TCONS_00018596-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018596-protein
Unique Name	TCONS_00018596-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	505

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018596-protein ID=TCONS_00018596-protein|Name=TCONS_00018596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
LFCFCLEESFSNPIISNEVSLKEGPFTISRRMSSNTRHHFLFNEGDEAAY
SDTAIDAHEDLESPPSNSPKSLNKITWLKTGVKSLAKKCQIVDDTDDGKT
NLIQSIFNLINANLGTGILAMPFVIRLGGYWGILITVIVGLLGNYTGKLL
VNLLYEETEDGRRVRVRDSYADIGEEFSPRFGRLMVHIMNCIEQFSHCVL
LLIMPGTVIAHTFPNSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCILS
VVMATAISICVLLYSLTNRTHWYSEMMPDFDADVTPISLGIVMVTFSSQA
YLPSIERCMREPELFEPLMDFSYTIVTVFKFAIGIIVFLAFTEKTDQIMT
LNLPHNIFGDVINISAIILSLSFYTVPMFTVFDILENQIVLPKKLEKLLD
TETKLLGSPYLTPNLLFRFMVVMLFILIAAGVPHFSLLMSFVGNTTGTIL
VLLYPNLFYIKLRWQTITNMEVVLNTLIILMALCSGCMGVTSAAREFYSV
FNEKT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010399	XLOC_010399	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018596	TCONS_00018596	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 99..488 e-value: 6.3E-61 score: 206.2

Blast

[Close]

BLAST of TCONS_00018596-protein vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 3.707e-55
Identity = 127/447 (28.41%), Postives = 227/447 (50.78%), Query Frame = 0

Query:   45 GDEAAYSDTAIDAHEDLESPPSNSPKSLNKITWLKTGVKSLAKKCQIVDDTDDGKTNLIQSIFNLINANLGTGILAMPFVIRLGGYWGILITVIVGLLGNYTGKLLVNLLYEETEDGRRVRVRDSYADIGEE-FSPRF---GRLMVHIMNCIEQFSHCVLLLIMPGTVIAHTFPNSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCILSVVMATAISICVLLYSLTNRTHWYSEMMPDF-DADVTPISLGIVMVTFSSQAYLPSIERCMREPELFEPLMDFSYTIVTVFKFAIGIIVFLAFTEKTDQIMTLNLPHNIFGDVINISAIILSLSFYTVPMFTVFDILENQIVLPKKLEKLLDTETKLLGSPYLTPNLLFRFMVVMLFILIAAGVPHFSLLMSFVGNTTGTILVLLYPNLFYIKLRWQTITNMEVVLNTLI-ILMALCS 485
            GDE A +    D H    S     P          +G K            D  K    ++ +N+ NA  G  +L +P+ I  GGY G+ + +   ++  YTGK+L+  LYEE EDG  VRVRDSY  I     +PRF   G  +V++   IE    C+L +++ G ++ ++FP   +S+ +W  + + +++P   ++ +  V+   +L  +    I+I V+ Y L+    W  E +  + D    PIS+GI++ +++SQ +LPS+E  M++P  F  +M++++    V K    ++ +L + ++T +++T NLP +I   V+NI  +  +L  Y +P F   ++LE  +   ++  +              +  L  R  +V+  +L+A  VPHF+LLM   G+ TG  L  L P+LF+++L W+ +   +V  +  I ++  +CS
Sbjct:   71 GDEGAEAPVEGDIHYQRGSGAPLPP----------SGSKDQVGGGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPGSIRA-VVNIFLVAKALLSYPLPFFAAVEVLEKSLF--QEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICS 504

The following BLAST results are available for this feature:

BLAST of TCONS_00018596-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018596-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VIAAT	3.707e-55	28.41	Vesicular inhibitory amino acid transporter OS=Hom...	[more]

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TCONS_00018596-protein (polypeptide) - C. hemisphaerica