TCONS_00018459 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018459
Unique Name	TCONS_00018459
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2069

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:35860..41397-

transcript sequence

>TCONS_00018459 ID=TCONS_00018459|Name=TCONS_00018459|organism=Clytia hemisphaerica|type=transcript|length=2069bp
agagaaaaaaaataacaaaaaaatctttgCATGTTGCAGATGGTTAAGCT
GAAGTATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCAC
ATCTCGTTCACTGAGAAATTTGTCTGCGACGTCACAATTTTCATCAGCCA
ATCAGAACTTCGACAGCAGTCATGATTACGTCATTGTAGGAACCGGCTCA
GCTGGATGCGTTCTTTCCAATCGTCTAACTGAAGATGGAGAAAACACGGT
CCTGGCTCTTGAAGCTGGCCCTAAAGACCCTTGGTGGCAATGGAAGATTC
ACATGCCGGCAGCGATGACGTACAACTTATGCAACGATAACTACAATTGG
TATTATCACACTGCTCCTCAGAAAGGCTTGAATAATCGAGTGTTGTATTG
GCCACGTGGTCGTGTATGGGGCGGCTCGTCGGGCCTCAACGCCATGGTGT
ACGTTCGCGGGCACGCCCATGATTATGATCGATGGCAGTCGGAAGGAGCG
GAAGGGTGGTCTTATGCTGATTGTCTCCCTTATTTCAGAAAATCGCAGAC
ACATCAAGAAGGAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACG
TGTCACGTGGTACAATGAGCAACCCTCTTCACCAGGCCTTTTTGAAAGCA
GGTCAACAAGCTGGATATCAATATGTCGATGATCTGAACGGCTTCCAACA
AGAAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGGA
GTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTACC
GCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAGC
AGTGGGTGTGGAATACATgcacaaaaataaaatcaaacgcgcaaaagcaa
ataaagaagtcatccTATCAGGTGGCTCGATCAACACACCACAGTTGTTG
ATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCATGGAATCCC
CCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATCTTG
AAGTCTACGTCCAGCAGAGATGCACGCAACCAGTGACATTATACAAGCAG
ACACGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGCG
CACAGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGAA
GTAGAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTTC
GCCGTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGTT
CCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAATTGAAAT
CGAGTGACCCACGTGATCATCCAATTCTCGACCCAAACTACCTGGACACC
CCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATTATCACGTGAAAT
CATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATGTTACCAG
GGTCTCATGTTCAATCAGACGAAGAAATTGATGCTTTCATTCGCGAACAT
GGAGATTCTGCATATCATCCTTCATGCACTTGCAAAATGGGAGCCTCTGA
TGACCCCTTGGCTGTCACTGATTCCCAGACTCGTGTGCACGGCCTTCAAA
ACCTACGGATCGTTGACGCATCTATCATGCCATCCGTTGTCAGTGGCAAC
TTAAACGGCCCTGTCATCATGATGGCGGAAAAAGCTGCGGATATCATCCG
TGGTCGTGATCCGCTTCCCAAATCAACAGCACCCGTCTACGAAACTCCTG
CTACTGGCCAACGATAATGTGATAGGTTTCCTGCAAAAGATTTAGTATCT
CCTTCGTAGCATGTGTGCAAGGAGCACTATCTTTCCAAAGATGGATACAA
CATTAAGAATTTAGACGGTcatctttttagttttttttttaaatttaaat
taaatgaatttttttaagattaaatTTTAATATATTAAATTGTTAATATT
AAAATAATAATGGAGATTTTTAATTGATTACAATGAAAGAAAGAGAAagt
atatttttacaaaaaaatg

Run BLAST on NCBI

transcript from alignment at sc0000300:35860..41397-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018459 ID=TCONS_00018459|Name=TCONS_00018459|organism=Clytia hemisphaerica|type=transcript|length=5538bp|location=Sequence derived from alignment at sc0000300:35860..41397- (Clytia hemisphaerica)
AGAGAAAAAAAATAACAAAAAAATCTTTGCATGTTGCAGATGGTTAAGCT
GAAGTATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCAC
ATCTCGTTCACTGAGAAATTGTGAGTCGAATTTGTGCACATCTAGTTCAC
TGAGAAATTGTGAGTCGAATTTGTGAAATCTCTGAACATTTCATCATATA
TGATTTCATCCAGCGCAGATGGTTGGTTTCTTGAAATTTCGAAATGGAGA
ATTATTTCCAGCCAGAACTTTCAATGTATGTTATATTTATATAATCCGAG
AGTTGATCCCTTTTCTTTTATGATTTCTAACATGTTATTAAAATGTTTTC
AGTGTCTGCGACGTCACAATTTTCATCAGCCAATCAGAACTTCGACAGCA
GTCATGATTACGTCATTGTAGGAACCGGCTCAGCTGGATGCGTTCTTTCC
AATCGTCTAACTGAAGATGGAGAAAACACGGTCCTGGCTCTTGAAGCTGG
CCCTAAAGACCCTTGGTGGCAATGGAAGATTCACATGCCGGCAGCGATGA
CGTACAACTTATGCAACGATAACTACAATTGGTATTATCACACTGCTCCT
CAGAAAGGCTTGAATAATCGGTGAGCATAACCTCGTTTGTTTGGATTTGT
CTCTGGAAATTAGCGAACTAGGTTTGTACTACCCATTGGTTCCCATCACA
CTTTTATTGTAGGTATACAGTGAACTCTCTCTCTCTCTCTCTTATTCGAA
GTTCTATTATTCGAATCTTTCTGTAATACGAACTAAAATACTGGTCCCCT
TAGCTGAAAAGTCATATAAAATATTATCATAATAATATTGTAATTCGNAA
AATACTGGTCCCCTTAGCTGAAAAGTCATATAAAATATTATTATAATAAT
ATTGTAATTCGAATCTTTCTGATAAAGTTTTCCTTTCATGATTATTTTCA
AATCGTTTAGAGTGTTGTATTGGCCACGTGGTCGTGTATGGGGCGGCTCG
TCGGGCCTCAACGCCATGGTGTACGTTCGCGGGCACGCCCATGATTATGA
TCGATGGCAGTCGGAAGGAGCGGAAGGGTGGTCTTATGCTGATTGTCTCC
CTTATTTCAGAAAATCGCAGACACATCAAGAAGGTGAGCATCTTGCAGCA
AGAATGAGATAGGAGCTAAATACTAATAAGGATTACAGGGTAACTGGAGG
GTTCTTTTTTCTTTTCACTTGGTTTTCGAAACCGGGTGTGAAATCTTTTG
GTACACAATATTGACTAAGAAAACGCAAAAGATGCTCTTGAAAACTTTGT
AAAAGTATCCTCTTTGATCCTTTTACAGGAGGAGACGACTACCGTGGTGG
TGAGGGTCCCCTTCACGTGTCACGTGGTACAATGAGCAACCCTCTTCACC
AGGCCTTTTTGGAAGCAGGTCAACAAGCTGGATATCAATATGTCGATGAT
CTGAACGGCTTCCAACAAGAAGGTATCCTTTTCAAATATTCACTTAAGTA
CTAAACCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACCA
CTTCAGATTTCTGTAAAACTTGCACTTTTTGTGGTGTTTTTGCGAATTAA
AATATCGACATATTCCCAGCATTTTTTGCATCTATGATACTACCATTGCA
AAACTAGATGTCTATCAATACCCATTCCAGATAAAATTGCTCTTATTGCT
TCTGGTTTGAACCTAAAGATTTTGTTTAGCTTAAAAATCATTATTTTCAT
TTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTG
GAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTA
CCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAA
GCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAAAGC
AAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAATTC
CACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTTAAT
AATGGTCCAAGCCTCTACTTTACAGACAGCGGTTCGATTCAGTGGATTAG
TACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACATTT
TTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGTTGA
TGTTGTCGGGTGTGGGCGACGAGAANTATCCTCTTTAATCCTTTTATAGG
AGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCACGTGGTA
CAATGAGCAACCCTCTTCACCAGGCCTTTTTGAAAGCAGGTCAACAAGCT
GGATATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAGGTATCCT
TTTCAAATATCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTC
ACCACTTCAGATTTCTGTAAAACTTGCACTTTTTGTGATGTTTTTGCGAA
TTAAAACATCAACATATTCCCAGCATTTTTTGCGTTATACATCTATGATA
CAACCATTGCAAAACTAGATGCCAATCCATACCCATTCCAGATAAAAATC
AGTGGCCCTTATTGCTTTTGGTTTGAACCTAAAGATTTTCTTTAGCGACA
ACCATTATTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGA
AAACGTTGGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAA
GAACCTTACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAG
GTGACAAAGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGC
GCAAAAGCAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTA
TGAAATTCCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTG
CTTTTAATAATGGTCCAAGCCTCTACTTTACAGACAGCAGTTCGATTCAG
TGGATTAGTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATT
TAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACA
GTTGTTGATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCATG
GAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGAC
CATCTTGAAGTCTACGTCCAGCAGGTAGATAGTTTGTTCTCTCAAGTGTT
TTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTNACCGCCA
TATTTAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACAC
CACAGTTGTTGATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGAG
CATGGAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCA
AGACCATCTTGAAGTCTACGTCCAACAGGTAGATTGTTTGTTCTCTCAAG
TGTTTTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTGTTG
CCTTCATTATCTTGGTCTCCAGGGTTTGTTGTTGTACTAGTGACGAATGT
TGCCGAAGTGTTGGTCTTTGTTGACGATGCTGCTGATCGGGAACATAATG
TGTTATGTGATCTTTTTCTGCACTTCTCCAAACCTGAACCAAGACTGTTC
CATCCTCTTGGATTTGTTTTCTTCATATTCCTTTCGTTTCGTATTATCGG
ATAAGGTGAACACACATCGAATACGTTTTCAACAATATGAAATGATGTTC
GATTAGACGTTTCTTCTTTTCTAAATGTGTGTCAAATTAAATTAAATTTA
GTTTATGAATTGTTCTATCGAGCAGTAGTGCTTTTTTGCTGTGGTTATTT
CAATAAGATTGCTGTTTTAATTAAAAAGGAAAATTTCATAATATCACAAG
TAAAGGAAGAAAGCGAAAATAACTGCGGGTACCTGATTCGAATCTCATTT
CAGGCGAATGATAATGTTTGGAAGGAAGTATTCATTTGCCAAAATGAATT
TTTCTGTTTTTATTTCAGAGATGCACGCAACCAGTGACATTATACAAGCA
GACACGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGC
GCACAGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGA
AGTAGAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTT
CGCCGTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGG
TAAGCACGACATCGTTTTCAAAGTTTACCATTTGATTGCTTGCATTTTGC
ATTTAAAACCAAATTTCAAAACCCTTCACATTGCTGACAGTAAGCATTTT
TCTAAAACAGGTAAATTCGAAAAAACAGCACGATGAAAAGCCCAATTCCA
GCCTCGTTTGCAATTTTGTCCGGAATATACATTTTAAGACCCGGGTTTCC
ATAATCAGCATAAAATTTCCGTTCCAACGGTGTATAACAACCCTATTCAC
CTTCTAGGTTAAGCAAAGATGTCTATAACTCGAGATAATGAAAAATGTTA
TTCTCTGCTTCTATGCAAACTTCTATGCTCATGACCTTCTTCTTGTTTTG
TTTCTTCAGTTCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACATT
GAAATTGAAATCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAACT
ACCTGGACACCCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATTA
TCACGTGAAATCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGA
AATGTTACCAGGTGAGTGTTGTTTTGGTGTGTAAATTGTTCGTGTTTTCA
CACTTTGATTCTAACAGCTTTGGATGGTAAGCTCGTGACCGTTTGTACTT
TTGAAATTTGCTTTTTCAGGGTCTCATGTTCAATCAGACGAAGAAATTGA
TGCTTTCATTCGCGAACATGGAGATTCTGCATATCATCCTTCATGCACTT
GCAAAATGGGAGCCTCTGATGACCCCTTGGCTGTCACTGATTCCCAGACT
CGTGTGCACGGCCTTCAAAACCTACGGATCGTTGACGCATCTATCATGCC
ATCCGTTGTCAGTGGCAACTTAAACGGCCCTGTCATCATGATGGCGGAAA
AAGCTGCGGATATCATCCGTGGTCGTGATCCGCTTCCCAAATCAACAGCA
CCCGTCTACGAAACTCCTGCTACTGGCCAACGATAATGTGATAGGTTTCC
TGCAAAAGATTTAGTATCTCCTTCGTAGCATGTGTGCAAGGAGCACTATC
TTTCCAAAGATGGATACAACATTAAGAATTTAGACGGTCATCTTTTTAGT
TTTTTTTTTAAATTTAAATTAAATGAATTTTTTTAAGATTAAATTTTAAT
ATATTAAATTGTTAATATTAAAATAATAATGGAGATTTTTAATTGATTAC
AATGAAAGAAAGAGAAAGTATATTTTTACAAAAAAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010344	XLOC_010344	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:35860..41397 -

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00018459 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 351/565 (62.12%), Postives = 423/565 (74.87%), Query Frame = 3

Query:  114 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLKAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 1793
            ++L A +  S+ +++ D  + YV+VG GSAGCVL+ RLTED    VL LEAGPKD         WKIHMPAA+  NLC+D YNW YHT  Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G   YRG +GPL VSRG  ++PLH AFL+A QQAGY   +D+NGFQQEG G  D TIH GKRWSA+ AYLHP L R NL A+   +  +V+FEG +AVGVEY+   +  RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+   +      IG +W    TG+ AT  LETGGFIRS+ GVPHPDIQ HFLP  V DHGRV     AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T  DI D R  VKL+REI +Q+A  PFRG E+ PGSH+QSD+EIDAF+R   DSAYHPSCTCKMG   DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+  L     PVY+
Sbjct:   23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586

The following BLAST results are available for this feature:

BLAST of TCONS_00018459 vs. Swiss-Prot (Human)

BLAST of TCONS_00018459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHDH	0.000e+0	62.12	Choline dehydrogenase, mitochondrial OS=Homo sapie...	[more]

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TCONS_00018459 (transcript) - C. hemisphaerica