TCONS_00018476-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018476-protein
Unique NameTCONS_00018476-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018476-protein ID=TCONS_00018476-protein|Name=TCONS_00018476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MLRRFQKVLTQASPLFRSQTRTFVLSTKNFSEEQPAPKHEIKNVTIIGGG
LMGGGIAQVAAQNDFNVTIVDAEDEYLQKCMVMITKSLDRITKKKFPNER
KGSAKFVQEILNKIKTNRVVEEACADADLVIEAITENMVIKQKLFKQIDA
VAPKTCLFTSNTSSLSITEISEATSRKDQFGGLHFFNPVPMMKLVEVIKT
EHTSSETFDSLFQFSKDLGKAPVVCRDTPGFIVNRLLVPYMMEAMRMVER
GEASAEDVDTAMKLGAGYPMGPFELADYVGLDTTKFIIDGWHSKFPENIL
FNPNDTLNKLVEDGKFGRKSGEGFYKYGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010352XLOC_010352Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018476TCONS_00018476Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0133286PGD_dom_2
IPR0061083HC_DH_C
IPR0226943-OHacyl-CoA_DH
IPR0061763-OHacyl-CoA_DH_NAD-bd
IPR0061803-OHacyl-CoA_DH_CS
IPR0089276-PGluconate_DH_C-like
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006631fatty acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:00038573-hydroxyacyl-CoA dehydrogenase activity
GO:0070403NAD+ binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity
molecular_function GO:0070403 NAD+ binding
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0133286-phosphogluconate dehydrogenase, domain 2GENE3D1.10.1040.10coord: 229..329
e-value: 2.3E-40
score: 137.0
IPR0061083-hydroxyacyl-CoA dehydrogenase, C-terminalPFAMPF007253HCDHcoord: 230..327
e-value: 2.9E-36
score: 123.9
NoneNo IPR availableGENE3D3.40.50.720coord: 3..228
e-value: 3.4E-58
score: 196.5
IPR0226943-hydroxyacyl-CoA dehydrogenasePIRSFPIRSF000105HCDHcoord: 36..329
e-value: 1.9E-101
score: 337.4
IPR0061763-hydroxyacyl-CoA dehydrogenase, NAD bindingPFAMPF027373HCDH_Ncoord: 43..228
e-value: 2.3E-61
score: 206.7
IPR0061803-hydroxyacyl-CoA dehydrogenase, conserved sitePROSITEPS000673HCDHcoord: 227..252
IPR0089276-phosphogluconate dehydrogenase C-terminal domain-likeSUPERFAMILY481796-phosphogluconate dehydrogenase C-terminal domain-likecoord: 229..329
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 39..229

Blast
[Close]
BLAST of TCONS_00018476-protein vs. Swiss-Prot (Human)
Match: HCDH (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3)

HSP 1 Score: 364.385 bits (934), Expect = 1.852e-126
Identity = 174/287 (60.63%), Postives = 215/287 (74.91%), Query Frame = 0 
Query:   41 IKNVTIIGGGLMGGGIAQVAAQNDFNVTIVDAEDEYLQKCMVMITKSLDRITKKKFPNERKGSAKFVQEILNKIKTNRVVEEACADADLVIEAITENMVIKQKLFKQIDAVAPKTCLFTSNTSSLSITEISEATSRKDQFGGLHFFNPVPMMKLVEVIKTEHTSSETFDSLFQFSKDLGKAPVVCRDTPGFIVNRLLVPYMMEAMRMVERGEASAEDVDTAMKLGAGYPMGPFELADYVGLDTTKFIIDGWHSKFPENILFNPNDTLNKLVEDGKFGRKSGEGFYKY 327
            +K+VT+IGGGLMG GIAQVAA     V +VD  ++ L K    I +SL ++ KKKF    K   +FV++ L+ I T+          DLV+EAI EN+ +K +LFK++D  A +  +F SNTSSL IT I+ AT+R+D+F GLHFFNPVP+MKLVEVIKT  TS +TF+SL  FSK LGK PV C+DTPGFIVNRLLVPY+MEA+R+ ERG+AS ED+DTAMKLGAGYPMGPFEL DYVGLDTTKFI+DGWH    EN L  P+ +LNKLV + KFG+K+GEGFYKY
Sbjct:   27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 313
The following BLAST results are available for this feature:
BLAST of TCONS_00018476-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HCDH1.852e-12660.63Hydroxyacyl-coenzyme A dehydrogenase, mitochondria... [more]
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