TCONS_00018431 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018431
Unique Name	TCONS_00018431
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1004

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:281423..285469+

transcript sequence

>TCONS_00018431 ID=TCONS_00018431|Name=TCONS_00018431|organism=Clytia hemisphaerica|type=transcript|length=1004bp
CAAGTCCAGAACGTTCTAATCAACATTACAAGggTTTGAAAGATCATATA
AATGGAATGGAAAAGTCAATGAAGGTCATGCGTTCAAACCTTCATGAAAA
AGAAATGGATAAACAAAGAGTCGTCAGTCAACTTCAAGAAAAACTAAAGA
ACTATCAAAGCTTGCTGAATCAAAAAGATGAGGAGaaTTCAGAAAAGTCA
GAGTCGTTGGAATCCATGAAAGAAACTATagcaaaatcaaatcaagagCG
CCTCCAATTTCAACTCCAATCCTCTCAAGAAAAAGATTCGCAAATGATTG
AGTTGAATGTAAAAGTGAAGCAACAGCAGTTCGAAATCGAgaaattgaaa
tatttattggaagaaaaagacaaagaagTGCTCTATTTTGGGAATAAGAA
TCTCCAATTAGAAGAGGAATCGACAAGGGAACGTAATGAGCAACTCCAAT
CTCTCGAACTTTTGAAGCAAGATGTCAAAGAGAAAGTCGCCCGTCTTCAA
GCTGCATTGGATGGGTCACAGAAAAGCTATCAGTCTTTACAAGGCAGATT
CAATCAGATGATGGATGAGAAAGATAAAACAATCGAAAGTGTAACTGGTG
CTTTAAAATTTAAAGATGCCCTGATTAAGGAGCTGTTGGCAACACCATCT
GGCTTGAATGAAGATCAAGAAGCTATCACCAAAAAGCTTCAAAGCTCGTT
CCAAATGCTTCAAAAACGATCCGAGGATCAAGAATTGAAGTATTTAGATC
AAATGCAAAACAAAGATAATGACATTCTGGATTTGACCAATCAAATACAA
CAAGCAACTCTTACCACCCAAAAATCACAAGCTTTCGTTTATAATCTGCA
ATCTAAAATCAAGGGCTTGAACGCAAACGCTGACgaagataatgaaattt
tagACAAATTGAGGAACTCGTTGAAGAATGCAATCGATAAAGAGCGAGCT
TCAAGACAAGATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatc
aaaa

Run BLAST on NCBI

transcript from alignment at sc0000300:281423..285469+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018431 ID=TCONS_00018431|Name=TCONS_00018431|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at sc0000300:281423..285469+ (Clytia hemisphaerica)
CAAGTCCAGAACGTTCTAATCAACATTACAAGGTAGACTATGTACCGTAT
TATATTTTCACATTTTCTACACGTTCATCTCTCACTTTATCTTATTTTTG
GTTGTGTGGCAAAATTTTGATGGAAGTTCATTTTGTAGCATATTTCAGTT
TACTAATCTTTTGTTTTACTAGAAATTATATGAAGATCAAGGTCGTGAGA
TTCTTGTGAAGACCAAACAACTGAACGACATTACTAAagatttcgaaaag
aaaactaaTTTGGTTGAGGTACCTATCCATGTTTTCAAAGCAGGTGGATT
TTCGTCTCATCCATCCAGTTTAgcaaaatttaatgaatttgGTTGAATCG
TTTGTTATAAAACTAACTGTTGAAACAATGTAGTATTCTATATGCTCTGA
TTCTGGTTTGCAATATGCTGTTTGGGTCACTCCATTGTATGATGTAACAG
AATATTAAATTGCACACTTGTAtcaatcaaaaattgaattgcATCTGACT
TTGTTACATGTTGCTATGAAttgttttgatatttgataACGTGAGATGGG
CTTCCCAAAGTTTCTGATGAGGtcttaaaactttattttttcagggTTTG
AAAGATCATATAAATGGAATGGAAAAGTCAATGAAGGTAGGTTTTTTAAA
AAGGGTTTTGTCTTAAATCAATTTGTTGCAAATATTTTGGTTTGCGAAAT
GCGTTTTCAAAAATACAGGGTGATTAAAAAAACCGCACCCCTTTGACTTT
TTTAacgtaatttttttctgttAGTTGTATAGCCACACAATATTTGACAC
TCTTTCTCTTGCAAAGTTGGAGTCAAAGATTGAACTTGTTTACTGCTTTT
GCAGGTCATGCGTTCAAACCTTCATGAAAAAGAAATGGATAAACAAAGAG
TCGTCAGTCAACTTCAAGAAAAACTAAAGGTTAATGAGAATAcccaaatt
ataaatttttttctgtaaatccAGATAATACAATACCACCATAATAGAAA
AAACGGTTAATACCCAAAGTTCATATCTATTTCTGTAAATATGTGTCATA
TAATACAATGCTTCATAGTTCGAACATATTTCTGGATTCTTCTTTCAGAA
CTATCAAAGCTTGCTGAATCAAAAAGATGAGGAGGTTAGTCTGCATGGAA
CTTAGTATACTTGGTCCATGATACTTttagtttttgaaaactttttttga
ctCCAATTATTCTTTGAAAGCCTATACCTATCTGGATGTTGATATTTTAC
TTGTTGGTATTTTCGGCTATGTTTAATCTCAAAGCTTAATGAGAAGAGTG
GGATTTTGATAATGTCACgagtgaagaaattttaaaagaatacaGAAGAA
TGAATGAGGGCAAAAAAAGGAACTTTGAACAAAATCAATTAGCttagaaa
atttctaaaatttttaacgAGTGAGGTATACTTTTTGGGTACCCGATAGA
GGCATACAAGAATTTTAGATCTCTCTCTAGAATAAAGAATTCTTTTCATA
AAGCCCTTTTCATTTAtataatttcatatttttatttttttaacagaaTT
CAGAAAAGTCAGAGTCGTTGGAATCCATGAAAGAAACTATagcaaaatca
aatcaagaggttttgacttttttcttttgtaattgTGTGGGGCTGGCTTT
TATAACGACAATATTTAAAACGCcaataattcaaaaaacacCCGAACACA
CTTTTCCTCGTGTATAATTATACCGAAGATCATTCAACCTTCTAATTATT
TCATAGCGCCTCCAATTTCAACTCCAATCCTCTCAAGAAAAAGATTCGCA
AATGATTGAGTTGAATGTAAAAGTGAAGCAACAGCAGTTCGAAATCGAgg
taaaaatgaattttaaaataaagataAGATTCTGTTTGTGATCTGAGCTT
ATTTTGAGTCATTTTTACTCTAAGGGAattcatttaatttttcaaaatat
ctttcttttcagaaattgaaatatttattggaagaaaaagacaaagaagT
GCTCGTAAGCCCCTTATGTAAAATACTTTCGGTTTTTCTTTGCTCGTTAT
CTGACCGAAGAAAAAGCGTATCGAGACAATCGCTTTCTCCTCCTTAAAAG
TCTTTTACATTCAAGTTTTTTNAAAGGAAAAGCGTATCGAGACAATCGCT
TTCTCCTCCTCAAAAGTCTTTTACATTCAAGTTTTTTTCTACTGTAAGGA
TTCTCAGTAAAGAGTCCCATATAACTCAACACTATTTTTTTCCAGTATTT
TGGGAATAAGAATCTCCAATTAGAAGAGGAATCGACAAGGGAACGTAATG
AGCAACTCCAATCTCTCGAACTTTTGAAGCAAGATGTCAAAGAGAAAGTC
GCCCGTCTTCAAGCTGCATTGGATGGGTCACAGAAAAGCTATCAGGTATT
TTCCTATGATCATTTGAAAACAGTAAAGTAGCTTTAGAAATACGAGCAAA
GCCTTTTTCAATCTTATGTTTTCATCGCTCAAATTCTTGAGATGCCTTGA
GAGAGTTACCAATAACATATGAGGAATCTTATTCAGCATTTATTagaaaa
ttgtacaaaaatattttattaacaCTTTTTTTAAGTCTTTACAAGGCAGA
TTCAATCAGATGATGGATGAGAAAGATAAAACAATCGAAAGTGTAACTGG
TGCTTTAAAATTTAAAGATGCCCTGATTAAGGTAAATAACTGTATGGTCT
TTTCACGTGCACCTAGGTCGCGATGCTACCACAGATACACAAAACATAAA
CGCCGTAAAACGCACTAGTGACTTTTGCTTGCGCGATGGCGTAAGTTAAA
TTGCAACCTTAGTCGAAGGTAGCTGCCTACTCGTTGACGTTTCACGCGAT
GACCTCACTTTGTGTCAATTTTCACCACTTCATATGTGTAAATAGTGTGC
AATATTTTCCGAGGCTTTAGAAGTGTAAATTATACAAAAAACTCGTTTTC
TATTCCACTTCAAGGAGCTGTTGGCAACACCATCTGGCTTGAATGAAGAT
CAAGAAGCTATCACCAAAAAGCTTCAAAGCTCGTTCCAAATGCTTCAAAA
ACGATCCGAGGTAAGAAATCTTTTAGAACTTCTAATACCCTCAAACCCGA
TCTcctgtttttttcaaaaatccctGCTTTTCCCTCCCAGCCTCCCGTTT
GGATAGTTTGATAAAGCCAATTGTTTCTCCTTCATAGGATCAAGAATTGA
AGTATTTAGATCAAATGCAAAACAAAGATAATGACATTCTGGATTTGACC
AATCAAATACAACAAGCAACTCTTACCACCCAAAAATCACAAGCTTTCGT
TTATAATCTGCAATCTAAAATCAAGGTAAGTTTTTCCTTTCATCATTGNT
CTCTTACCAACCAAAAATCACAAGCTTTCGTTAATAATCTGCAATCTAAA
ATCAAGGTAAGTTTTTCCTTTCATCGTTGATTTCTATATTGAAAGCTTTC
CACCAGCGATATTTAGTACACGAGCTAGGCTGCTAAAATCCTCTAGTATG
CTTTGTTATCAGAAAACGCTCAGATAAACACGCTACACGCCGTCTGAACC
TGTATCAAACCGATACACGCAGTCTAGTCATCAGCTCAATGTGCTCATTG
AATCTTTTCGGAATCGGTTTTGTACTTGTGCGATTCTGTATGCAATTTTG
TATTCTGACTGCTTTTGAATTGGTAAGTCATACATCAGATCCTCCTTCCA
TGTTATACTTTACATATTTTTTCTATAGGGCTTGAACGCAAACGCTGACg
aagataatgaaattttagACAAATTGAGGAACTCGTTGAAGAATGCAATC
GATAAAGAGCGAGTAAGTTTATGAGCATTTTGTGgtcattctttttcatt
ttaattctCTTGTGTTTAATTGTAGAGTTCTACTTCTTTTCACGAATAAA
GTTAGTAAGCattcgttaattttttcagCAAGATTGGAGAGACTTAAGAG
ACTGCTTTGATCTTTGATCTTTAATTTATTTCTCTCACAGGCTTCAAGAC
AAGATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatcaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010338	XLOC_010338	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:281423..285469 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.563304	0	0	0.236908	1.17061	1.86235	0.319371	0	0.306055	0	0	0	0	0.495392	0	0	0	0	0	0	0	0	0	0.971002	0.1491

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00018431 vs. Swiss-Prot (Human)

BLAST of TCONS_00018431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00018431 (transcript) - C. hemisphaerica