TCONS_00018476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018476
Unique NameTCONS_00018476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018476 ID=TCONS_00018476|Name=TCONS_00018476|organism=Clytia hemisphaerica|type=transcript|length=2398bp
AAAAAGAATaagattaaaacaaaaataatgagACATTGGATCATTtgtca
tttttatgaaattcttttttgatgaaatttaaaaaaaaaaatatcaacta
aATCACTAAAAACTTCAGATAatcgattttaaaaatttttatcgtgcctt
ttgataattttcaaggAGTTTCACAGGTTCATTTTCACTATCATCAAAGA
CCCTTAAacattgaaaaatgtttttttgaaaaattatttttgaaacaacT
TGCTCTACTAAAAGCCTGATGAACACTTGTAAATTGACGCTCCAAATGAT
ACTAAAGGGTGAATTTTTGCAGGGATTAAATTTTTTGGCAGTGTCATCCA
AGAAATTAAgtcaaattaattttaaaatattacctGGCATCggagaagcg
ctaataatgcatATTTCAACAACCAGTAAGTATAAATTGGCagtaaaaag
aaacaaaaccaTGAAAATATGTCTCCTGATAATACCATTTGCTAAATTTA
GTCCccgcaaaatcttaaaattttgcagatgaGCTTGactgcaaaattta
atccccacaaaaatttatcccatttgtAGTATTGAACAATCAACCTGCAA
CCTTGACatccattaaaaaaatttgtccTATTCTTAATCACGATGTCATT
TTGAATTATGAAAAATCTTAAGCATTTTAAACAACAacataccgtaactt
ggtctaatgtcgacaccccttcTCTAATGccaacaccctttttatcagct
gaaatttatagaaaggttgaaactgtttttctttgcttagtggtcagaga
gaaataatcctttttcaatcagtgattcaagcttttaTATTATTCCGGAA
TTAaatgagggatgtcgatattagaccaactcaCGGTACTCAATATCAGT
GCGCACTAAACAATTTCTTATGTCATTATTTTGATGTTAATGATGCTAGA
GTTTTTCATTactcaaaaaaataaatgtagAAATGGGAGGCTGGTATTTC
AAGTGACATGAAAAATAACCATTCGTTCATAACAATGAAATCTGCAGTGC
AGGAAATTTTACAACTGTTATTACCGTCTCAATAACATTGTATATAAAGT
AATGTGACAAGTGTGTTAAGGAGTTATTTTGAGATTaagaaatgtatttt
taaagttttgtctCAGTTTCCATATTTATAAAATCCTTCACCAGATTTTC
GACCAAACTTTCCATCCTCAACAAGTTTATTCAAAGTGTCATTAGgattg
aacaaaatattttcagggaaTTTCGAATGCCATCcatcaatgataaattt
tgttGTGTCAAGACCAACATAATCTGCAAGTTCAAAGGGTCCCATTGGAT
AACCTGCACCAAGTTTCATCGCTGTATCAACATCCTCTGCACTTGCTTCA
CCTCTCTCAACCATTCGCATTGCTTCCATCATGTACGGAACAAGTAGACG
ATTGACAATGAATCCCGGTGTATCACGGCAAACAACTGGTGCTTTACCaa
gatcttttgaaaattgaaagagaGAATCAAAAGTTTCTGAAGAAGTGTGT
TCTGTTTTGATAACCTCCACAAGCTTCATCATAGGGACAGGGTTGAAAAA
GTGTAGTCCACCAAATTGGTCTTTGCGAGAAGTAGCTTCAGAAATTTCAG
TAATTGAAAGTGATGACGTGTTTGATGTAAACAAACAGGTTTTCGGTGCA
ACCGCATCAATCTGTTTGAACAACTTTTGCTTGATTACCATATTCTCAGT
GATAGCTTCAATAACTAAATCAGCATCAGCACAAGCTTCCTCCACAACTc
tgtttgttttaattttgttcaaaatttcctGAACAAACTTGGCAGATCCT
TTTCTCTCATTTGGGAATTTCTTCTTTGTGATGCGATCAAGGGATTTGGT
GATCATCACCATACATTTTTGCAAATATTCATCCTCAGCATCAACAATGG
TAACATTGAAATCATTTTGGGCAGCAACTTGAGCAATGCCTCCGCCCATC
AACCCTCCTCCAATAATGGTGACATTTTTAATCTCGTGTTTTGGAGCTGG
CTGCTCCTCACTGAAATTCTTTGTAGACAAAACAAAGGTTCTTGTTTGAC
TTCGAAATAATGGACTAGCTTGAGTCAATACCTTTTGAAAGCGTCTTAGC
ATCTTGAAAAATAGTCAGCAAGATCTTGAAAACTTTGTTTGTGATTTCTG
TTCGCTTCGCTTTCTACGTTCCGTCCGGTCCGCAATGTGCAAAAGGTTGA
AAACAAGCCGAATATTAAGGGCCTGTACATACCAAAAGAATAAGAGTTGA
TtgttaaaatagctttaaataaTGCAGAAGGGACCAACACCAAAGTTTTC
catccaaaaataattttcaaaaaaaggtttcaagcagaaatgatcaat
Run BLAST on NCBI

protein sequence of TCONS_00018476-protein

>TCONS_00018476-protein ID=TCONS_00018476-protein|Name=TCONS_00018476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MLRRFQKVLTQASPLFRSQTRTFVLSTKNFSEEQPAPKHEIKNVTIIGGG
LMGGGIAQVAAQNDFNVTIVDAEDEYLQKCMVMITKSLDRITKKKFPNER
KGSAKFVQEILNKIKTNRVVEEACADADLVIEAITENMVIKQKLFKQIDA
VAPKTCLFTSNTSSLSITEISEATSRKDQFGGLHFFNPVPMMKLVEVIKT
EHTSSETFDSLFQFSKDLGKAPVVCRDTPGFIVNRLLVPYMMEAMRMVER
GEASAEDVDTAMKLGAGYPMGPFELADYVGLDTTKFIIDGWHSKFPENIL
FNPNDTLNKLVEDGKFGRKSGEGFYKYGN
Run BLAST on NCBI

transcript from alignment at sc0000300:28964..31361

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018476 ID=TCONS_00018476|Name=TCONS_00018476|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at sc0000300:28964..31361 (Clytia hemisphaerica)
attgatcatttctgcttgaaacctttttttgaaaattatttttggatgGA
AAACTTTGGTGTTGGTCCCTTCTGCAttatttaaagctattttaacaATC
AACTCTTATTCTTTTGGTATGTACAGGCCCTTAATATTCGGCTTGTTTTC
AACCTTTTGCACATTGCGGACCGGACGGAACGTAGAAAGCGAAGCGAACA
GAAATCACAAACAAAGTTTTCAAGATCTTGCTGACTATTTTTCAAGATGC
TAAGACGCTTTCAAAAGGTATTGACTCAAGCTAGTCCATTATTTCGAAGT
CAAACAAGAACCTTTGTTTTGTCTACAAAGAATTTCAGTGAGGAGCAGCC
AGCTCCAAAACACGAGATTAAAAATGTCACCATTATTGGAGGAGGGTTGA
TGGGCGGAGGCATTGCTCAAGTTGCTGCCCAAAATGATTTCAATGTTACC
ATTGTTGATGCTGAGGATGAATATTTGCAAAAATGTATGGTGATGATCAC
CAAATCCCTTGATCGCATCACAAAGAAGAAATTCCCAAATGAGAGAAAAG
GATCTGCCAAGTTTGTTCaggaaattttgaacaaaattaaaacaaacagA
GTTGTGGAGGAAGCTTGTGCTGATGCTGATTTAGTTATTGAAGCTATCAC
TGAGAATATGGTAATCAAGCAAAAGTTGTTCAAACAGATTGATGCGGTTG
CACCGAAAACCTGTTTGTTTACATCAAACACGTCATCACTTTCAATTACT
GAAATTTCTGAAGCTACTTCTCGCAAAGACCAATTTGGTGGACTACACTT
TTTCAACCCTGTCCCTATGATGAAGCTTGTGGAGGTTATCAAAACAGAAC
ACACTTCTTCAGAAACTTTTGATTCtctctttcaattttcaaaagatctt
GGTAAAGCACCAGTTGTTTGCCGTGATACACCGGGATTCATTGTCAATCG
TCTACTTGTTCCGTACATGATGGAAGCAATGCGAATGGTTGAGAGAGGTG
AAGCAAGTGCAGAGGATGTTGATACAGCGATGAAACTTGGTGCAGGTTAT
CCAATGGGACCCTTTGAACTTGCAGATTATGTTGGTCTTGACACaacaaa
atttatcattgatgGATGGCATTCGAAAttccctgaaaatattttgttca
atcCTAATGACACTTTGAATAAACTTGTTGAGGATGGAAAGTTTGGTCGA
AAATCTGGTGAAGGATTTTATAAATATGGAAACTGagacaaaactttaaa
aatacatttcttAATCTCAAAATAACTCCTTAACACACTTGTCACATTAC
TTTATATACAATGTTATTGAGACGGTAATAACAGTTGTAAAATTTCCTGC
ACTGCAGATTTCATTGTTATGAACGAATGGTTATTTTTCATGTCACTTGA
AATACCAGCCTCCCATTTctacatttatttttttgagtAATGAAAAACTC
TAGCATCATTAACATCAAAATAATGACATAAGAAATTGTTTAGTGCGCAC
TGATATTGAGTACCGtgagttggtctaatatcgacatccctcattTAATT
CCGGAATAATAtaaaagcttgaatcactgattgaaaaaggattatttctc
tctgaccactaagcaaagaaaaacagtttcaacctttctataaatttcag
ctgataaaaagggtgttggCATTAGAgaaggggtgtcgacattagaccaa
gttacggtatgtTGTTGTTTAAAATGCTTAAGATTTTTCATAATTCAAAA
TGACATCGTGATTAAGAATAggacaaatttttttaatggatGTCAAGGTT
GCAGGTTGATTGTTCAATACTacaaatgggataaatttttgtggggatta
aattttgcagtCAAGCtcatctgcaaaattttaagattttgcggGGACTA
AATTTAGCAAATGGTATTATCAGGAGACATATTTTCAtggttttgtttct
ttttactGCCAATTTATACTTACTGGTTGTTGAAATatgcattattagcg
cttctccGATGCCaggtaatattttaaaattaatttgacTTAATTTCTTG
GATGACACTGCCAAAAAATTTAATCCCTGCAAAAATTCACCCTTTAGTAT
CATTTGGAGCGTCAATTTACAAGTGTTCATCAGGCTTTTAGTAGAGCAAg
ttgtttcaaaaataatttttcaaaaaaacatttttcaatgtTTAAGGGTC
TTTGATGATAGTGAAAATGAACCTGTGAAACTccttgaaaattatcaaaa
ggcacgataaaaatttttaaaatcgatTATCTGAAGTTTTTAGTGATtta
gttgatatttttttttttaaatttcatcaaaaaagaatttcataaaaatg
acaAATGATCCAATGTctcattatttttgttttaatcttATTCTTTTT

Coding sequence (CDS) from alignment at sc0000300:28964..31361

>TCONS_00018476 ID=TCONS_00018476|Name=TCONS_00018476|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000300:28964..31361 (Clytia hemisphaerica)
ATGCTAAGACGCTTTCAAAAGGTATTGACTCAAGCTAGTCCATTATTTCG
AAGTCAAACAAGAACCTTTGTTTTGTCTACAAAGAATTTCAGTGAGGAGC
AGCCAGCTCCAAAACACGAGATTAAAAATGTCACCATTATTGGAGGAGGG
TTGATGGGCGGAGGCATTGCTCAAGTTGCTGCCCAAAATGATTTCAATGT
TACCATTGTTGATGCTGAGGATGAATATTTGCAAAAATGTATGGTGATGA
TCACCAAATCCCTTGATCGCATCACAAAGAAGAAATTCCCAAATGAGAGA
AAAGGATCTGCCAAGTTTGTTCaggaaattttgaacaaaattaaaacaaa
cagAGTTGTGGAGGAAGCTTGTGCTGATGCTGATTTAGTTATTGAAGCTA
TCACTGAGAATATGGTAATCAAGCAAAAGTTGTTCAAACAGATTGATGCG
GTTGCACCGAAAACCTGTTTGTTTACATCAAACACGTCATCACTTTCAAT
TACTGAAATTTCTGAAGCTACTTCTCGCAAAGACCAATTTGGTGGACTAC
ACTTTTTCAACCCTGTCCCTATGATGAAGCTTGTGGAGGTTATCAAAACA
GAACACACTTCTTCAGAAACTTTTGATTCtctctttcaattttcaaaaga
tcttGGTAAAGCACCAGTTGTTTGCCGTGATACACCGGGATTCATTGTCA
ATCGTCTACTTGTTCCGTACATGATGGAAGCAATGCGAATGGTTGAGAGA
GGTGAAGCAAGTGCAGAGGATGTTGATACAGCGATGAAACTTGGTGCAGG
TTATCCAATGGGACCCTTTGAACTTGCAGATTATGTTGGTCTTGACACaa
caaaatttatcattgatgGATGGCATTCGAAAttccctgaaaatattttg
ttcaatcCTAATGACACTTTGAATAAACTTGTTGAGGATGGAAAGTTTGG
TCGAAAATCTGGTGAAGGATTTTATAAATATGGAAACTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010352XLOC_010352Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018476-proteinTCONS_00018476-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018476-exon-sc0000300-1491911889:28964..31361TCONS_00018476-exon-sc0000300-1491911889:28964..31361Clytia hemisphaericaexon
TCONS_00018476-exon-sc0000300-1510915933:28964..31361TCONS_00018476-exon-sc0000300-1510915933:28964..31361Clytia hemisphaericaexon
TCONS_00018476-exon-sc0000300-1575043694:28964..31361TCONS_00018476-exon-sc0000300-1575043694:28964..31361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:28964..31361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
73.9687	73.6656	106.843	112.687	74.9942	55.7815	61.9055	70.5251	69.4025	44.5828	46.7416	55.9248	47.0528	48.8791	43.7463	47.9589	66.4402	60.8615	24.185	27.0562	70.7348	74.8882	55.9993	58.6042	53.7139	83.1337	45.0261	37.5501	39.2763	41.1361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0133286PGD_dom_2
IPR0061083HC_DH_C
IPR0226943-OHacyl-CoA_DH
IPR0061763-OHacyl-CoA_DH_NAD-bd
IPR0061803-OHacyl-CoA_DH_CS
IPR0089276-PGluconate_DH_C-like
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006631fatty acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:00038573-hydroxyacyl-CoA dehydrogenase activity
GO:0070403NAD+ binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity
molecular_function GO:0070403 NAD+ binding
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00018476 vs. Swiss-Prot (Human)
Match: HCDH (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3)

HSP 1 Score: 338.576 bits (867), Expect = 1.415e-108
Identity = 174/287 (60.63%), Postives = 215/287 (74.91%), Query Frame = -1 
Query: 1172 IKNVTXXXXXXXXXXIAQVAAQNDFNVTIVDAEDEYLQKCMVMITKSLDRITKKKFPNERKGSAKFVQEILNKIKTNRVVEEACADADLVIEAITENMVIKQKLFKQIDAVAPKTCLFTSNTSSLSITEISEATSRKDQFGGLHFFNPVPMMKLVEVIKTEHTSSETFDSLFQFSKDLGKAPVVCRDTPGFIVNRLLVPYMMEAMRMVERGEASAEDVDTAMKLGAGYPMGPFELADYVGLDTTKFIIDGWHSKFPENILFNPNDTLNKLVEDGKFGRKSGEGFYKY 2032
            +K+VT+IGGGLMG GIAQVAA     V +VD  ++ L K    I +SL ++ KKKF    K   +FV++ L+ I T+          DLV+EAI EN+ +K +LFK++D  A +  +F SNTSSL IT I+ AT+R+D+F GLHFFNPVP+MKLVEVIKT  TS +TF+SL  FSK LGK PV C+DTPGFIVNRLLVPY+MEA+R+ ERG+AS ED+DTAMKLGAGYPMGPFEL DYVGLDTTKFI+DGWH    EN L  P+ +LNKLV + KFG+K+GEGFYKY
Sbjct:   27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 313
The following BLAST results are available for this feature:
BLAST of TCONS_00018476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HCDH1.415e-10860.63Hydroxyacyl-coenzyme A dehydrogenase, mitochondria... [more]
back to top