|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018564 ID=TCONS_00018564|Name=TCONS_00018564|organism=Clytia hemisphaerica|type=transcript|length=1906bp
AGTTAATAATAGCGATGGCTTTTTTCAACGTCGTGAGTCATGTTTTGATG
TcgaaaagaagagagaaaaaaagcGACGAAGAGACGAATGGTCAACCACC
TTGGTCACCGGTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAG
AACGACTAAGTGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAA
TACTATGATGGATATCCTCAAGAGAACCACAAGAATCATAATtacattga
aacaaatgaaTCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCT
GTGGAATGATTTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGAT
ACGTTACTTGGTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAg
agatttttattattttgataagAACAGACAAGCTTTTGAAGCCATTCTGT
ATTATTACCAAACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATG
CCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTT
TATGCAGTTACAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCT
TACCGACGAACGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCT
GATTCTAGTCAAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTAT
CATCTTATCCATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAG
TGAACAACAACAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACA
AACGGTACGCTCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCG
TCAACCATGGTTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTG
AATATCTGGTGCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAA
TCCTTTCTTAACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCAC
CCTATCCATCAATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGG
TCCGGTTGGTTCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTT
GGCTTGCGTATCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGG
CATGTTGATATTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCA
TATTCTATGCGGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGAT
GCGTTTTGGTACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAA
AGTTCCCAAAACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCG
TTGGCGTGTTGACAATTGCATTGCCAGTACCGGTTATTGTGTccaatttt
gagtttttttacaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAA
CACACCGTCGGAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTC
AAAGCAATCATAAAGAGAACAACATCAATCATAATCACAACGAAGATCCT
CTCTTGACAACTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGC
TACATGGTGATTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAA
CCATATGGTGATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTT
TCACTGAAATAGAGatcattaaaattgatgatttaGACAGATGCTGATCG
CCAAGTTTTAActtttaattgtttttcttaATGAAAGTCAATGCTGTTAG
GTCTTAGCGAATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAA
CAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCAT
CTTCNN Run BLAST on NCBI transcript from alignment at sc0000301:344673..350921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018564 ID=TCONS_00018564|Name=TCONS_00018564|organism=Clytia hemisphaerica|type=transcript|length=6249bp|location=Sequence derived from alignment at sc0000301:344673..350921+ (Clytia hemisphaerica)
AGTTAATAATAGCGATGGCTTTTTTCAACGTCGTGAGTCATGTTTTGATG
TcgaaaagaagagagaaaaaaagcGACGAAGAGACGAATGGTAAGAGAAG
TTCAACACTTGTCCGAGTTCAATATTTTACGGTATTGCCCGAAGAAACAG
TttatgactttttaaagtagattcttttgtgtttaatAACACTCAATAAT
AACACCCATAAATATATCTATTTCGTTTATTCTAACACCATTGGTATTCC
ATGAGCCCGGAACTTTTTATTGGACTGACCTTCGATGACCTTCTCTAAAA
TATAAGTTTAATATTCGTTTAATTTTTTACAGTTTACACGGGTAGCCAAC
TCGGTTATAATGCGGACCAAATGGGAACATTGCAAGGTTggtgtttcaga
aaaaaactcttAATGACAAGGTTGCCAAGGTTACCCCTCGAATAATCATC
AGTTCCGAagtttttaaaagttcaacTCGTTCaacaaagtaaattttttg
agtGATCGCAAAGATGAATAATTATGTAATGCAATAAAACCTATAAAAGG
cagacactcaattagcggaccctctgattggTGGACCCTCGGACAAATTC
TTTTGCACGAAATTGCAAAAACCCCTATTTTCGCTCTCCAATTAGCGAGA
ATCGAATATCAAACTGGTCAcagattttttctttgaagCACGTATTAGTT
TTATTATCCAAAttagttttaaaagttttaagtttTCTCTTGACCCATTC
GACGAATTTAGCCGGGCCAACGAAATCATAAACGCTTGCACTTCAACCCC
CAGCCATCAGCTAGATTCAACCTTTTCCCAGTAGCTCGAGCTCTGGTTCC
GGTATTCTGTTCGAATGATTgctacaatatttttttttcaactatGTTAT
CTGGTTCATGTTTGCAAACTAGTGATTTCCCCTATGAACGGAGTCCAAAT
CTGACGATCCCTTTCTACCTTTCTTGTAAGTACGGTACCCTCTGACTTTC
AAGTTAATCTTGTTCAACTTCTATTTTTGTGTTATATTATATTTCTATAG
ACATTCTTTAAATCGTGAAAATTAAATTGTTGCGTCTCAAtaacctttct
cttgttcttctatgTCCTAGTGTCCTGCACAAGTTCTAAAGACTCCCtta
caccctgggatggcctaatttcaaaattggagctcttagatgaaaaagtt
ctaaaatttgGACGCTTCTAGTTAGCGGACGTTTCTCCGGTGGTatccgc
taattagaggctcCATCGGTGTCAAGTCAATGTAGAAGAGGGGTTAGAAA
ACGATTTTTCTAATCTTCTggagaaaaaaagacaaatgaatCAATTTTAC
TTGAACAGGAAAAAAGAGATGTgagagaaaaaagttttttatttgagggT
TGATCGTGGTTGTGGTCATCTTTCGACCGCATGTTTTACGGTTTTTTGTG
TTCGAAGGGTTTTAAAAACGTTGACAGAAAATGAGATAAAAAGAGCGaag
tagaaaaaagaaaaaagaatggaGAAAAGGAATCATCAAGCAGAATGGAA
ATTGGAAAATATGTGGAAAGTTTTTCTGTTaagaaaatagataaaaattg
TTGTTGATGTTagtttataaaacaaaaaaaatcatgaagATTTTCCTTTC
GAACTAATTAGAATGTCATTCTTTAGAAACGCCTTTCGAGAAGTATCTTT
GATTTTCACAGCTCAAAGTTTTCTTTTGACTTTTAGGAAGTCACAGTCTT
TTTGTCTTCTGTTTTTGCAGTTAACTTCTTTTTTGGTGATATTTCTACTG
TATGATCTCTAATATCTTGGGGAGCAACATGCTGCTATTTAAAATGATTA
CTATCCCTTCCTAAACAAAATAGTTATTGATTGGAAACACATCAAATCGA
AATCCAATTTCAGTATATAGATTCCTAGCTGGTAAACATTTCAAACGTTG
TATATGGGCgtattttgttgttattttaTGGGCGTATGGGGGTGGGGTAa
ggggatgtgccgctggtccAGGTAACTTAGGAAGTgttcataaagtatct
actagaagggggtggaggatttttccaaaaatcggaaaaaaaattcgcAC
CCCTATGTTCAAAGATTTTTCGAACCTCCCCCTTAACCAAGCCAAAAact
tttcccccccccccccttaaccaagccaaaaacttttccccccccccccc
ttaaccaagccaaaaacttttcccccccccccccttaaccAAGCCAATAA
CTTTTCTCACCCCCTCCCCTccctaagaaaattttttaataaataccCCC
CTCTCGTGCAATCCTTGCCTTGTTCATAAGTTAGATGAAAGTTGCTGAAA
TGTGAAATTGGATTTCAAACATCGCTTCCGGAACTTTACAATCTCATTTA
TATCCTTTAATTTTTGTCTGttctttttgggaaattttatCGTAGCGAGT
GTTATAACTGAGGCGCAACCGTTTTGCGccgacaaagaaaattttaaaat
tttaacccTCTCATTTAGCTAGGTGACCCTAGGTGCTTCCTGTTAGTGCG
AGAGTTATTGAAAACAAGACTAAGATTTCAAGCTATATTActtaaaaatt
gagatttttgcaGCATGCAAAGACCATATATGCAAAGACAAATAATAGAT
TATGATTGGtgtaaagttttaaagaaaagttttcaaaaaaggcTCTGATA
AATGGTTGAAAAACACTTGATTTTTGAATCAACCTGGTGGGATGTCAAAa
caatttccccccccccccctaaagaTAAGATGgcaaaaaattatctttca
cCGTACCTTTTTTTTCTGGCACTTTACTAATGATTTTTTTAGCACGGGTG
AAAAGAAATCAGCAACGTGTATTTGACAGACCTCCCTGTTGAACTGGTTG
TGTTTAATCATTCTTTTCTGTGATTTTCCCTTTCAACCTGGAAAAGGGTG
ATGATATGGCTCTAAACGAACCTTTTCAATATTTGGCCACTTTCAGGAAA
TTCTAATTCAAAAGCTGATATCGatagcaaaaataagaaaaaagcgaaaa
tgaaaagttgaaagaaaaataaaatcgaaCTGGAAGAGAAATATAGAATT
TcatctttttgtactttttttttGTACTTTCTTTTCTTCTGAAGGGAATA
TATTTCCCTATATATATCGTACTTTTCTCTAGCAAtgggatttgaaaata
atataacttttttgggacttttcttttttctttttccaatttCAGCCGTT
TTTTCTTTCGATTTACACCTTCCATCGAAttacttttttcttgaaaaccG
TTTGTTTGGGGAAGAAATTGGTTAATGAAAAAAGCCCCCACTCGACAAAG
AAACGTGAGGAAAAAACACTTTAATAGGATTGATATAGCGAAAAGaagtt
ttaaataaataaacataaatTTGATAACAAGAAAGCCTGTTTCTAATAAG
CAGATGGCAGcattaaaaacaaacattttatcCAACTTTGGATACTGTTT
CTACAATCGCCTTTCCTTACATCTTTATGTGCCTGCTATATCTTATGTAA
AGACGTGAGGAAAGTTTGAGAGAGAAAATGAACGAGAGCTTGTTGAAAGG
TGAATGAAGGGTAATCCCTCTTTTGGCCTTCTTTCTTATTTACTCCTTCT
CCTAGTTGAAACTTGACTCGAATTGTTATCAAATCAAACATGGAAGGATC
ATTTCATAGTTTCACTTCATTAAATCatcttttttcattcttttatttcg
tttttcttcctttttaaaaatattgttcctcgaacaaaaacttttcattt
acGATTTGATGAAGGACAAAATAAGTTTATTCACCCTCTACCCGAACaag
aacaaatttctagttGACTGTGTTTTCAACCTGATGTTCTTTTCACTTAA
CACCCTATGCTAGATATTTCCCCATTATGCAAACTATCCCTATTTATTCA
TTCTAAGTACTAATGAACTTTGTCTTTTTTCGAGCcttgatgtttttttt
cctCTTCAATTTTGAGATGATTTTTTGCGTTCAAATTAGAAGGAAGatat
ttgagcaaattttattattttaacacGGGAAATTAGAATAGAATGGTTGC
TGACTTTTAAGGTGAAGATTAGATGACCTTTTACAAGTTTGATCAGGTTT
ATCAAATATTTAGGTGCTTTGTAAGGGTCAAAGGTTGGCAAATCTGTCGA
TTATGTTTGGATTCAAAAGAATTCGTGTGTCCTTCTTTAAAATCTATGTT
GAGAGAAAAGACTTCACGACCTTGAGCTCAAACCATATTGGCCTGTTCTT
AGACGATTTTAAGCATTCAGTTTGAGTAGTTGACACATCGTACATTATTT
CGGTTCCTTTCTACCTTTCTTGCGTTTGTTTGATCTACATTCGAAATAAC
ATTCtaagttttgtatttttcttcatCGTTCAGGTCAACCACCTTGGTCA
CCGGTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAGAACGACT
AAGTGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAATACTATG
ATGGATATCCTCAAGAGAACCACAAGAATCATAATtacattgaaacaaat
gaaTCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCTGTGGAAT
GATTTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGATACGTTAC
TTGGTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAgagatttt
tattattttgataagAACAGACAAGCTTTTGAAGCCATTCTGTATTATTA
CCAAACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATGCCGTTGT
TCGCAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTTTATGCAG
TTACAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCTTACCGAC
GAACGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCTGATTCTA
GTCAAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTATCATCTTA
TCCATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAGTGAACAA
CAACAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACAAACGGTA
CGCTCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCGTCAACCA
TGGTTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTGAATATCT
GGTGCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAATCCTTTC
TTAACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCACCCTATCC
ATCAATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGGTCCGGTT
GGTTCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTTGGCTTGC
GTATCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGGCATGTTG
ATATTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCATATTCTA
TGCGGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGATGCGTTTT
GGTACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAAAGTTCCC
AAAACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCGTTGGCGT
GTTGACAATTGCATTGCCAGTACCGGTTATTGTGTccaattttgagtttt
tttacaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAACACACCG
TCGGAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTCAAAGCAA
TCATAAAGAGAACAACATCAATCATAATCACAACGAAGATCCTCTCTTGA
CAACTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGCTACATGG
TGATTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAACCATATG
GTGATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTTTCACTGA
AATAGAGatcattaaaattgatgatttaGACAGATGCTGATCGCCAAGTT
TTAActtttaattgtttttcttaATGAAAGTCAATGCTGTTAGGTCTTAG
CGAATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAACAGGAGA
AAAGTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCATCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018564-exon-sc0000301-1491911889:344673..344762 | TCONS_00018564-exon-sc0000301-1491911889:344673..344762 | Clytia hemisphaerica | exon |
| TCONS_00018564-exon-sc0000301-1510915933:344673..344762 | TCONS_00018564-exon-sc0000301-1510915933:344673..344762 | Clytia hemisphaerica | exon |
| TCONS_00018564-exon-sc0000301-1575043694:344673..344762 | TCONS_00018564-exon-sc0000301-1575043694:344673..344762 | Clytia hemisphaerica | exon |
| TCONS_00018564-exon-sc0000301-1491911889:349106..350921 | TCONS_00018564-exon-sc0000301-1491911889:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018564-exon-sc0000301-1510915933:349106..350921 | TCONS_00018564-exon-sc0000301-1510915933:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018564-exon-sc0000301-1575043694:349106..350921 | TCONS_00018564-exon-sc0000301-1575043694:349106..350921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:344673..350921 + |
Blast
BLAST of TCONS_00018564 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 399.823 bits (1026), Expect = 1.691e-131 Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 3
Query: 210 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1490
G+PQ+ + E E ++ IN+ G+ +ET TL +FP+TLLGD + Y+ R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE +++EGYI ++ER LP NE QR+VW LFE+P+SS ARI+A SV+VI++SI FCLETLP + N + +N T+ S S + P+F E CIIWFSFE+LVR + PSK F + +N ID++AI+PYFITL + L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+ E+++Y + SPD
Sbjct: 17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443
The following BLAST results are available for this feature:
|
