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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018574 ID=TCONS_00018574|Name=TCONS_00018574|organism=Clytia hemisphaerica|type=transcript|length=3125bpRun BLAST on NCBI protein sequence of TCONS_00018574-protein >TCONS_00018574-protein ID=TCONS_00018574-protein|Name=TCONS_00018574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp MDFSKFSDDNFDVKDWVNHALQPPKDTNVSVENYASNLVMKLQLFIQEVSRun BLAST on NCBI transcript from alignment at sc0000301:161428..175809- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018574 ID=TCONS_00018574|Name=TCONS_00018574|organism=Clytia hemisphaerica|type=transcript|length=14382bp|location=Sequence derived from alignment at sc0000301:161428..175809- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000301:161428..175809- >TCONS_00018574 ID=TCONS_00018574|Name=TCONS_00018574|organism=Clytia hemisphaerica|type=CDS|length=49434bp|location=Sequence derived from alignment at sc0000301:161428..175809- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018574 vs. Swiss-Prot (Human)
Match: COG7 (Conserved oligomeric Golgi complex subunit 7 OS=Homo sapiens GN=COG7 PE=1 SV=1) HSP 1 Score: 439.884 bits (1130), Expect = 9.126e-139 Identity = 278/782 (35.55%), Postives = 440/782 (56.27%), Query Frame = 2
Query: 281 MDFSKFSDDNFDVKDWVNHALQPPKDTNVS--VENYASNLVMKLQLFIQEVSKSLEETSQVALNNIPRVLREVENIKIETSLLKNQMSMVKDDIRKVEENTASSMKKLVEIDGVKCRMQDACNALQEADKWTILSSEADESFERGDLNQVAEKLIGMQKSLEVLKDVPDYNERLKVLQNHKNKLEALLSPTLVQIFNKHDLDDARHYVELFAQLDRLPQLQLYYNNCHKSSLFKTWRSVREDPNKPMTSWLPIFFDHLLALWHREISWCGQVFPDPIQALCVLMSQTLNSVKPSINDCIIETL-RDG-EDNLDTLIQLQNGTSRFVQGLEKAVGTFQGNLTTEKNAHLEQLLLVIRSAFTEXXXXXXXXXXXXXMTVIDAFSVESLELSDCAESLSDYIADAFKSADKALDSCLKFTNAYGSVGLIDAYKIFFSAFFGCINEVLHKLRKHYSLDVDSKQDGSQSLDDTTKQWSNFQYAFKMIEMCGLLLLKTQEFRQRVFDEL---------NVCV--------EQIV--HENGEQTP--SNNYL-KSHPTEWDKVVELQQMMLTYEMEA-----ILPSINEHVKKLNEQSXXXXXXXXXXXXKRQLLTVPKMEIWCRSE-KESVDGALPTFSLSPLPYITHIGDSLLTLPQQLEPFFVQDQNNNLLTALKVGQIPYQEQDGAHYDH------QWLESFARGAMNVYAEAILKVTMVTPYATRQLIADIEYFFNILSALEIEPIGELQQIKQLLETDGEEFTSIAQKQSMDEGLVKTICKMR 2512
MDFSKF D+FDVK+W+N A + S + +A+ LVMKLQLFIQEV+ ++EETS AL N+P+VLR+VE +K E S LK QM +VK+DI+K E++T+ SM+ LVEID VK RMQ A +LQEADKW+ LS++ +E+F+ D+ ++ KL GMQ SL +L D PDY+E+ L+ KN+LEAL SP +V F +D ++ +V++F ++DR+PQL YY CHK L W+ + + + + L +D LL WH +I W QVF P + + VL+ QTL ++ PS+ C+ + R G E L L++ + T+ F +GLE A+ +L + +L+ + + Y L+Y ++++ L+ + A +E E+ DC + LS + F A A+D C++FTN G+ GL+ A K F+ + L +RK LD Q + W+ FQ + ++I CG LL +F Q++ + + + C E I+ +N + P NYL K +P E+ ++E+ + T + + +L + + +LN+Q+H AFD +F+ K+QLL + KM+ W + E++ LP FSL+PL YI++IG +++LP LEPF Q+ ++ L AL G++P+ + G WL S AR M Y +AIL++ ++P++ +QL DI+Y N++ AL ++P LQ I LL+T E++ ++ + + L T+ MR
Sbjct: 1 MDFSKFLADDFDVKEWINAAFRAGSKEAASGKADGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQAVDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQS-DLSLDRQLTGLYDALLGAWHTQIQWATQVFQKPHEVVMVLLIQTLGALMPSLPSCLSNGVERAGPEQELTRLLEFYDATAHFAKGLEMAL---LPHLHEHNLVKVTELVDAVYDPYKPYQLKYGDMEESNLLIQMSAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCVRFTNGLGTCGLLSALKSLFAKYVSDFTSTLQSIRKKCKLDHIPPNSLFQ------EDWTAFQNSIRIIATCGELLRHCGDFEQQLANRILSTAGKYLSDSCSPRSLAGFQESILTDKKNSAKNPWQEYNYLQKDNPAEYASLMEI---LYTLKEKGSSNHNLLAAPRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDELPAFSLTPLEYISNIGQYIMSLPLNLEPFVTQE-DSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELSPHSAKQLATDIDYLINVMDALGLQPSRTLQHIVTLLKTRPEDYRQVS--KGLPRRLATTVATMR 766 The following BLAST results are available for this feature:
BLAST of TCONS_00018574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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