TCONS_00018585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018585
Unique NameTCONS_00018585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018585 ID=TCONS_00018585|Name=TCONS_00018585|organism=Clytia hemisphaerica|type=transcript|length=278bp
TCTATCTTTAAACTAGTTggaactttcaaaattgataacAATAATTATTT
AAAATAACACAAAATCTGGACAGAAAATATCCTTTTACTTTATACTATAC
ATAAATCAATGTTAGGATATGCGCCGGCCTTTGACTATTCAACTAAAACG
GCAATCAAATGCAAAAATGTAGTTCCAAGTACGGAGACTTCATACTCAAA
CGAGTTTTATTCAAATAAACTCTCCTTAGGAAAACCTTTTAGTCTccttg
aaaattaaaagaaagctGCTGCTTGCCG
Run BLAST on NCBI

transcript from alignment at sc0000301:6441..6718

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018585 ID=TCONS_00018585|Name=TCONS_00018585|organism=Clytia hemisphaerica|type=transcript|length=278bp|location=Sequence derived from alignment at sc0000301:6441..6718 (Clytia hemisphaerica)
CGGCAAGCAGCagctttcttttaattttcaaggAGACTAAAAGGTTTTCC
TAAGGAGAGTTTATTTGAATAAAACTCGTTTGAGTATGAAGTCTCCGTAC
TTGGAACTACATTTTTGCATTTGATTGCCGTTTTAGTTGAATAGTCAAAG
GCCGGCGCATATCCTAACATTGATTTATGTATAGTATAAAGTAAAAGGAT
ATTTTCTGTCCAGATTTTGTGTTATTTTAAATAATTATTgttatcaattt
tgaaagttccAACTAGTTTAAAGATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010388XLOC_010388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018585-exon-sc0000301-1491911889:6441..6718TCONS_00018585-exon-sc0000301-1491911889:6441..6718Clytia hemisphaericaexon
TCONS_00018585-exon-sc0000301-1510915933:6441..6718TCONS_00018585-exon-sc0000301-1510915933:6441..6718Clytia hemisphaericaexon
TCONS_00018585-exon-sc0000301-1575043694:6441..6718TCONS_00018585-exon-sc0000301-1575043694:6441..6718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:6441..6718 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15724	1.09676	0.574734	0.340288	5.02918	2.69574	4.22359	5.49864	2.45731	0.529834	3.08562	0.338061	0	2.71049	0	0.309319	0	0	2.15837	0.564645	3.25838	4.2441	7.4416	8.94265	1.08998	1.08952	1.39205	1.2323	4.85989	4.86684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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