TCONS_00018474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018474
Unique NameTCONS_00018474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018474 ID=TCONS_00018474|Name=TCONS_00018474|organism=Clytia hemisphaerica|type=transcript|length=1412bp
TATGATTTAGGTAATCACATGTCATGGAAATtacgaaaacaaaaaaacat
ggCTGGTCTCGGCGANTGCTttcaaggttcaggtcccagcaaAAAAAGCT
ACTGTCATTTCTGGTAGTATTATTACTAGTTTTTTTACGTATCAACATGG
GATGTCAATCAACTGAGGAAANTCTCGGCGATGGTACAGATTTTCCTAGG
TTTTTGAGGTATTTTATTCTCTAATTTGTTATTGTCTATTTTTGAACGAT
AACAGAATGACATTATGCTGGGATAAAATcaagaatgaagaaaaaaagat
tgtAACTGATAAAGATGTGGATGAGATCTTTCTTACAGAAAGaGGACTAG
ACAGTCTTCAAGATTTTTCAAGCTACAAATACCTGAAGAGGCTTTATCTC
AACAAAAACAAGATTTTCCATTTGAGTGATGGATTAAAGTCCAACTATGC
GTTAAATGAATTATATCTGCAGAACAACAAACTGATTGACATCACTGGTT
GTTTAAATCACTTAACATGTCTTGAAACACTTCTTCTGCATGCAAATCAA
TTGACAAACTTGTCTGATGTCATTCACGAATTCCGAAATATGAAGAACCT
CAAAATACTAAATCTATTCAACAATCCACTTGCCCAAGAATATGACTATC
GAAGTTTTGTCATTCAAAATATCACATCTCTCAAGTTATTCGACAGGAAA
GATGTGGAGAAAGAACGtgacaaaatatcaaaacaggATAGTCTAGACAA
AAAACAGAACATAGCGTTTGGAACTCGTGTCCCTAAACCAAAAAAGATCA
CTGGGAATGAACTACCGCAAGACAGAACTATTAAAGAATTCAGTGAATAT
GATTACGAGCTGGCTAAACTGGAATCCACGACCACCAAAGAGCagtaagt
ttttttcaattttttgaaagaaacctCATGGTCAAGATATCTATAAAACT
ACTTGTTACTTACATATCTGAAGACTGCAGCgagcaaaaatcgaaaataa
aaaacacgataaaatatcaacaaaatgaaTCTACACCCATACAATTCTGT
TTTATATGAAGTATCTCACTTGTCTTTAAAGcagattttgctttttttgg
aaGATCATTTTGAGTTCGGGATTCATAACGATTACAAAGAGAAACAAACT
TCTCACGTTTTAACACTAATTTCAAAAACTTGGCAATACTTTTTATTGTG
AAGTAAAAATTAACAAGGATGTTGGATCTCGAAACTTTCATCTACAACTT
TCGTCGCGAGCCTTCCTACAGTTTGGTTAAAGCTGCCCCCTTTATCCTGA
TTATTCCTAAAGTTGTCAGGAATAACCTTCTAGGACAGGGTTTAAGGTAT
TTTAGAAATCCTTGCTATTAATTCATCCCAATCCTGATCGACCCTCAGGT
ATAGCATTAGCT
Run BLAST on NCBI

protein sequence of TCONS_00018474-protein

>TCONS_00018474-protein ID=TCONS_00018474-protein|Name=TCONS_00018474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MTLCWDKIKNEEKKIVTDKDVDEIFLTERGLDSLQDFSSYKYLKRLYLNK
NKIFHLSDGLKSNYALNELYLQNNKLIDITGCLNHLTCLETLLLHANQLT
NLSDVIHEFRNMKNLKILNLFNNPLAQEYDYRSFVIQNITSLKLFDRKDV
EKERDKISKQDSLDKKQNIAFGTRVPKPKKITGNELPQDRTIKEFSEYDY
ELAKLESTTTKEQ
Run BLAST on NCBI

transcript from alignment at sc0000300:252260..262940-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018474 ID=TCONS_00018474|Name=TCONS_00018474|organism=Clytia hemisphaerica|type=transcript|length=10681bp|location=Sequence derived from alignment at sc0000300:252260..262940- (Clytia hemisphaerica)
TATGATTTAGGTAATCACATGTCATGGAAATTACGAAAACAAAAAAACAT
GGCTGGTCTCGGCGANTGCTTTCAAGGTTCAGGTCCCAGCAAAAAAAGCT
ACTGTCATTTCTGGTAGTATTATTACTAGTTTTTTTACGTATCAACATGG
GATGTCAATCAACTGAGGAAANTCTCGGCGATGGTACAGATTTTCCTAGG
TTTTTGAGGTATTTTATTCTCTAATTTGTTATTGTCTATTTTTGAACGAT
AACAGAATGACATTATGCTGGGATAAAATCAAGAATGAAGAAAAAAAGAT
TGTAACTGATAAAGATGTGGATGAGATCTTTCTTACAGAAAGGTAACTTG
ACTGTTGTCTACACACTAGCTAGTTAATTTTTTTTTGAATTTACAATTTT
AAGATTAGTACCGTCAACTGCTCTAACTTGGGACGGATAGTCGAAACATG
GGATTGTTGATATATGGACTGTATTTTTACTTACTGTTAAATCACTTTGA
AAATAAATTTGTTTTGATACTTTCATCACCAACCAGTATGGATTTCGTGT
AACTAACGTCGCGGGAAGATCCTCGGCGTACAACTGAAACGTTTTTGGCG
CATTGGCGTAAGGGTACTCACAAAGATTGTTTGATTTTCAGTTGGCGTAA
AGTAATAATTCCAGCTCGGCGTGAATGACTCCTAATCCATTGATTTTTAG
CTTTCATTTGGCTAAATTTTCTTTCGCTCGCTTACGCTCGCTTCAATTTA
TTAATCATGTTGGCGCATGCGCCTCTTTTCCCTTCTTGCACCCTTATTGA
AAAATTGAATGTTGGTACAAAAGAAATTTTTCTTGGCGTGAGGCTTGCTG
TACGGGAAAATATCTTCGGCGCGAGATTTCGTGGAATCCATCTACTGCCA
GACGATCTCAATCAAACAGAATCGACAATCGAACCAGTCGAACCAAATCG
AACGCAATCGACCGATTGAAATATGATTGTCGAGCGCAATCGAATCTCAA
TCGAATATTACCGCAATTTTCAGATTCGATTGATATTCGATTGCATTAAA
GCCAGACGATCTCAATCGAACGGAATTGACGATCGAACCAGTCGAACAAC
AATCGAACCAATCGAATATTACCCAGAATTTTGACGTTCGATTGAGATTC
GATTGCGTTCGACAATCGAATTTCAATCGGGCGATTGCGTTCGATTTGGT
TCGACTGGTTCGAGCGTCGATTCCGTTCGATTGAGATCGTCCGGCTTTAA
TGCAATCGAATATCAATCGAATCTGAAAATTGCGGTAATATTCGATTGAG
ATTCGATTGCGGTCGACAATCGAATTTCAATCGGTCGATTGCGTTCGATT
TGGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAGATCGTCTGGAT
ACTGGATCACCAAGTTTATCAACCACACTTCTTCTGTCATTCATATGTAT
TATTTTCAAATTGTAAAATTGTTTGTTTTTTTTTGTTTTTTTTTTTGTTT
TTTTTTGTTTTTTTTTTAATTATTATGACTGAGGAATTAGCATCATTTTC
TGTTTTTCTTTTCCCCGTGCGGCCGTCCCGTTGCGGGAGGCCAAACCGGG
TTCTCGTCCAACTTCTGATTCTGTATTAGACAGTCTTTTGTGTTTTTTTC
TGTTTTTGTGTGATTTTTTCTATTTTTCTGTGAGATGTTGTTTGCTAAAA
TGTTTGTTTCACGTGTAGTGTATGTGGGATAGTTGGTACAGTGTGTCTTT
TTGCCCTTTTGTACTGTATTTTGTTGTAGTGTCTGTTAATTGTTTGGAAG
CTGCTGGTCGGTTCTGTTATGTTTTCTGAAGGCGACTGAGTGTGGGCCCT
TAAACACGTGGAAAGTCACTATGCCAGTCACAAGTCTGGGACTTTGGGTT
GTGTTTTGTGTTTGTATGTTTTTTTATGTATTTGCTTTTGTATTTGTCCC
CATTTTGTATGTATTTTGATGAACTTGTGTAAATGATTGAACGGAAGTGT
GTTTATCAAAAAAGTTTTTTGCAATTCATTGTTTCTCCACTATTACTTTT
CTTCTATCTTCATTTGGATTAGGTTTTTCTTTCACATACCACTATTTAAA
TTCCCTTTAACTTTTTTCTAAATTACCGCCTTTCCCTTTTTCATTGTGAG
AATGCCACATAAATTATTATTATTATTATTAACGAATATTTATTCAGGAT
GATTACTTTTCAGTTCTAAAAATGTACAATATTTACATAAATATATACAA
TAAAACTGTTTTCCGTTGCAGTCCTGATAAAATATAAAAACCTAAATCAA
AAAATATAATTAATAAATTAGCTAAAATATTGAAAAAATCTAAAAGGCTA
AAGGCACTGGAGAAAAAAGGAAAGAGAAAATTAAACGTAGGGCTAAATGC
AAAGACCAGAAGTAAATCAAATAGTAATAAACTTCGAAGACTACGGGAAA
GTAGTAATGGAGTTAGAAAAAAATTTGATCAGACTACACAGTGCCAGGGT
AAAATAATTAATCTGAACCTAAAAATTCTCTGTTTGATATACCTAAACTA
TTGACAATTTTTGCAGCACCAAAGTAAAAACTTGGCCTCGATGCTTGCAG
TTTGATACTAGGTAGTTGTAATAATTTGTTATTATTCCTTGTACCACGAT
CGTGTTTTATCACTTTAAAATAATTATCAAAAATATCATGTTGGTACATT
TTCTTTACACAATTTTTCACCATTGTGCAAAGTTCTTTCTCCATCAAAGA
TTCAGTCTTTTTAACTGAAGGGATACCAATGATCTTAGCTGCACGATTTT
CAAGAGAAGCAAGCTTTGATTTTTGCCCCTCATTGAAGGTGGTTTTGATC
GAGCAACTATAAGTCAACAGTGGGACAATCATCAGTTCATAAATTGATTG
TGCAGCACTGGCTGTCAAAAATTTTCGAACACCAAATAACAAACGTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCTGCTCAGCGCAGTCTTTTAACATATTCGGCGGGAGTGAATCCATAC
CAGTTGCTTTGTTACGTTTTAATTTGTTTAAATGTTTTAAGATATAGCCA
GGAGTGATGAACGAGAACTTGAAGATACTTCTAGTTCGCAAGGGACGTTT
CCGGCCGTAGCCCCACGTACAGTTTCTGAGTGGAAAGCTAATTGACTTCA
TCTTTTTCACGATTGTAGAAAAGTAGTTTGAAAATTTATTAGCACGGTCA
GTGGGGAATGGTGCCAGATGAAGCAGAGTGTTTGGACTTTGCTGGAAAAA
TTGATTTAATTGTTTTCCAGAACTTTTTCGGGGATACACGGTCATGTTCA
TTCAAGGTATTTCGATAATGAGCCGACTTTGCTCGACGAATAAGATTGAT
GCAGCGATTCTTTTGACGTTTGTATTCTCCCCAGTGAGCGTTTGATTTAG
AGCCTCTTGCTTTACGCTCGAGTTTGTCGCGAATGTTCATCTCTGATTTT
ATATTATCGTTTAACCATTCACATGGTTTTCCTTTGATACGTTTTTCGAC
GAGAGGTGCATGTCGGTCGAAAGTACATTTCAGTTCAGATCATAAATATT
CAGCAGCTTTGTTCGAATCAGAGACGTTACTGTAGATTGGCAACCAGTCG
ATTGATTGAACGTCATTGCGTAGATTAACTGGATTATATGCTCTGTAGTC
TCTGCATTTGATAGTGCGGTAACTGTATTTAAAAGAATTGATCTTACGAC
AACAATAAACGAAATCATGATCACTGAGAGATGTAGCAACAACACATGAA
GTTGTGAATGACGATGGTTTTGTAACAAAAATATGATCGATTAAAGTTGC
TGTGTCTTTTGTGATACGGGTTGGTGTTGAGATAATTTGTTTGAAACCAT
GCAAAGACATAATGTTTTTAAAATCGAAGTGTGAACGAGAGTCATTATCA
TTATCATAATTGACATTGAAATCGCCCATCAAAATAATTTCTTTGTTCTC
TTTTGAAACGAGCTCGATGTTTTCATTTAAACGGTCATTAAAGTCATCAC
AGAGATATTTTGAATCATCAGGCGGTCGATAGAAAAAACCAACAATAAAG
GATTTTGTTTTTTTGACAAAAATTTCGATGTAGATATTTTCTATAGAAGC
ACTATGTAAGTCTTTGCGTTCTTTATAGATGATGATGCCGTTTTTGATGT
AAATTGCGACACCCCCTCCTTTATTTTTCCGATTGAAAATGTGTAGCCTT
CGATTTCAAACTGGCTCATATTACCACTGTCGTTCAAATGGGTCTCTGAT
AAACCAATAATATCTAGCTCCCTATTTAACTCGAGAAAAGTTTGAAAAGA
GTCAAACTTTCTAGGTGACTCTGGGTCCTTAGGGTCAAGGTGTGCTTCCA
AGCCTCTGATATTCTGGTGTCCCATTTTCAATCCTTTTCCTACTAGCCTT
CTCTTGAATTGCTCTCCTGTTAAACTAGCAGTCTTTGATTGAGGTCCAGG
GCAAGTTTCAACATCTCCAGCGATCAAAAGTAGTAAATACAAAGCAAGTT
TTGGTTTCAAACAAATCTCTTTGCCATTTTGAAATAAAAACAAAGTCTCG
TAAACATAAGTAACACCACTCTCTTTAACAATTCCATGAGAGTAATCATA
ACAAACTGAATCACAATCAACAAAAGGTTTCTTGATGTTAAAAGTTATGA
AAATTGATAGCACGAGCATGACCGCTCTCAACGCCGCCATTTTCAAAAGA
CTTTCCGATCTCGTGTTTAGTATCATTAAAGCCAAAAAACCTCAGCGGGA
TCAACTCGAAGAACACAAAACGAAGGCAAAAGAAGATCCAAAGTTCAAAG
GTATCGTCGAACCTTAACCAAAAGACGAAGAAAAATTACAAAAAAGCTTT
TACACAGTAACTTGCAAAACAGAAAGGCAAAAATCAAAGAGGAGTTGCTA
CAAATTGAGAAAAAGCTGCAAAAATCTTTCAAAGACTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
CAGAGATATTTTGAATCATCAGGCGGTCGATAGAAAAAACCAACAATAAA
GGATTTTGTTTTTTTGACAAAAATTTCGATGTAGATATTTTCTATAGAAG
CACTATGTAAGTCTTTGCGTTCTTTATAGATGATGATGCCGTTTTTGATG
TAAATTGCGACACCCCCTCCTTTATTTTTCCGATTGAAAATGTGTAGCCT
TCGATTTCAAACTGGCTCATATTACCACTGTCGTTCAAATGGGTCTCTGA
TAAACCAATAATATCTAGCTCCCTATTTAACTCGAGAAAAGTTTGAAAAG
AGTCAAACTTTCTAGGTGACTCTGGGTCCTTAGGGTCAAGGTGTGCTTCC
AAGCCTCTGATATTCTGGTGTCCCATTTTCAATCCTTTTCCTACTAGCCT
TCTCTTGAATTGCTCTCCTGTTAAACTAGCAGTCTTTGATTGAGGTCCAG
GGCAAGTTTCAACATCTCCAGCGATCAAAAGTAGTAAATACAAAGCAAGT
TTTGGTTTCAAACAAATCTCTTTGCCATTTTGAAATAAAAACAAAGTCTC
GTAAACATAAGTAACACCACTCTCTTTAACAATTCCATGAGAGTAATCAT
AACAAACTGAATCACAATCAACAAAAGGTTTCTTGATGTTAAAAGTTATG
AAAATTGATAGCACGAGCATGACCGCTCTCAACGCCGCCATTTTCAAAAA
GATAATAATTTACGGGGCTCCCCCAGGGGCTGGCGTGACGCGTGAATGAC
CCTTTTTTCTGTCGTGAATACGTGAATTGGACTTTTTCAACGCGTGAATA
CGTGAATTGAGATATCCGCGTGAACGTGAAAATAAGATTTTACCAGCGTG
AATTCGTGAATCGAGATTTTGAGCGTGAACGTGAAAATAAGATTTTACCA
GCGTGAATTCGTGAATCGAGATTTTGAGCGTGAACGTGAAAAGCAAATTA
ATGTCTAAAACAAAACTGAAAAACCTAAATATGTAAAATTTTCTTGCTCG
CTTCGCTCGCATAATCCTTGATATCATATTGACCTATTGCCATTGTAAAG
TTATTCAGAATAATCAAAAATTGAAACAGAAACAAATATTTTTTCCTTAT
TTTTCTAAGGGCGCATTTTGTGATGCAAATATTGCATCCAGCGAAAGTGT
TTTGAGTCAAAACAAAAAAGTCTAAATGAGAAAATTTTCTTCGTCGGCGC
TAATGATGGTCGTCTTTCTGTAATCGCTTATATTGTTACTAAATGCAGTA
TACACAAAAAGATACCGCATGAACTTGGAGACAATGAAGGGTATTTGATT
CTTCGATAATTTACAAAAGTAGGTAGATAGTTCTAAAAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCACTCGCCGTAC
CAGATTTGTACCAGTAAATGGTCAGTGTTGAAAATAATCAAAGATTCTGA
ATGAATTGTTTGACCAAACAAGGCATACTAGGGTAACAATAGTGTGTTAA
GGCCAAAAAATTTTCGCGCTCGCTTCGCTCGCTTTTTCCTTTCCACAGCT
TTTCTTCAATGAGACAGGGTGTCAAACTTTGGAATTTGCGTCCTCTGGTT
GTACCACCTCTTTGAACCTCGCGACTTTCCAGACCATGAATTTGGGCCAA
ACCTCGATTTAAATTTATTCTCAAAATAAAATATATTTAGGACCTGCGAC
GAAGAAATTTCGGGGGGAAACCTTAAAACTAAGGCTTAACTTTGCACTTA
CCTCCCTTAGAAAGCAAATTCAGGCAGGGTTTATACCACCGTACGCCAGA
GAGGTAGTTTTTTGTAACTTTGGCGTAATAGACGGGATAGACAGGCATTA
AACATTGCCCTATGAAAGCTCCAATAGTTGCAGAGGTCTTAAAGGGTCGA
CGATGTCGAGAATAAGGTCAAAAAACTGCAGAAAACTTTATGTTGGCCAT
AAAAAGGTCAAATTTAGCCCAATAAGGTCACAATCGTTTAACAAAAGAAT
TAAAAACAAAATCAGCGCGTGAACGTGAAAATGGTTTTTTTTCGCGCGTG
AATACGTGAATTGGCAAAAGATTTTGCGTGAATACGTGAATTGAGGGTCG
CCTGGGGGGGCCTCATTTACCATCAATCATCTTTTACAGTTCTATATATT
CTGAGGCCCTACGCATTGCTAGATGCACTCTACTTTTTGAAGATGTTCTG
CCCAGAATTTTAGAACTTTTCAAACGCATGCTCAATCAGGGAGCTGAAAG
ATCTTTCTTGCGAAAACAAATTGTAAAGTGTTTTAATAGATTTCCAGAGA
CTTTTATGAAATTTGGAGAATCTTTAAATGATTTTTTAGCGCAACTGCAT
TTTTGAAAAATTGAAACATTTTTATATGATTTATTGTATGTTAGTTTTCT
CAGTCATATAGCATTAAAATAAAAGTGGCAAAGATTCTTGCCCTGGGATC
AAGAAACTCGTCCCGATCGTCCCCGAAACTTTTGAAAATTGAAAATATTG
GTATGGATATAGATATTGGGTACTTTTTTCCAAAAATTTGGGTTTGTATA
TTTTATAATCCTTGTGTAGAAATACTTAAATGAATAAATGACAAATCATT
CGATCCTAATCTTATCAATCTTAATCTCATCAATCTACAAGAAACAAACA
ATATTTTGTTATACACTTTGTTTACTTTTAGAGGACTAGACAGTCTTCAA
GATTTTTCAAGCTACAAATACCTGAAGAGGCTTTATCTCAACAAAAACAA
GGTAATCGTCAGCAATATTGCTTTATAAATGAAGTACAAAATTTTGAGGC
AGATTTTAGATTATCTTATTTTGAGCATTATCTTTACACACTGTATACGG
GAAATTGTTTAAGTAATACTTTTGATATATGACTGAATGGTATTTATATG
AAATAATTTGAATATAAAAATATTTTGCTAAATAATGGCTATATGTACAT
CTTTCTGTTTAGATTTTCCATTTGAGTGATGGATTAAAGTCCAACTATGC
GTTAAATGAATTATATCTGCAGAACAACAAACTGATTGACATCACTGGTT
GTTTAAATCACTTAACATGTCTTGAAACACTTCTTCTGCATGCAAATCAA
TTGACAAACTTGTCTGATGTCATTCACGAATTCCGAAATATGAAGAACCT
CAAAATACTAAGTAAGGATTACTTTTCTAAATTAAATCATCGGTTATAGT
ACTTCTATCGTGAATTCTCAATAATGACTTTTTACGAAAGAACAAACTAA
ATAAGAGCATAAGGAGGCCTAGAGGCCAAAAATTTAAGAACAAAAATTTT
TTAGACAAAAATACTCACAAAATGGTGAAAATAAGAACACAATACATTTT
AGGTTTAAAACCCGAAAAGTTAAGAAAGTCCTAAGAATTAAAAATGAATG
AAAATTGATTTTACTTAGTTCAAACCAATCAACGTTTGTCTAATTAACCC
TTCAGATCTATTCAACAATCCACTTGCCCAAGAATATGACTATCGAAGTT
TTGTCATTCAAAATATCACATCTCTCAAGTTATTCGACAGGAAAGGTACA
AGATTTTAAAATAATCAAATTCTTAACTATTTTGACACCTTTTTTAGAAA
TCTAGTCTTGATACAACTTAAAGAAGAATCTAAACTGCAATGTGTTTTTA
TAAGATTTTAAATTATATCTCTAACAGTCACGTCCACCATCAGTGAAAAA
GTAAAAGCTTCATGTAAAAAAAAACTTTTTGTTGTAAAAGTCTAAAAGTC
TCACCTTAGAAATAATCGTTTTTATCTTCGTTAAGATGTGGAGAAAGAAC
GTGACAAAATATCAAAACAGGATAGTCTAGACAAAAAACAGAACATAGCG
TTTGGAACTCGTGTCCCTAAACCAAAAAAGATCACTGGGAATGAACTACC
GCAAGACAGAACTATTAAAGGTATGATATGATGTCTTTAATCTTCAATAC
TAAAAAGTTGACGATGGACGCGCGAAATTACAATGGCATTCACTTTGTCT
AATACACTTCCTCTCTAACTCAAATTTATTTTGTACTTTCGAATGGAACC
AGCTTGATTTTACAAGCTTTACCTACTTTAAGACTGTTTTTATCTCCGTC
TACAGAATTCAGTGAATATGATTACGAGCTGGCTAAACTGGAATCCACGA
CCACCAAAGAGCAGTAAGTTTTTTTCAATTTTTTGAAAGAAACCTCATGG
TCAAGATATCTATAAAACTACTTGTTACTTACATATCTGAAGACTGCAGC
GAGCAAAAATCGAAAATAAAAAACACGATAAAATATCAACAAAATGAATC
TACACCCATACAATTCTGTTTTATATGAAGTATCTCACTTGTCTTTAAAG
CAGATTTTGCTTTTTTTGGAAGATCATTTTGAGTTCGGGATTCATAACGA
TTACAAAGAGAAACAAACTTCTCACGTTTTAACACTAATTTCAAAAACTT
GGCAATACTTTTTATTGTGAAGTAAAAATTAACAAGGATGTTGGATCTCG
AAACTTTCATCTACAACTTTCGTCGCGAGCCTTCCTACAGTTTGGTTAAA
GCTGCCCCCTTTATCCTGATTATTCCTAAAGTTGTCAGGAATAACCTTCT
AGGACAGGGTTTAAGGTATTTTAGAAATCCTTGCTATTAATTCATCCCAA
TCCTGATCGACCCTCAGGTATAGCATTAGCT

Coding sequence (CDS) from alignment at sc0000300:252260..262940-

>TCONS_00018474 ID=TCONS_00018474|Name=TCONS_00018474|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at sc0000300:252260..262940- (Clytia hemisphaerica)
AATTCAGTGAATATGATTACGAGCTGGCTAAACTGGAATCCACGACCACC
AAAGAGCAGTAAATGTGGAGAAAGAACGTGACAAAATATCAAAACAGGAT
AGTCTAGACAAAAAACAGAACATAGCGTTTGGAACTCGTGTCCCTAAACC
AAAAAAGATCACTGGGAATGAACTACCGCAAGACAGAACTATTAAAGATC
TATTCAACAATCCACTTGCCCAAGAATATGACTATCGAAGTTTTGTCATT
CAAAATATCACATCTCTCAAGTTATTCGACAGGAAAGATTTTCCATTTGA
GTGATGGATTAAAGTCCAACTATGCGTTAAATGAATTATATCTGCAGAAC
AACAAACTGATTGACATCACTGGTTGTTTAAATCACTTAACATGTCTTGA
AACACTTCTTCTGCATGCAAATCAATTGACAAACTTGTCTGATGTCATTC
ACGAATTCCGAAATATGAAGAACCTCAAAATACTAAAGGACTAGACAGTC
TTCAAGATTTTTCAAGCTACAAATACCTGAAGAGGCTTTATCTCAACAAA
AACAAGATGACATTATGCTGGGATAAAATCAAGAATGAAGAAAAAAAGAT
TGTAACTGATAAAGATGTGGATGAGATCTTTCTTACAGAAAGAATTCAGT
GAATATGATTACGAGCTGGCTAAACTGGAATCCACGACCACCAAAGAGCA
GTAAATGTGGAGAAAGAACGTGACAAAATATCAAAACAGGATAGTCTAGA
CAAAAAACAGAACATAGCGTTTGGAACTCGTGTCCCTAAACCAAAAAAGA
TCACTGGGAATGAACTACCGCAAGACAGAACTATTAAAGATCTATTCAAC
AATCCACTTGCCCAAGAATATGACTATCGAAGTTTTGTCATTCAAAATAT
CACATCTCTCAAGTTATTCGACAGGAAAGATTTTCCATTTGAGTGATGGA
TTAAAGTCCAACTATGCGTTAAATGAATTATATCTGCAGAACAACAAACT
GATTGACATCACTGGTTGTTTAAATCACTTAACATGTCTTGAAACACTTC
TTCTGCATGCAAATCAATTGACAAACTTGTCTGATGTCATTCACGAATTC
CGAAATATGAAGAACCTCAAAATACTAAAGGACTAGACAGTCTTCAAGAT
TTTTCAAGCTACAAATACCTGAAGAGGCTTTATCTCAACAAAAACAAGAT
GACATTATGCTGGGATAAAATCAAGAATGAAGAAAAAAAGATTGTAACTG
ATAAAGATGTGGATGAGATCTTTCTTACAGAAAGAATTCAGTGAATATGA
TTACGAGCTGGCTAAACTGGAATCCACGACCACCAAAGAGCAGTAAATGT
GGAGAAAGAACGTGACAAAATATCAAAACAGGATAGTCTAGACAAAAAAC
AGAACATAGCGTTTGGAACTCGTGTCCCTAAACCAAAAAAGATCACTGGG
AATGAACTACCGCAAGACAGAACTATTAAAGATCTATTCAACAATCCACT
TGCCCAAGAATATGACTATCGAAGTTTTGTCATTCAAAATATCACATCTC
TCAAGTTATTCGACAGGAAAGATTTTCCATTTGAGTGATGGATTAAAGTC
CAACTATGCGTTAAATGAATTATATCTGCAGAACAACAAACTGATTGACA
TCACTGGTTGTTTAAATCACTTAACATGTCTTGAAACACTTCTTCTGCAT
GCAAATCAATTGACAAACTTGTCTGATGTCATTCACGAATTCCGAAATAT
GAAGAACCTCAAAATACTAAAGGACTAGACAGTCTTCAAGATTTTTCAAG
CTACAAATACCTGAAGAGGCTTTATCTCAACAAAAACAAGATGACATTAT
GCTGGGATAAAATCAAGAATGAAGAAAAAAAGATTGTAACTGATAAAGAT
GTGGATGAGATCTTTCTTACAGAAAGAATTCAGTGAATATGATTACGAGC
TGGCTAAACTGGAATCCACGACCACCAAAGAGCAGTAAATGTGGAGAAAG
AACGTGACAAAATATCAAAACAGGATAGTCTAGACAAAAAACAGAACATA
GCGTTTGGAACTCGTGTCCCTAAACCAAAAAAGATCACTGGGAATGAACT
ACCGCAAGACAGAACTATTAAAGATCTATTCAACAATCCACTTGCCCAAG
AATATGACTATCGAAGTTTTGTCATTCAAAATATCACATCTCTCAAGTTA
TTCGACAGGAAAGATTTTCCATTTGAGTGATGGATTAAAGTCCAACTATG
CGTTAAATGAATTATATCTGCAGAACAACAAACTGATTGACATCACTGGT
TGTTTAAATCACTTAACATGTCTTGAAACACTTCTTCTGCATGCAAATCA
ATTGACAAACTTGTCTGATGTCATTCACGAATTCCGAAATATGAAGAACC
TCAAAATACTAAAGGACTAGACAGTCTTCAAGATTTTTCAAGCTACAAAT
ACCTGAAGAGGCTTTATCTCAACAAAAACAAGATGACATTATGCTGGGAT
AAAATCAAGAATGAAGAAAAAAAGATTGTAACTGATAAAGATGTGGATGA
GATCTTTCTTACAGAAAGAATTCAGTGAATATGATTACGAGCTGGCTAAA
CTGGAATCCACGACCACCAAAGAGCAGTAAATGTGGAGAAAGAACGTGAC
AAAATATCAAAACAGGATAGTCTAGACAAAAAACAGAACATAGCGTTTGG
AACTCGTGTCCCTAAACCAAAAAAGATCACTGGGAATGAACTACCGCAAG
ACAGAACTATTAAAGATCTATTCAACAATCCACTTGCCCAAGAATATGAC
TATCGAAGTTTTGTCATTCAAAATATCACATCTCTCAAGTTATTCGACAG
GAAAGATTTTCCATTTGAGTGATGGATTAAAGTCCAACTATGCGTTAAAT
GAATTATATCTGCAGAACAACAAACTGATTGACATCACTGGTTGTTTAAA
TCACTTAACATGTCTTGAAACACTTCTTCTGCATGCAAATCAATTGACAA
ACTTGTCTGATGTCATTCACGAATTCCGAAATATGAAGAACCTCAAAATA
CTAAAGGACTAGACAGTCTTCAAGATTTTTCAAGCTACAAATACCTGAAG
AGGCTTTATCTCAACAAAAACAAGATGACATTATGCTGGGATAAAATCAA
GAATGAAGAAAAAAAGATTGTAACTGATAAAGATGTGGATGAGATCTTTC
TTACAGAAAGAATTCAGTGAATATGATTACGAGCTGGCTAAACTGGAATC
CACGACCACCAAAGAGCAGTAAATGTGGAGAAAGAACGTGACAAAATATC
AAAACAGGATAGTCTAGACAAAAAACAGAACATAGCGTTTGGAACTCGTG
TCCCTAAACCAAAAAAGATCACTGGGAATGAACTACCGCAAGACAGAACT
ATTAAAGATCTATTCAACAATCCACTTGCCCAAGAATATGACTATCGAAG
TTTTGTCATTCAAAATATCACATCTCTCAAGTTATTCGACAGGAAAGATT
TTCCATTTGAGTGATGGATTAAAGTCCAACTATGCGTTAAATGAATTATA
TCTGCAGAACAACAAACTGATTGACATCACTGGTTGTTTAAATCACTTAA
CATGTCTTGAAACACTTCTTCTGCATGCAAATCAATTGACAAACTTGTCT
GATGTCATTCACGAATTCCGAAATATGAAGAACCTCAAAATACTAAAGGA
CTAGACAGTCTTCAAGATTTTTCAAGCTACAAATACCTGAAGAGGCTTTA
TCTCAACAAAAACAAGATGACATTATGCTGGGATAAAATCAAGAATGAAG
AAAAAAAGATTGTAACTGATAAAGATGTGGATGAGATCTTTCTTACAGAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010350XLOC_010350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018474-proteinTCONS_00018474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018474-exon-sc0000300-1575043694:262599..262940TCONS_00018474-exon-sc0000300-1575043694:262599..262940Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1575043694:254190..254259TCONS_00018474-exon-sc0000300-1575043694:254190..254259Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1575043694:253780..253978TCONS_00018474-exon-sc0000300-1575043694:253780..253978Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1575043694:253396..253485TCONS_00018474-exon-sc0000300-1575043694:253396..253485Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1575043694:253021..253155TCONS_00018474-exon-sc0000300-1575043694:253021..253155Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1575043694:252260..252835TCONS_00018474-exon-sc0000300-1575043694:252260..252835Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:262599..262940TCONS_00018474-exon-sc0000300-1510915933:262599..262940Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:254190..254259TCONS_00018474-exon-sc0000300-1510915933:254190..254259Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:253780..253978TCONS_00018474-exon-sc0000300-1510915933:253780..253978Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:253396..253485TCONS_00018474-exon-sc0000300-1510915933:253396..253485Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:253021..253155TCONS_00018474-exon-sc0000300-1510915933:253021..253155Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1510915933:252260..252835TCONS_00018474-exon-sc0000300-1510915933:252260..252835Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:262599..262940TCONS_00018474-exon-sc0000300-1491911889:262599..262940Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:254190..254259TCONS_00018474-exon-sc0000300-1491911889:254190..254259Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:253780..253978TCONS_00018474-exon-sc0000300-1491911889:253780..253978Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:253396..253485TCONS_00018474-exon-sc0000300-1491911889:253396..253485Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:253021..253155TCONS_00018474-exon-sc0000300-1491911889:253021..253155Clytia hemisphaericaexon
TCONS_00018474-exon-sc0000300-1491911889:252260..252835TCONS_00018474-exon-sc0000300-1491911889:252260..252835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:252260..262940 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3571	35.2212	34.4409	31.8047	101.121	70.9054	45.4078	52.1633	34.1709	25.2158	43.4404	46.8956	2.53115	3.0146	2.69611	2.30266	2.36885	4.08448	3.55467	2.65722	9.58058	9.17925	13.1874	10.3112	45.1201	80.9302	18.4291	24.8582	3.82973	4.46884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00018474 vs. Swiss-Prot (Human)
Match: LRC72 (Leucine-rich repeat-containing protein 72 OS=Homo sapiens GN=LRRC72 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.169e-16
Identity = 66/162 (40.74%), Postives = 92/162 (56.79%), Query Frame = 2 
Query:  308 DKDVDEIFLTERGLDSLQDFSSXXXXXXXXXXXXXIFHLSDGLKSNYALNELYLQNNKLIDITGXXXXXXXXXXXXXXANQLTNLSDVIHEFRNMKNLKILNLFNNPLAQEYDYRSFVIQNITSLKLFDRKDV-EKERDK---ISKQDSLDKKQNIAFGTRV 781
            D DV E+FL+++ L  + D S +K LK L+L+ NK+ H    L  NY L ELYL NN + +I G     +    LL H N+LTN+   + E + M NLKIL+L+ NPL Q   YR ++I ++  ++L DR  V EKER     I         Q+IAFG +V
Sbjct:   44 DADVFELFLSKKELTEVIDLSRFKKLKYLWLHHNKL-HGITFLTRNYCLTELYLNNNAIFEIEGLHYLPSLHILLLHH-NELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERRSMITIFNHKKAHIVQSIAFGGKV 203
The following BLAST results are available for this feature:
BLAST of TCONS_00018474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC728.169e-1640.74Leucine-rich repeat-containing protein 72 OS=Homo ... [more]
back to top