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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018568 ID=TCONS_00018568|Name=TCONS_00018568|organism=Clytia hemisphaerica|type=transcript|length=1353bp
AAAAAACATTATaaagtttatttaaaaaaaactctgCTTCTGTTGGCAAG
GAAAGCAAGAACAAGAAGCATACAAGTTGTGCAAGATCACTTTTGAAGAA
CGATGGAAACATCGAGCAAAATGTTTTCGTCACTTACTCCGCCACAGCTT
CTATTTTGCGAGGAAGATGATCGTTATTTGGATTATGATGTTGATGTTTT
GAAGAATTTCCGTCTGTTTTCGTCCACATTTTCTGTCGATGAGTTGATGA
AGGAGATCCCATGGAGCACAGAACATCCCAGCACTTCTGCACAACCTGTT
TACAAGAAGTCAGTACGCCAAGATTGCATGTGGTCAAGAAAAGTGGATAC
CAAAGAATCTTTGGAAATCAATATCAACAATAACTGTTTACCTTCATCAC
AAACTTACAATTTGGTTCCTCCCGACCTTATCTTATCCGTACGCAAAAAA
GGACTTTTCCAACCATGCACGTACGATTTACCGAGCTCGTCGGAAAGTTT
TCACTCGTCAGATGAAGAGATACGAATGCAAGGAGATGTAAACATATCAC
CAAACTCAACAAATCTCGAAAATGATGAAGAAGTAAACGTGGTGGACCTC
TCACCTCACTCTTGTGTCGGTCTGCGTGCAGGCCAAAGTTTTTACTCTCA
TGACAAATCTCCGTTGCACACACCTTACCGTACGGAAAACGAAGTCAACG
AGCACTCTCTACCTTGCACCACTCCTCGTATGAAAGAATATCTTTTTGAC
GAACCTACACGTGTCAATCAGAAATCTTGTAACCAATCATCTTGTAACCT
TTCACCTGATCGAATGCCTTACCAAATCAAGGAGATAGCTATGAAAAACT
GTACGGATAAAGTGAGCAAAATTAGATATAcagcaaaaaagaagaaaaaa
gaagaaacaccGATTGATGTAAAACAGAGCCCGCAAAAGCGGAAGTCCAA
TCCCTCAATGCAACATAATATGATGGAGAGAGTTCGACGGATAAATCTAC
GTGAAAAGTATCAAAATCTGCGCAAAGAGCTCCCCTCTATTTCAGGAAAC
GTAAAAGTACCGAAAGTAAAAATTCTTAAGGAAGCTATAATGGAACTAAA
ACACCTTACATATGAAGAAAGTAACCTGAATCATATTAAGCGTTCTTTGA
TTGACCGTTACGAAGATTTGCAGCAGAAGTACTCTGATCTACATCAGCAT
TCTGCAGCATCTTAAACGTAACATTTACATTTGGCTCGACTCTTTTGTAT
TCTTTGTATCTatctgtaaaatattttgtgTTAACCTAAACcataatctt
tttattttaccaaGGAGATCTTCTCTCCCTCACCAATTCGTGTTTTCTAA
ATT Run BLAST on NCBI protein sequence of TCONS_00018568-protein >TCONS_00018568-protein ID=TCONS_00018568-protein|Name=TCONS_00018568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
METSSKMFSSLTPPQLLFCEEDDRYLDYDVDVLKNFRLFSSTFSVDELMK
EIPWSTEHPSTSAQPVYKKSVRQDCMWSRKVDTKESLEININNNCLPSSQ
TYNLVPPDLILSVRKKGLFQPCTYDLPSSSESFHSSDEEIRMQGDVNISP
NSTNLENDEEVNVVDLSPHSCVGLRAGQSFYSHDKSPLHTPYRTENEVNE
HSLPCTTPRMKEYLFDEPTRVNQKSCNQSSCNLSPDRMPYQIKEIAMKNC
TDKVSKIRYTAKKKKKEETPIDVKQSPQKRKSNPSMQHNMMERVRRINLR
EKYQNLRKELPSISGNVKVPKVKILKEAIMELKHLTYEESNLNHIKRSLI
DRYEDLQQKYSDLHQHSAAS Run BLAST on NCBI transcript from alignment at sc0000301:18409..23860- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018568 ID=TCONS_00018568|Name=TCONS_00018568|organism=Clytia hemisphaerica|type=transcript|length=5452bp|location=Sequence derived from alignment at sc0000301:18409..23860- (Clytia hemisphaerica)
AAAAAACATTATAAAGTTTATTTAAAAAAAACTCTGCTTCTGTTGGCAAG
GAGTGAGTTGTTCTTATAAGAAGTATTTACTTTTGCTCTTCCAAAAGAGG
TGTCATGCAAAAGGTTTTCTCCAAGAGCGCGGTCACACCAAATGATTTAC
CTCCGCTTATATAGCTGTTGTCATAACAATAAATATTTTTATCTATTTTT
TAATGTGACCACTCGAAAAAATGGAAGAAAAAATCCTAAATCCGAGGAAT
CACCTGTTTTAATAAGCGAAAAATAAGACTTGCTCGATAGCAAGTCTTAT
CATAGGGAGTTTCTAAACATCGACCAGAAATGGCGACCACGACCAGCGAC
CACGACTGGCGACCAGATAAAGTTGGGTTATCGAGTTTTTCCTCTTTCTC
CACCGTAGAGTCTTTCTCTTATGATCATTTATTTATCGAATTGAAGAGTA
AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGGTAACGTCAAAAGTCACTTTTAGTATTCTCTAGCTAGAGT
AATTCTCAGCCACGTGCTCAGTGGTTCATTTGAAAGCCACATCAGGACTC
GATTTGGATGCTCTCTACGGTGGAGAGAGCAGGTAAACTCGATAACCCAA
ATTTATCTGGTCGCCGGTCGTGGTCGTCGGTCGTGGTCGCCATCTCTGGT
CGATGTTTAGAAACTCCCCTTATCGTAGTTTAAGAAGAATTCCTTTATGT
TTAAATAAATAGGTCTATTGAAAATGGCGATTTGTGTTTACTTTTCAAAT
ATTGAAAACTTTGAAAAGATGTGCACATCTTTTTTTGCACACGCCATTTA
CATTCACACACAAGAGAAAAACAATTAAATGGAAAGATTTTATTTCGATT
GAATGAATTTTTATCCACACAAATTTTTAGACTTATTAGAAATGCTGATT
GAAGTTTTCCGACGCGCCGCTTAAAATAAGCAAAAATGGTGATTCCTTTT
TAGCATTAGCTAAACTTATATTTTGGTGTGACCGCGCTCCAAATGAAGAG
CTATTAGAATGTCAAATATCAAAGAATAGGCTTCTTCCTGTGAAAACAAT
GCGCACCACGTGTAACGAGAGCTTTAAGTAAACAGGTTGTATAATTTGCT
TTTTACTTATCTTCGCAAACTCAGTTGAAATTTATTGATTGTTATTTTGC
TTAGAAGCAAGAACAAGAAGCATACAAGTTGTGCAAGATCACTTTTGAAG
AACGATGGAAACATCGAGCAAAATGTTTTCGTCACTTACTCCGCCACAGC
TTCTATTTTGCGAGGAAGATGATCGTTATTTGGATTATGATGTTGATGTT
TTGAAGAATTTCCGTCTGTTTTCGTCCACATTTTCTGTCGATGAGTTGAT
GAAGGAGATCCCATGGAGCACAGAACATCCCAGCACTTCTGCACAACCTG
TTTACAAGAAGTCAGTACGCCAAGATTGCATGTGGTCAAGAAAAGTGGAT
ACCAAAGAATCTTTGGAAATCAATATCAACAATAACTGTTTACCTTCATC
ACAAACTTACAATTTGGTTCCTCCCGACCTTATCTTATCCGTACGCAAAA
AAGGACTTTTCCAACCATGCACGTACGATTTACCGAGCTCGTCGGAAAGT
TTTCACTCGTCAGATGAAGAGATACGAATGCAAGGAGATGTAAACATATC
ACCAAACTCAACAAATCTCGAAAATGGTAAGGATATTTTCTTTGTTAATA
TTTTTCCGAGGGTTTGAATTATAAAAATATTAATCCCTTTTCTGTTCGAT
GGGGAAACTACATGTTTTTTTTTTATAAGCAAGTGTCTGCCCCTACATCA
GGGGCAGACACTTGCATTATGCTTAGCATTCTATTGTTCTCAAACAATAG
AGCCATTGTTTAGGTACCAAAAACTGAGCCTGCATATGCTTATAAACGTT
ATGCTTATAAAAGAAAAAACATGTAATGGTAATAGCTTTTTTAAAAGAAC
ATCTATAATTTTTGAAGCCTTCGGATGTTTTAACTTTTTTGATTTCAAGC
CTAAAAATGTTCTTAACATGTTTTTATTTTCACCTTTTTGTGAGCATTTT
TGCCTATTTTCCTATGAAACCGGTTGTTTTAGAGTATGCAAAGCCTTAAA
GTATTCTTAACTTGTTCTTGATATTTTTTTGGTCAACGAAGCCTTATGAT
CTTATAAAGTTTGCTCGTATAAAAACAAAAACGCGCAACGTCTAAAATCC
CTCAATTACACCCTAAAGCAGCCAACGAGCCCATTTCCCCGAAATATCTG
TTTCCCTTTTCCAGGAGAGGGCTTTTTTTGAAAAATGGGGAAACAGATCC
GATTTTCTAGGAGAGACCTTTTCCTTAAAACTATCTGTTTCCCCGCTCCA
GCTGATGACGTCATCAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATGAATAAGAACAGTTTGAGGCTTAAAGTCAAAGTGC
CAAAAAAATAAGAGCAGCCGAGTCTCAGAAAAAATTTTACTGGTTCTTAT
GAAAAAAGTGTAAAGCTTTGGACTTTCTTTTGGCCACATTTTTATTTAGC
TTCAAGATTTTATCTGGGAACCTCCCCTAAAAGCCTTTTATTATTAGGGT
TGAAATAAAACATGGACGCTGGGCGAAATAAGAGATTTCCAATCGTGGAA
ATATCTTGAAAATATGATATTTCCATATACTTTTGTAAATATGGGAAATA
TGACTTTTCTACATTTGTGGAAATACCATATTTCATGATATTTCCAAATC
TGAAATATATCCAGAAATATCATATTTTCAAAATGTTTCCAACTTTTGGA
AATATGATATTTCCAAAAATATGAAATATCTTGAAAATATGATGTGTCAA
TGAATTTCAGATTTGGAAATATCATTAAATATGAAATATCATATTTTAAA
TAATCTCCAGGAATGGAAATCTCTTATTTCGCCCAGTTGGATTGAAAGCG
GGATGTTACAAGAGATTTTACGCGAACCCTCTTACTGAAACGAATTTGTA
TAATTTCTTACTTTGTTGCAGCTGCATATCCTTCCAAGTACAGAAATTAC
TCACAGTGAAACCCAAAAAGTTAAAAGCATTCAATAAGTCTTACTCTAAA
AGGTGCCTAATTATCTGGTACTAGATGCGGAAATTTGTTACACGACACGC
TTTTCACTGAAGGTCGGGCAAATTTTAACCTTAGAGCTTTAGCGTGAGTG
ACCGTCAACAATATGCCATCGTATATCAGATAAGTTGTCAAATGAACGCC
CGTCCCGTCCCCGCATGCTAATTTTCCGATTTTTTTCCAACCTCTAACCT
TTGTAAAGGTCCCACAAACCTAGCTTTAATCAATAAATTATGATAATTAC
CTTATTTGTCCACCCTCTGCATCCTCCTGTCTATTAGGCATATGAGAGTA
ATAATGTTTTGAAATTCTTACGTTATAAAAAAATGTGTGTTTGTATTTTT
TCAAGAATCTTTTATCTTTTTAGATGAAGAAGTAAACGTGGTGGACCTCT
CACCTCACTCTTGTGTCGGTCTGCGTGCAGGCCAAAGTTTTTACTCTCAT
GACAAATCTCCGTTGCACACACCTTACCGTACGGAAAACGAAGTCAACGA
GCACTCTCTACCTTGCACCACTCCTCGTATGAAAGAATATCTTTTTGACG
AACCTACACGTGTCAATCAGAAATCTTGTAACCAATCATCTTGTAACCTT
TCACCTGATCGAATGCCTTACCAAATCAAGGAGATAGCTATGAAAAACTG
TACGGATAAAGTGAGCAAAATTAGATATACAGCAAAAAAGAAGAAAAAAG
AAGAAACACCGATTGATGTAAAACAGAGCCCGCAAAAGCGGAAGTCCAAT
CCCTCAATGCAACATAATATGATGGAGAGAGTTCGACGGATAAATCTACG
TGAAAAGTATCAAAATCTGCGCAAAGAGCTCCCCTCTATTTCAGGAAACG
TAAAAGTACCGAAAGTAAAAATTCTTAAGGAAGCTATAATGGAACTAAAA
CACCTTACATATGAAGAAAGTAACCTGAATCATATTAAGCGTTCTTTGAT
TGACCGTTACGAAGATTTGCAGCAGAAGTACTCTGATCTACATCAGCATT
CTGCAGCATCTTAAACGTAACATTTACATTTGGCTCGACTCTTTTGTATT
CTTTGTATCTATCTGTAAAATATTTTGTGTTAACCTAAACCATAATCTTT
TTATTTTACCAAGGAGATCTTCTCTCCCTCACCAATTCGTGTTTTCTAAA
TT Coding sequence (CDS) from alignment at sc0000301:18409..23860- >TCONS_00018568 ID=TCONS_00018568|Name=TCONS_00018568|organism=Clytia hemisphaerica|type=CDS|length=2226bp|location=Sequence derived from alignment at sc0000301:18409..23860- (Clytia hemisphaerica)
ATGAAGAAGTAAACGTGGTGGACCTCTCACCTCACTCTTGTGTCGGTCTG
CGTGCAGGCCAAAGTTTTTACTCTCATGACAAATCTCCGTTGCACACACC
TTACCGTACGGAAAACGAAGTCAACGAGCACTCTCTACCTTGCACCACTC
CTCGTATGAAAGAATATCTTTTTGACGAACCTACACGTGTCAATCAGAAA
TCTTGTAACCAATCATCTTGTAACCTTTCACCTGATCGAATGCCTTACCA
AATCAAGGAGATAGCTATGAAAAACTGTACGGATAAAGTGAGCAAAATTA
GATATACAGCAAAAAAGAAGAAAAAAGAAGAAACACCGATTGATGTAAAA
CAGAGCCCGCAAAAGCGGAAGTCCAATCCCTCAATGCAACATAATATGAT
GGAGAGAGTTCGACGGATAAATCTACGTGAAAAGTATCAAAATCTGCGCA
AAGAGCTCCCCTCTATTTCAGGAAACGTAAAAGTACCGAAAGTAAAAATT
CTTAAGGAAGCTATAATGGAACTAAAACACCTTACATATGAAGAAAGTAA
CCTGAATCATATTAAGCGTTCTTTGATTGACCGTTACGAAGATTTGCAGC
AGAAGTACTCTGATCTACATCAGCATTCTGCAGCATCTTAAATGGAAACA
TCGAGCAAAATGTTTTCGTCACTTACTCCGCCACAGCTTCTATTTTGCGA
GGAAGATGATCGTTATTTGGATTATGATGTTGATGTTTTGAAGAATTTCC
GTCTGTTTTCGTCCACATTTTCTGTCGATGAGTTGATGAAGGAGATCCCA
TGGAGCACAGAACATCCCAGCACTTCTGCACAACCTGTTTACAAGAAGTC
AGTACGCCAAGATTGCATGTGGTCAAGAAAAGTGGATACCAAAGAATCTT
TGGAAATCAATATCAACAATAACTGTTTACCTTCATCACAAACTTACAAT
TTGGTTCCTCCCGACCTTATCTTATCCGTACGCAAAAAAGGACTTTTCCA
ACCATGCACGTACGATTTACCGAGCTCGTCGGAAAGTTTTCACTCGTCAG
ATGAAGAGATACGAATGCAAGGAGATGTAAACATATCACCAAACTCAACA
AATCTCGAAAATGATGAAGAAGTAAACGTGGTGGACCTCTCACCTCACTC
TTGTGTCGGTCTGCGTGCAGGCCAAAGTTTTTACTCTCATGACAAATCTC
CGTTGCACACACCTTACCGTACGGAAAACGAAGTCAACGAGCACTCTCTA
CCTTGCACCACTCCTCGTATGAAAGAATATCTTTTTGACGAACCTACACG
TGTCAATCAGAAATCTTGTAACCAATCATCTTGTAACCTTTCACCTGATC
GAATGCCTTACCAAATCAAGGAGATAGCTATGAAAAACTGTACGGATAAA
GTGAGCAAAATTAGATATACAGCAAAAAAGAAGAAAAAAGAAGAAACACC
GATTGATGTAAAACAGAGCCCGCAAAAGCGGAAGTCCAATCCCTCAATGC
AACATAATATGATGGAGAGAGTTCGACGGATAAATCTACGTGAAAAGTAT
CAAAATCTGCGCAAAGAGCTCCCCTCTATTTCAGGAAACGTAAAAGTACC
GAAAGTAAAAATTCTTAAGGAAGCTATAATGGAACTAAAACACCTTACAT
ATGAAGAAAGTAACCTGAATCATATTAAGCGTTCTTTGATTGACCGTTAC
GAAGATTTGCAGCAGAAGTACTCTGATCTACATCAGCATTCTGCAGCATC
TTAAATGGAAACATCGAGCAAAATGTTTTCGTCACTTACTCCGCCACAGC
TTCTATTTTGCGAGGAAGATGATCGTTATTTGGATTATGATGTTGATGTT
TTGAAGAATTTCCGTCTGTTTTCGTCCACATTTTCTGTCGATGAGTTGAT
GAAGGAGATCCCATGGAGCACAGAACATCCCAGCACTTCTGCACAACCTG
TTTACAAGAAGTCAGTACGCCAAGATTGCATGTGGTCAAGAAAAGTGGAT
ACCAAAGAATCTTTGGAAATCAATATCAACAATAACTGTTTACCTTCATC
ACAAACTTACAATTTGGTTCCTCCCGACCTTATCTTATCCGTACGCAAAA
AAGGACTTTTCCAACCATGCACGTACGATTTACCGAGCTCGTCGGAAAGT
TTTCACTCGTCAGATGAAGAGATACGAATGCAAGGAGATGTAAACATATC
ACCAAACTCAACAAATCTCGAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018568-exon-sc0000301-1575043694:23809..23860 | TCONS_00018568-exon-sc0000301-1575043694:23809..23860 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1575043694:21485..22006 | TCONS_00018568-exon-sc0000301-1575043694:21485..22006 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1575043694:18409..19187 | TCONS_00018568-exon-sc0000301-1575043694:18409..19187 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1510915933:23809..23860 | TCONS_00018568-exon-sc0000301-1510915933:23809..23860 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1510915933:21485..22006 | TCONS_00018568-exon-sc0000301-1510915933:21485..22006 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1510915933:18409..19187 | TCONS_00018568-exon-sc0000301-1510915933:18409..19187 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1491911889:23809..23860 | TCONS_00018568-exon-sc0000301-1491911889:23809..23860 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1491911889:21485..22006 | TCONS_00018568-exon-sc0000301-1491911889:21485..22006 | Clytia hemisphaerica | exon |
| TCONS_00018568-exon-sc0000301-1491911889:18409..19187 | TCONS_00018568-exon-sc0000301-1491911889:18409..19187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:18409..23860 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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