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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018565 ID=TCONS_00018565|Name=TCONS_00018565|organism=Clytia hemisphaerica|type=transcript|length=1872bp
AGTTTACACGGGTAGCCAACTCGGTTATAATGCGGACCAAATGGGAACAT
TGCAAGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACTG
ACGTTGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAAA
TGGTAACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAGA
ATCATAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTTG
ATTCGGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCCT
CCAAAGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTGT
ACTATGTTAAATCAAgagatttttattattttgataagAACAGACAAGCT
TTTGAAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGCC
GCCCAACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGACC
TTGGTGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATCT
GACCAAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGGA
GTTGTTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACAT
GGTCCGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAACT
TTGCCACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCACC
TTCAGGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGTG
AAGGTGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCATC
ATTTGGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCAA
ATGGCAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATCC
TTCCTTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCTA
TCCGTTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAATT
GTCCAGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCGA
GTATCAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCATT
CTGTTTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAATT
CCAAAGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACCG
TTGGATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGGA
AGTCTTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGGT
TATTGTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTCG
AAAGGAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATCA
CCTGATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATAA
TCACAACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTATC
ACGAGAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGTA
AATAAGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCGG
TATAGAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgattt
aGACAGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATGA
AAGTCAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTTT
CGATTCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGAA
AACTTAATGTTGTCATCTTCNN Run BLAST on NCBI transcript from alignment at sc0000301:345003..350921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018565 ID=TCONS_00018565|Name=TCONS_00018565|organism=Clytia hemisphaerica|type=transcript|length=5919bp|location=Sequence derived from alignment at sc0000301:345003..350921+ (Clytia hemisphaerica)
AGTTTACACGGGTAGCCAACTCGGTTATAATGCGGACCAAATGGGAACAT
TGCAAGGTTggtgtttcagaaaaaaactcttAATGACAAGGTTGCCAAGG
TTACCCCTCGAATAATCATCAGTTCCGAagtttttaaaagttcaacTCGT
TCaacaaagtaaattttttgagtGATCGCAAAGATGAATAATTATGTAAT
GCAATAAAACCTATAAAAGGcagacactcaattagcggaccctctgattg
gTGGACCCTCGGACAAATTCTTTTGCACGAAATTGCAAAAACCCCTATTT
TCGCTCTCCAATTAGCGAGAATCGAATATCAAACTGGTCAcagatttttt
ctttgaagCACGTATTAGTTTTATTATCCAAAttagttttaaaagtttta
agtttTCTCTTGACCCATTCGACGAATTTAGCCGGGCCAACGAAATCATA
AACGCTTGCACTTCAACCCCCAGCCATCAGCTAGATTCAACCTTTTCCCA
GTAGCTCGAGCTCTGGTTCCGGTATTCTGTTCGAATGATTgctacaatat
ttttttttcaactatGTTATCTGGTTCATGTTTGCAAACTAGTGATTTCC
CCTATGAACGGAGTCCAAATCTGACGATCCCTTTCTACCTTTCTTGTAAG
TACGGTACCCTCTGACTTTCAAGTTAATCTTGTTCAACTTCTATTTTTGT
GTTATATTATATTTCTATAGACATTCTTTAAATCGTGAAAATTAAATTGT
TGCGTCTCAAtaacctttctcttgttcttctatgTCCTAGTGTCCTGCAC
AAGTTCTAAAGACTCCCttacaccctgggatggcctaatttcaaaattgg
agctcttagatgaaaaagttctaaaatttgGACGCTTCTAGTTAGCGGAC
GTTTCTCCGGTGGTatccgctaattagaggctcCATCGGTGTCAAGTCAA
TGTAGAAGAGGGGTTAGAAAACGATTTTTCTAATCTTCTggagaaaaaaa
gacaaatgaatCAATTTTACTTGAACAGGAAAAAAGAGATGTgagagaaa
aaagttttttatttgagggTTGATCGTGGTTGTGGTCATCTTTCGACCGC
ATGTTTTACGGTTTTTTGTGTTCGAAGGGTTTTAAAAACGTTGACAGAAA
ATGAGATAAAAAGAGCGaagtagaaaaaagaaaaaagaatggaGAAAAGG
AATCATCAAGCAGAATGGAAATTGGAAAATATGTGGAAAGTTTTTCTGTT
aagaaaatagataaaaattgTTGTTGATGTTagtttataaaacaaaaaaa
atcatgaagATTTTCCTTTCGAACTAATTAGAATGTCATTCTTTAGAAAC
GCCTTTCGAGAAGTATCTTTGATTTTCACAGCTCAAAGTTTTCTTTTGAC
TTTTAGGAAGTCACAGTCTTTTTGTCTTCTGTTTTTGCAGTTAACTTCTT
TTTTGGTGATATTTCTACTGTATGATCTCTAATATCTTGGGGAGCAACAT
GCTGCTATTTAAAATGATTACTATCCCTTCCTAAACAAAATAGTTATTGA
TTGGAAACACATCAAATCGAAATCCAATTTCAGTATATAGATTCCTAGCT
GGTAAACATTTCAAACGTTGTATATGGGCgtattttgttgttattttaTG
GGCGTATGGGGGTGGGGTAaggggatgtgccgctggtccAGGTAACTTAG
GAAGTgttcataaagtatctactagaagggggtggaggatttttccaaaa
atcggaaaaaaaattcgcACCCCTATGTTCAAAGATTTTTCGAACCTCCC
CCTTAACCAAGCCAAAAacttttcccccccccccccttaaccaagccaaa
aacttttcccccccccccccttaaccaagccaaaaacttttccccccccc
ccccttaaccAAGCCAATAACTTTTCTCACCCCCTCCCCTccctaagaaa
attttttaataaataccCCCCTCTCGTGCAATCCTTGCCTTGTTCATAAG
TTAGATGAAAGTTGCTGAAATGTGAAATTGGATTTCAAACATCGCTTCCG
GAACTTTACAATCTCATTTATATCCTTTAATTTTTGTCTGttctttttgg
gaaattttatCGTAGCGAGTGTTATAACTGAGGCGCAACCGTTTTGCGcc
gacaaagaaaattttaaaattttaacccTCTCATTTAGCTAGGTGACCCT
AGGTGCTTCCTGTTAGTGCGAGAGTTATTGAAAACAAGACTAAGATTTCA
AGCTATATTActtaaaaattgagatttttgcaGCATGCAAAGACCATATA
TGCAAAGACAAATAATAGATTATGATTGGtgtaaagttttaaagaaaagt
tttcaaaaaaggcTCTGATAAATGGTTGAAAAACACTTGATTTTTGAATC
AACCTGGTGGGATGTCAAAacaatttccccccccccccctaaagaTAAGA
TGgcaaaaaattatctttcacCGTACCTTTTTTTTCTGGCACTTTACTAA
TGATTTTTTTAGCACGGGTGAAAAGAAATCAGCAACGTGTATTTGACAGA
CCTCCCTGTTGAACTGGTTGTGTTTAATCATTCTTTTCTGTGATTTTCCC
TTTCAACCTGGAAAAGGGTGATGATATGGCTCTAAACGAACCTTTTCAAT
ATTTGGCCACTTTCAGGAAATTCTAATTCAAAAGCTGATATCGatagcaa
aaataagaaaaaagcgaaaatgaaaagttgaaagaaaaataaaatcgaaC
TGGAAGAGAAATATAGAATTTcatctttttgtactttttttttGTACTTT
CTTTTCTTCTGAAGGGAATATATTTCCCTATATATATCGTACTTTTCTCT
AGCAAtgggatttgaaaataatataacttttttgggacttttcttttttc
tttttccaatttCAGCCGTTTTTTCTTTCGATTTACACCTTCCATCGAAt
tacttttttcttgaaaaccGTTTGTTTGGGGAAGAAATTGGTTAATGAAA
AAAGCCCCCACTCGACAAAGAAACGTGAGGAAAAAACACTTTAATAGGAT
TGATATAGCGAAAAGaagttttaaataaataaacataaatTTGATAACAA
GAAAGCCTGTTTCTAATAAGCAGATGGCAGcattaaaaacaaacatttta
tcCAACTTTGGATACTGTTTCTACAATCGCCTTTCCTTACATCTTTATGT
GCCTGCTATATCTTATGTAAAGACGTGAGGAAAGTTTGAGAGAGAAAATG
AACGAGAGCTTGTTGAAAGGTGAATGAAGGGTAATCCCTCTTTTGGCCTT
CTTTCTTATTTACTCCTTCTCCTAGTTGAAACTTGACTCGAATTGTTATC
AAATCAAACATGGAAGGATCATTTCATAGTTTCACTTCATTAAATCatct
tttttcattcttttatttcgtttttcttcctttttaaaaatattgttcct
cgaacaaaaacttttcatttacGATTTGATGAAGGACAAAATAAGTTTAT
TCACCCTCTACCCGAACaagaacaaatttctagttGACTGTGTTTTCAAC
CTGATGTTCTTTTCACTTAACACCCTATGCTAGATATTTCCCCATTATGC
AAACTATCCCTATTTATTCATTCTAAGTACTAATGAACTTTGTCTTTTTT
CGAGCcttgatgttttttttcctCTTCAATTTTGAGATGATTTTTTGCGT
TCAAATTAGAAGGAAGatatttgagcaaattttattattttaacacGGGA
AATTAGAATAGAATGGTTGCTGACTTTTAAGGTGAAGATTAGATGACCTT
TTACAAGTTTGATCAGGTTTATCAAATATTTAGGTGCTTTGTAAGGGTCA
AAGGTTGGCAAATCTGTCGATTATGTTTGGATTCAAAAGAATTCGTGTGT
CCTTCTTTAAAATCTATGTTGAGAGAAAAGACTTCACGACCTTGAGCTCA
AACCATATTGGCCTGTTCTTAGACGATTTTAAGCATTCAGTTTGAGTAGT
TGACACATCGTACATTATTTCGGTTCCTTTCTACCTTTCTTGCGTTTGTT
TGATCTACATTCGAAATAACATTCtaagttttgtatttttcttcatCGTT
CAGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACTGACG
TTGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAAATGG
TAACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAGAATC
ATAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTTGATT
CGGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCCTCCA
AAGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTGTACT
ATGTTAAATCAAgagatttttattattttgataagAACAGACAAGCTTTT
GAAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGCCGCC
CAACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGACCTTG
GTGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATCTGAC
CAAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGGAGTT
GTTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACATGGT
CCGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAACTTTG
CCACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCACCTTC
AGGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGTGAAG
GTGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCATCATT
TGGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCAAATG
GCAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATCCTTC
CTTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCTATCC
GTTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAATTGTC
CAGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCGAGTA
TCAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCATTCTG
TTTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAATTCCA
AAGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACCGTTG
GATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGGAAGT
CTTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGGTTAT
TGTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTCGAAA
GGAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATCACCT
GATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATAATCA
CAACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTATCACG
AGAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGTAAAT
AAGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCGGTAT
AGAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgatttaGA
CAGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATGAAAG
TCAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTTTCGA
TTCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGAAAAC
TTAATGTTGTCATCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018565-exon-sc0000301-1491911889:345003..345058 | TCONS_00018565-exon-sc0000301-1491911889:345003..345058 | Clytia hemisphaerica | exon |
| TCONS_00018565-exon-sc0000301-1510915933:345003..345058 | TCONS_00018565-exon-sc0000301-1510915933:345003..345058 | Clytia hemisphaerica | exon |
| TCONS_00018565-exon-sc0000301-1575043694:345003..345058 | TCONS_00018565-exon-sc0000301-1575043694:345003..345058 | Clytia hemisphaerica | exon |
| TCONS_00018565-exon-sc0000301-1491911889:349106..350921 | TCONS_00018565-exon-sc0000301-1491911889:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018565-exon-sc0000301-1510915933:349106..350921 | TCONS_00018565-exon-sc0000301-1510915933:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018565-exon-sc0000301-1575043694:349106..350921 | TCONS_00018565-exon-sc0000301-1575043694:349106..350921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:345003..350921 + |
Blast
BLAST of TCONS_00018565 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 399.053 bits (1024), Expect = 1.946e-131 Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 2
Query: 176 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1456
G+PQ+ + E E ++ IN+ G+ +ET TL +FP+TLLGD + Y+ R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE +++EGYI ++ER LP NE QR+VW LFE+P+SS ARI+A SV+VI++SI FCLETLP + N + +N T+ S S + P+F E CIIWFSFE+LVR + PSK F + +N ID++AI+PYFITL + L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+ E+++Y + SPD
Sbjct: 17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443
The following BLAST results are available for this feature:
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