ IE C+L +++ G ++ ++FP +S+ +W + + +++P ++ + V+ +L + I+I V+ Y L+ W E + + D PIS+GI++ +++SQ +LPS+E M++P F +M++++ V K ++ +L + ++T +++T NLP +I V+NI + +L Y +P F ++LE + + G L L R +V+ +L+A VPHF+LLM G+ TG L L P+LF+++L W+ + +V + I ++ +CS
Sbjct: 112 DKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPGSIRA-VVNIFLVAKALLSYPLPFFAAVEVLEKSLF---QEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICS 504
The following BLAST results are available for this feature:
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