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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018570 ID=TCONS_00018570|Name=TCONS_00018570|organism=Clytia hemisphaerica|type=transcript|length=3317bpRun BLAST on NCBI protein sequence of Nucleosome assembly protein >TCONS_00018570-protein ID=TCONS_00018570-protein|Name=Nucleosome assembly protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MPPKPEVDNEEISDEEIEAAEAGPNMAELMKNPELIAAVQAKLNGLLGDSRun BLAST on NCBI transcript from alignment at sc0000301:34263..51972- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018570 ID=TCONS_00018570|Name=TCONS_00018570|organism=Clytia hemisphaerica|type=transcript|length=17710bp|location=Sequence derived from alignment at sc0000301:34263..51972- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000301:34263..51972- >TCONS_00018570 ID=TCONS_00018570|Name=TCONS_00018570|organism=Clytia hemisphaerica|type=CDS|length=11070bp|location=Sequence derived from alignment at sc0000301:34263..51972- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018570 vs. Swiss-Prot (Human)
Match: NP1L1 (Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 5.631e-89 Identity = 177/341 (51.91%), Postives = 235/341 (68.91%), Query Frame = 3
Query: 465 AELMKNPELIAAVQAKLNGLLGDSTGFIDMLPECVKRRVHALKNIQVECAKLEGKFYEEAHQLEMKYAGLFKPLYEKRSEIVNAIHEPTDEESKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFADEVKSKLKLDMDENT------KGIPEFWLTAMKNVELLGDMIQDHDEEILKHLTDVKLIFTXXXXXXXXXXXMGFVLEFMFQPNEHFTNTALTKTYKMKSEPDADDPFSFEGPDIVSCTGCKIDWKKGMNITXXXXXXXXXXXGRGQTRVVTKTVQNDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGHFFRERFIPKAVLFYT 1469
++M+NP+++AA+Q +L+GL+ TG+I+ LP VKRRV+ALKN+QV+CA++E KFYEE H LE KYA L++PL++KR EI+NAI+EPT+EE +W E+E ++E+K K K++ ++ KGIPEFWLT KNV+LL DM+Q+HDE ILKHL D+K+ F+ + M FVLEF F+PNE+FTN LTKTY+M+SEPD DPFSF+GP+I+ CTGC+IDWKKG N+T K +KKKQKHKGRG R VTKTV NDS F F P D+D++ EA+LAADFEIGHF RER IP++VL++T
Sbjct: 40 VQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDE------------------------------ISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQP------MSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDS-FFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFT 343 The following BLAST results are available for this feature:
BLAST of TCONS_00018570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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