TCONS_00018425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018425
Unique NameTCONS_00018425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018425 ID=TCONS_00018425|Name=TCONS_00018425|organism=Clytia hemisphaerica|type=transcript|length=2473bp
CTACAAGGTTCAATGAAAAGTAAATAAGCACCATCACCATGGCCAATGCT
GAGGATGTGACCAACTGGTTAGAAGCTATCGAATCTTTCGAACAGAATCA
ACATGAGGATGCCATCTTGAAATTTCAGAGTTTGACACCTACTGCTAAAG
TCATGTTCAACATTGGTTGTTGCTTCTTGAGTTCAAATGATTGTACAAGG
GCACTGCAaaaatTAAACCATGCATTGACAATGGACAATCACATGGCCAT
CGCATATTTCTTACAAGGAGAACTCAACTTCGAAGAGAAAAAATATGCGG
CTTCATATAAAAGTTATGACAACGCACACCAGGCGATGAGAGGGAAAACG
TTCATCGATTATCGACCACTGGGTTTGCAACATATCATGCACGAGTACCA
GGTGATAGGTAATATGTTGATACTGGCAAGAAAGTACGGGATTGGAGATG
GGATCGTTCATATGAATGAGCAACTTCAAAACAATGAACATATTCAACAT
ACTATGAATTCTATCAGGTCTGGTGCATCAGTCAGTATCGTCAAATTTCT
ACCAATCACCTTGTTCAAACCAAACAAAGCAAGCATTCAGAATGTCAACA
AAAAGAACTATCTTGGACAAGCTAAGATGCTAGAGAAGGGACCATCAACT
CCACCCATTGCAGCTCGACGCCCTACACAAGCCGCCCCTGATCGCCGCCC
TACTCAAACAGCACCCAATCGAACGCCATCACCACGCCCTAGACGCATCT
CAAAGCATCCTGATTCATTTAATTCTATAAAAGGCTCTCCACCAAATCCT
TCATTTAGGCCTTCCTTTTCTCAAACACCACCTTTAACAAAGAAGGCCTT
CCCGATACGACCAGCCAAATCGATGGAGAATCTGGATCAAAAACCAGCGC
CAAAAACACCTCCTATGAGACCTGTTAAACCATCAGATCGTAAAACATCC
AGATCTGTCGAAGCTGATCTTCCAAACAGAATCTCAATGATTGGTAGTCC
TCCAAAGAAACCTCTACAACCTACTTTCTCAACGCCTGCAAAACCACCCA
GACCTTCCATTCCAAAACAAGACGACATCTCATCACCGAGGTTACCAAGA
AATCCACCGCCTCCTAAACCAATCAACAAAGCCCAAAGCTTAGACACCAC
AAATGATAATTCAAAAGCGAACATGTTAGAACGTAATTTTTCgatcaaag
aaaaacagttgaTGAGAGTTCTAATGGGCGGTATGGGCGGTGGCTCGATG
ATGGGTGGTATGGGCAGTGGTCCGACGAGGAAAACATCTTGTGAGGATAC
TTACCTTGCACCACTGgaaaaagaaacaccaaaaGCTCCCCCAGCTAAAC
CAAGACCGATCAGTATGCACCCTTCGTCTCTCTCTAACAACAAGCCAACA
ACAAATATACAAATGTCGTTGTCAGGGAAACCAACCAAAGTGCCACCAGG
GCCACCAGGGAAGCCTTCTCCACCGACGCaaacaaaaccaaaaccacCTG
TACTCAATAAATTCAATACCAACAACGAAAACAATAACACCCCATCATCA
CCGCCAAAGCCTACCAAGAAACCTATAAACAACAATCAACCGAAACCTTT
CAATCCAAAGCTTCAAAACAACGACAATAAACCTAACTCATTCAACGCTA
TCCTTGATCAACTTAACCAGAATTCAACTCAACCAAAACCGTTCAACAGA
CCATCTACAAACAGCAACAAGTCTTCGTCATCTCCACCAAAAGTTTTCCG
ACAAGCAATCAACAATAACCAACCACAATCACCAAAACCGTTCAAACTAC
CCAACAATAAGCCAAGCGAGACTAAACCACCAATTAGACCACCAGTACCT
CAAAAACATTCTCCAGAGGCTGAAGAACTATACGCCACTATAGATGAAAA
TCCAACAAATTCTTACAATGATAACAACAATAATACCGCTAAAAAGGCGC
CGCCTAAACCGCTTCCAGTCAGCATTGAGCAGCCAAGCGTTACTGAAGAT
GCAATTTATGGTAATCTTTTCATGCCGGTGTCTCAAAACAAACGCACTGC
TCCTCCAAAGAAGCCCTTACCTAAATTGACCTTGTGAAAAGTTCTTTACC
ATGGAAATTAAAAAGCTATGAAATcttcaaatagaccttttcataaatta
cgtcacgaacatcacttgcctcgttttgaaattattgccaaggtgattaa
ctcccagcggatttcaTTAGAACTACtttcttttcatgaaaaaatgattt
aatgtctcaagggacataatcaccatggtaattgttttaAAACGAGGCAA
TGATGTTCAttacgtaatttatgaaaaggtctattcgaaCGAACACATTT
GCCTCCTCAGCTTGATAGTCGtataaaatctttttctaattcgaattttt
ctctaatttgaagaatgtttttagtctcttaaagttcgaattagagaaaa
tcAACAGTAATTTTAGATAGCCG
Run BLAST on NCBI

transcript from alignment at sc0000300:233332..238359+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018425 ID=TCONS_00018425|Name=TCONS_00018425|organism=Clytia hemisphaerica|type=transcript|length=5028bp|location=Sequence derived from alignment at sc0000300:233332..238359+ (Clytia hemisphaerica)
CTACAAGGTTCAATGAAAAGTAAATAAGCACCATCACCATGGCCAATGCT
GAGGATGTGACCAACTGGTTAGAAGCTATCGAATCTTTCGAACAGAATCA
ACATGAGGATGCCATCTTGAAATTTCAGAGTTTGACACCTACTGCTAAAG
TCATGTTCAACATTGGTTGTTGCTTCTTGAGTTCAAATGATTGTACAAGG
GCACTGCAagtaagtacacgtttttttataagaacaaactatataagaac
ataaggcttcgatggcgaaaatgttaagaaaaagttaagaaaattttaag
gctttgtggactctgaaacacccaatttcttaggaaaatggacaaaaata
ctcaaaaaatggcgaaaataagaacatgttaagaacatttttaggcttaa
aaactcaaaaagttaagaacatctgaaggcttcaaagattttggatgttc
tttttaaaaaaaactacgTGTATTTACTGTATTTGTAGTTTTGATGCTTG
TTGAGTAGATTTGCTTGACTTTTTTAGCTGATTTTATCCCTGTCTCAATA
TGCCAGAATTACCCCAATTGAACACCAAGACAAAAATCATCATTTGAACA
TAAGGTTGTTATCCATAGTGGTTTTGCCAAGAAGCTACTGGTGATGTTTT
TGCCCAGTTTCTGATTACATAGTAGTCAGATAGAGAAATACAACCAAATT
AACTCAAAAATAACTGagagaaaattttactttagaaatTAAACCATGCA
TTGACAATGGACAATCACATGGCCATCGCATATTTCTTACAAGGAGAACT
CAACTTCGAAGAGAAAAAGTAAGAAGACGttattttaaaagatatttaaa
GGATTCTGTTTCCTTCAAAAAGGGAAAAtgattcagaattccagagtgTT
TAGGCTACCAACATCCTTTAACGAATTCGCACTCCTTCTTACTTCTTACT
TCTTCCTTATATTTCCTATATTTACATTTTTGTAGAGGTCTTCGATTCAC
ACTAAGGTAGTGTCAGCTGCAATTACTTGCCTCTTTACTGCCTCTTTACT
GTCTCTCACTACCTTTTCgatcaaaagttttcaaatattgCAACCTTTCT
TTTCTCCCTTTAGATATGCGGCTTCATATAAAAGTTATGACAACGCACAC
CAGGCGATGAGAGGGAAAACGTTCATCGATTATCGACCACTGGGTTTGCA
ACATATCATGCACGAGTACCAGGTACAATCTGCGTCTAAATATTATGAGA
ATTCTCGTTATTTTCGGGCGAGGAAGTCGCTTTTTGGGCGAATATCTCAA
TTTGAGAGGGGTTCATAGAATAAAACAATACCTATATCGACCCTAAACAC
AAAAGGATTCAATGTAAGCTGTGGGGTTTGAAGGGGCTGAAAAACTACTT
ACTCGGATTGAGATCAGAATGTTTGAAATGACTCAAATCATGTCTGACAA
CACGTTAATCTTTTCTACAGTGTCATATTGACTTTGTTAATACTATTCCC
ACTCACAGGTGATAGGTAATATGTTGATACTGGCAAGAAAGTACGGGATT
GGAGATGGGATCGTTCATATGAATGAGCAACTTCAAAACAATGAACATAT
TCAACATACTATGAATTCTATCAGGGTTTGTActttcaatttctttaatt
tctttcgTATTAAGACTTTTTCTCATCGCAagaagcgaccgtagtgcagt
agtagagcatccggctacggtgcgcaaggtcgtGAGTTCAATcctcagcc
gggtcataccaaagatttccaataTGGTACTTGaagcctctctgcttgat
gctcagcaattaagagaaggatcaagggtgaGTTGAGCAACCAAAGGGAG
AAAGAGAGGctccctcccctaccttcgggtagatagctttCGAAATAGGA
ATAAtcttcgggtcgcctccaacTGCGGTAACAGACTTAAACATCTCAAA
AGAGTACAACGGCTGTGGAATGAATTTTTTGCAAGCACGAAGAAGACTTT
AGTCACAGATATTTCCAGTTTCTAATATAGCGTGTATACCCAGGGATACT
AGCTTGGTGGAACGACAGGCGTAACACACCCTTGTATTCCATTTGCCTAG
GTGCCCACTCCCCCGGGCGTGTGTATATAACAACTTCGCATATttcaaca
tatttttcaaacttttgatgTTTTTCAGTCTGGTGCATCAGTCAGTATCG
TCAAATTTCTACCAATCACCTTGTTCAAACCAAACAAAGCAAGCATTCAG
AATGTCAACAAAAAGAACTATCTTGGACAAGCTAAGGTATTGTTCAACAT
TTAGCTTTTGTATAATTTCTTCCAAAGTTAGATGACGAGAGAAGATTAAC
TATAAAGAATCTGTACTCGGCTAAAGTCTCAAAAGTGTGGACATTTtggt
ttttttaccttttctatGCACCCGTTCATGGTATGTTAGAAAGTTTTACA
ACGTgggaaagataaaagattgaaaaacgaagaagaaaaatgaagttgga
aaaatgaagattttttgtattgttttaaaaatcagGATGTGAAAGTTTTT
AGATTATTTGAACCTTGCTGATTTCCAATCTGTGTTCAGATTTTGCGTAT
CTTTCTTAGATAAAAAGTTATAGTCCTTTGAAGTAGGCCTTAAGCggcca
aaattgaccgaaaatagcaaaaattaccaacttcacagttaatttccttg
gaaatatctttccaacggtgtacaACTTTCTAACATAGCATCAATGGTTG
CTGAAAAAGGGCTCCAAAACTAAAGTATCCACATatttttgagacagact
ttaactaTTTATAGAGCTTAATGACCTATTAAGTATTATTTTATATCTTT
TTGAACAGGTTGTATCGACTGAAAACACCGAAGAAATATATTCTACATTC
TCTGGGAAAAAGGTTTGATTTATTTACATCTATCCGTGATAACCCACAAT
GATGACCACGCTTAAAGTTTTATTCCTCTAAACTAAATCCAACAACTGTA
TTGGTTTGTTTTAATCTTTTAGGGGTTAGCACCTATTCAGTCAATAAATA
ACTGATAAGGTAAGATAATAAGCTCATTAGTGAAGTAGAAATTGACAAAT
GACAAATGGATATTGACAAATGGATATTTTTCTGTAAACTTTAGGTTTTT
GTTAACGATGTTTCTGTATTTTCTCCTTTAGATGCTAGAGAAGGGACCAT
CAACTCCACCCATTGCAGCTCGACGCCCTACACAAGCCGCCCCTGATCGC
CGCCCTACTCAAACAGCACCCAATCGAACGCCATCACCACGCCCTAGACG
CATCTCAAAGCATCCTGATTCATTTAATTCTATAAAAGGCTCTCCACCAA
ATCCTTCATTTAGGCCTTCCTTTTCTCAAACACCACCTTTAACAAAGAAG
GCCTTCCCGATACGACCAGCCAAATCGATGGAGAATCTGGATCAAAAACC
AGCGCCAAAAACACCTCCTATGAGACCTGTTAAACCATCAGATCGTAAAA
CATCCAGATCTGTCGAAGCTGATCTTCCAAACAGAATCTCAATGATTGGT
AGTCCTCCAAAGAAACCTCTACAACCTACTTTCTCAACGCCTGCAAAACC
ACCCAGACCTTCCATTCCAAAACAAGACGACATCTCATCACCGAGGTTAC
CAAGAAATCCACCGCCTCCTAAACCAATCAACAAAGCCCAAAGCTTAGAC
ACCACAAATGATAATTCAAAAGCGAACATGTTAGAACGTAATTTTTCgat
caaagaaaaacagttgaTGAGAGTTCTAATGGGCGGTATGGGCGGTGGCT
CGATGATGGGTGGTATGGGCAGTGGTCCGACGAGGAAAACATCTTGTGAG
GATACTTACCTTGCACCACTGgaaaaagaaacaccaaaaGCTCCCCCAGC
TAAACCAAGACCGATCAGTATGCACCCTTCGTCTCTCTCTAACAACAAGC
CAACAACAAATATACAAATGTCGTTGTCAGGGAAACCAACCAAAGTGCCA
CCAGGGCCACCAGGGAAGCCTTCTCCACCGACGCaaacaaaaccaaaacc
acCTGTACTCAATAAATTCAATACCAACAACGAAAACAATAACACCCCAT
CATCACCGCCAAAGCCTACCAAGAAACCTATAAACAACAATCAACCGAAA
CCTTTCAATCCAAAGCTTCAAAACAACGACAATAAACCTAACTCATTCAA
CGCTATCCTTGATCAACTTAACCAGAATTCAACTCAACCAAAACCGTTCA
ACAGACCATCTACAAACAGCAACAAGTCTTCGTCATCTCCACCAAAAGTT
TTCCGACAAGCAATCAACAATAACCAACCACAATCACCAAAACCGTTCAA
ACTACCCAACAATAAGCCAAGCGAGACTAAACCACCAATTAGACCACCAG
TACCTCAAAAACATTCTCCAGAGGCTGAAGAACTATACGCCACTATAGAT
GAAAATCCAACAAATTCTTACAATGATAACAACAATAATACCGCTAAAAA
GGCGCCGCCTAAACCGCTTCCAGTCAGCATTGAGCAGCCAAGCGTTACTG
AAGATGCAATTTATGGTAATCTTTTCATGCCGGTGTCTCAAAACAAACGC
ACTGCTCCTCCAAAGAAGCCCTTACCTAAATTGACCTTGTGAAAAGTTCT
TTACCATGGAAATTAAAAAGCTATGAAATcttcaaatagaccttttcata
aattacgtcacgaacatcacttgcctcgttttgaaattattgccaaggtg
attaactcccagcggatttcaTTAGAACTACtttcttttcatgaaaaaat
gatttaatgtctcaagggacataatcaccatggtaattgttttaAAACGA
GGCAATGATGTTCAttacgtaatttatgaaaaggtctattcgaaCGAACA
CATTTGCCTCCTCAGCTTGATAGTCGtataaaatctttttctaattcgaa
tttttctctaatttgaagaatgtttttagtctcttaaagttcgaattaga
gaaaatcAACAGTAATTTTAGATAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010336XLOC_010336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018425-exon-sc0000300-1491911889:233332..233540TCONS_00018425-exon-sc0000300-1491911889:233332..233540Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:233332..233540TCONS_00018425-exon-sc0000300-1510915933:233332..233540Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:233332..233540TCONS_00018425-exon-sc0000300-1575043694:233332..233540Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1491911889:234067..234149TCONS_00018425-exon-sc0000300-1491911889:234067..234149Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:234067..234149TCONS_00018425-exon-sc0000300-1510915933:234067..234149Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:234067..234149TCONS_00018425-exon-sc0000300-1575043694:234067..234149Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1491911889:234445..234553TCONS_00018425-exon-sc0000300-1491911889:234445..234553Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:234445..234553TCONS_00018425-exon-sc0000300-1510915933:234445..234553Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:234445..234553TCONS_00018425-exon-sc0000300-1575043694:234445..234553Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1491911889:234840..234956TCONS_00018425-exon-sc0000300-1491911889:234840..234956Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:234840..234956TCONS_00018425-exon-sc0000300-1510915933:234840..234956Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:234840..234956TCONS_00018425-exon-sc0000300-1575043694:234840..234956Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1491911889:235510..235617TCONS_00018425-exon-sc0000300-1491911889:235510..235617Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:235510..235617TCONS_00018425-exon-sc0000300-1510915933:235510..235617Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:235510..235617TCONS_00018425-exon-sc0000300-1575043694:235510..235617Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1491911889:236513..238359TCONS_00018425-exon-sc0000300-1491911889:236513..238359Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1510915933:236513..238359TCONS_00018425-exon-sc0000300-1510915933:236513..238359Clytia hemisphaericaexon
TCONS_00018425-exon-sc0000300-1575043694:236513..238359TCONS_00018425-exon-sc0000300-1575043694:236513..238359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:233332..238359 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236417	0.120723	0	0.248504	0	0.00622564	0	0.449083	0	0.905807	0	0.0725438	1.21769	1.33086	1.94687	1.3235	1.84783	2.60034	1.3345	2.84848	1.08322	0.480868	0.815498	1.1708	5.54179e-06	2.35583	3.39112	4.83528	12.7926	13.5198
Blast
[Close]
BLAST of TCONS_00018425 vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.173e-17
Identity = 66/259 (25.48%), Postives = 115/259 (44.40%), Query Frame = 3 
Query:   39 MANAEDVTNWLEAIESFEQNQHEDAILKFQSLT-PTAKVMFNIGCCFLSSNDCTRALQKLNHALTMDNHMAIAYFLQGELNFEEKKYAASYKSYDNAHQAMRGKTFIDYRPLGLQHIMHEYQVIGNMLILARKYGIGDGIVHMNEQLQ---------NNEHIQHTMNSIRSGASVSIVKFLPITLFKPNKASIQNVNKKNYLGQAKMLEKGPSTPPIAARRPTQAAPDRRPTQTAPNRTPSPRPRRISKHPDSFNSIKG 785
            M+  E ++ W E + + ++   + A+  F ++  P +++ FNIGC +    + T A +    ++  D H+A+AYF +G L ++ +KY  + K    A   +RG   IDY+ LGLQ  +   +V+ N+  +   Y   +      EQL           +  I   M  +        V      LF+PN+  +  + KK+YLG+A ++         +   P Q        Q A    P PRP    K P+ F +++G
Sbjct:    1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM---YAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQP-------QAA---EPPPRP----KTPEIFRALEG 242
The following BLAST results are available for this feature:
BLAST of TCONS_00018425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCF21.173e-1725.48Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF... [more]
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