TCONS_00018474-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018474-protein
Unique NameTCONS_00018474-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018474-protein ID=TCONS_00018474-protein|Name=TCONS_00018474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MTLCWDKIKNEEKKIVTDKDVDEIFLTERGLDSLQDFSSYKYLKRLYLNK
NKIFHLSDGLKSNYALNELYLQNNKLIDITGCLNHLTCLETLLLHANQLT
NLSDVIHEFRNMKNLKILNLFNNPLAQEYDYRSFVIQNITSLKLFDRKDV
EKERDKISKQDSLDKKQNIAFGTRVPKPKKITGNELPQDRTIKEFSEYDY
ELAKLESTTTKEQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010350XLOC_010350Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018474TCONS_00018474Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 66..159
e-value: 2.2E-12
score: 46.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..186
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 20..211
e-value: 7.3E-23
score: 80.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 15..153
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 42..63
score: 6.287
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 65..87
score: 7.05
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 114..135
score: 5.71
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 88..109
score: 6.734

Blast
[Close]
BLAST of TCONS_00018474-protein vs. Swiss-Prot (Human)
Match: LRC72 (Leucine-rich repeat-containing protein 72 OS=Homo sapiens GN=LRRC72 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.657e-30
Identity = 70/162 (43.21%), Postives = 97/162 (59.88%), Query Frame = 0 
Query:   18 DKDVDEIFLTERGLDSLQDFSSYKYLKRLYLNKNKIFHLSDGLKSNYALNELYLQNNKLIDITGCLNHLTCLETLLLHANQLTNLSDVIHEFRNMKNLKILNLFNNPLAQEYDYRSFVIQNITSLKLFDRKDV-EKERDK---ISKQDSLDKKQNIAFGTRV 175
            D DV E+FL+++ L  + D S +K LK L+L+ NK+ H    L  NY L ELYL NN + +I G L++L  L  LLLH N+LTN+   + E + M NLKIL+L+ NPL Q   YR ++I ++  ++L DR  V EKER     I         Q+IAFG +V
Sbjct:   44 DADVFELFLSKKELTEVIDLSRFKKLKYLWLHHNKL-HGITFLTRNYCLTELYLNNNAIFEIEG-LHYLPSLHILLLHHNELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERRSMITIFNHKKAHIVQSIAFGGKV 203
The following BLAST results are available for this feature:
BLAST of TCONS_00018474-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC726.657e-3043.21Leucine-rich repeat-containing protein 72 OS=Homo ... [more]
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