TCONS_00018413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018413
Unique NameTCONS_00018413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018413 ID=TCONS_00018413|Name=TCONS_00018413|organism=Clytia hemisphaerica|type=transcript|length=2688bp
atTTCGTTGTTATGGTGAGATGATGTAAgaaatatgattgataaacaTCA
TTGTGATTTTAATATCGTTGAAAAGAGCATTATCTtcctttttgagattt
tcttgcTTTGATTTGTGAACAGTATACAGTACAGTTTATTAAGCTAATAT
ACAAAGCAGAGTGCATTCATCTCATCGGACAAAAAAGTGACAAAGCCCAA
AAACAAGATCCtcatttctttgtttctttgtttCATGTTGAGGGACAGAC
GTTCTAAGACAGGAAAGATTGCTAATCACTAGTAGAGAAGAGAAAGCAAC
TGCTCAATGACATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGCTCAAA
TTTAAACATGACTCCATTGAAGACTTTTATACCCTGAGGTGTTGTGGTAT
ACCGGCTCGAGTATTATGGTTGATTCGGCTCGTCTTCACTCTCTACACCA
TCGCCTCCATCATTTTTTCCATCGCTTTTTATAACGACCAGAAGTGGATT
GTCTTTCTAACCAACTGGGGCCTCATCCTCTCCACTGTCTACTTCATCAC
AGCTCTGGCTGTCTCCGGTTATTACATTTTCCGTAATGCACCGGAGCCGA
TGACGAATTCGGACATCCCTATGTACACACTGGAGAAGGATCATCAACAA
AACCCATCATCGGGCGACCTTAATGAAGACCGTTGGTTACCATTTCCCAT
CAAGTTTCTTTGGTTTTGGCATCACATCACATACGGTATTGTCACTACCT
TGATCATTCTGTACTGGACATTGGTTCGACAACCGAAACACTTTTCCACC
GGAGATCTCACTTTCAGTTACATCAATGATCACGGTGGAATCTTTCTTCT
TCTCTGTATCGATTTCTCGTTCTGCTTAATCCCGGTCCGTATTTTACACG
TCATCTACACTCTGGTAGTCTGTATTTTATACGCAGTGGTGACAGTGATT
TACAACTTTGCAACTGACGATCCTGTTTATGAGGGCGTGTTGGATTGGCA
AAACAAAGCAGGTTGGGGCGTCATTTACATCTTGGGCGCTATTGTTTTGC
TCTTTATATTACAACTCATTTATTTTGGATTCTACAGGCTCAAGTTGAGG
CTGAAGAATGATTGAATAGTGTTCCACCTTTAGGGGAATAATGAGGAAGA
CAATAAGGGTTAGGGGGTCAGAAAGAGGTTAAAGCTTTCACTTTGGTTTA
AAAGTAcatgctttttataagaatatagtCTATAAGAATGttaatgatga
aattggccacaaaaatctgaaatatggtaagaatatcgtCATCATGGAAC
TTGGCAACAGAACCTATGAATGTTATTTTCAAAGCATTTTAGCTGTAAAT
tgtcattttatgctttagttattatgtattacatgttaaattTAGGTAGA
CTTTGGATTCTAGCCCAAGAACaccataagaatattttagaatgattttc
tccaaaaagctaagaatatccaggataaaatagaaaaacaccatttctat
tgaaaaagtGTGTATtagattttcttgattttcacgTCACCTTTGGTATG
TTTTGTTGTTGGTAATAACGATTTGCTtatattttctcaaaattattTCC
TTATAAGAAAGACGAAGCTTTCTCAATTGTTGctcaatttaaaataaatt
cgTAAACCtgataaaaataacattttatacTATCTTAAATGTAGAATCTT
TTTTTCTAATCTGATTTCCTCAAAAAGGCAGTATGGAAGTATATAATTTT
AAGCGTTTAAGAATTTCAAAAGGGAATATTTTGTAACAAGTAGTAAAATT
CATTTATCAATTTATAGAATATTACGATGACGAGATATAATATACatata
acaaattatttttaggagtttttctaattttttttctaaatttgtacTGC
ATTTGTATCTTTTATATAATGGGTAATTATTTGTAGTTTGTAGTTAggta
atattttgatattttcgtaaCAATCAATTTTGAGTGCAGAAGCGATTAAT
TTTAGTGGATTCATTTTCGCGGGAAAATCTTTCACAAGATTTAATAATCA
ATTTTAATATGAGAATTCTATAAAATCCCAATCACGTAGCTTGGAGCTTG
TGCATCGTTTTTTATGCATCCAGTGTTTATTTTACTTCTTTATTCGCCAA
ATTGAATTCTTCTCTAACAAAGGCAGTGCCGTAACCACtgggcaaaaata
tttttgggcacTTCTAACTGCAGACCGTTTTGTTAGTACTTGTTGTAATC
TATATAGAGCTCAAAAAGTCTTTAGATGGAAAATATACCTgatattttgt
atcatttcagATTTCTTGTCGTTCGAAATTGACGTTTAGTGAGGATTTTT
CAGCCAATCTAGATGGTATAAGATCCAAAAAAACTTTCTGGTTCGTTTGA
GACCTCCCTTATATACTAAAAATGTGCCCTCCCCCCCCAAAGCAATTTTT
GTGTTTACGGCCCTGAACCATCTAAATGTATTTACGTATGAACACTTCGA
CATAGCTTGGTGTGTATccataatttatttttgtaagCCTTGTagtattt
ttgtagattttgtagtatttttgtagattttgtagTATTTGAACGGTTCG
TAATCATTTTAGTGTTCATTTTTGTCAGGGGAAGAAAAAAGATGATAACA
TGAAACATGCTGTAGTGATGCATGaacaaaaattaatt
Run BLAST on NCBI

transcript from alignment at sc0000300:56587..64027+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018413 ID=TCONS_00018413|Name=TCONS_00018413|organism=Clytia hemisphaerica|type=transcript|length=7441bp|location=Sequence derived from alignment at sc0000300:56587..64027+ (Clytia hemisphaerica)
atTTCGTTGTTATGGTGAGATGATGTAAgaaatatgattgataaacaTCA TTGTGATTTTAATATCGTTGAAAAGAGCATTATCTtcctttttgagattt tcttgcTTTGATTTGTGAACAGTATACAGTACAGTTTATTAAGCTAATAT ACAAAGCAGAGTGCATTCATCTCATCGGACAAAAAAGTGACAAAGCCCAA AAACAAGATCCtcatttctttgtttctttgtttCATGTTGAGGGACAGAC GTTCTAAGACAGGAAAGATTGCTAATCACTAGTAGAGAAGAGAAAGCAAC TGCTCAATGACATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGCTCAAA TTTAAACATGACTCCATTGAAGACTTTTATACCCTGAGGGTAGGTgaatt ttttcatatattttgaCTGTCATCAACCTAACAGAATTTCTGTAAACTTC TTCTCATTTAACTTATGGCATGCTGGATGCAAAACAAATACACTTCTTTT aatacttctttttttttacatccAACCTTACAGTATGTGTTTATATACAC AATTTGAATGTctcatataaaaatgaaaagggGAAAAGGGAAGACGACCC TGACAGTCCGGCATTTTGTCCGGTGCCAAGGAATATCCCTCAGCCACACC AGATACGTGTGTTTCGAAAATAATGCGCACCGGACTCTCAAGTCCGGTGC TGAGATTGTCTGGTGTTAAAAAGTATCCTCATCCGACACCAGACTTTCCG GTGTAGTCCAGTACGTTGGCAGAGACGCAGGGAAACTTATATCTGGATCC TAGGAAATATGAATAAATCTGGCAATTTTTTACCAATTGACCAATAGACC TTTGGCTAGTgaggatgtcatgttgaataattaaaaactacATCACTAAA ACAATAACACATTAACGCATAATTACCTATGGTAGTTGTGTATTAACATT TTCTTATCATTGACAATGGAACCAATCTATCCAGAATTTGCTTTCAATTA AATTCAATCAtcaattgcgtttgacaatcaaAATTCCAATCGTTCCATTg catttgattggttcgatcaTCAATTCTGCTCGATTCAAATTTTAACATAT TCTATCTTTAAAAATTGCTCATAACCttttctagttctagttctattaaT TAATCACATAATACGCTACATTAAATTATCTggtacattatcatgatatt gaaaataaaagtaatatgaaaatacctgataaaatgaaaacaactaaAGC TAAAAGGGGTTGCAATAAGAAGTAGTTAATTACAGAGCTAAAAGTAGCAA GATATGACTGGAGCTGAAAAGCCACCACAAGGATATAGTAATAGTGTAAA GTAAAGTGAGAGGCTGTGATAATGTATGTAGACCTGAAAGACTTGTGATT TGATAAAACATTGAGAACTGCATAAAGATTTTTAGATAATAAATGTGAtt acttaaaataaaatattaacatTCAGCATCTTCAATAtaagctaaaaaga aaatagtgAATAAATAGATTTGCCTTGATTGCACGACCAGAGTtgattag aaaataaaatttgagaatttgTGAGATTAGAGGATGATGAGTTGATGAGA TTAGAGACTAAGGAGGCACAGCAGGAATAGAGCTAATAAAAGCTAGAAAT CAGGAGTTACGAACAGGTGAAGGCAAAATGTAAGCAATTAAAATGATATA TACAAATTAAGGGTAGTGCTCATTAACACCTTTTAACACCATTTCCTGGC AAAGTTTTCGCAATACAGATATTGTAAGTTGgcctaatgtcgacatccct catctaatccAAACACCCTTCTGATAGATAGGATTGAATTAAGGTAGGTC TGAGAAACTGATGGAAAAAGGATTTTTTCCACTCTAACGGTTATTTAGCG ACCGTCAATTCCAACCTCACTATTATTCCTAgctttaaagaagggtgtca gaattagatgagggatgttgaCGTTCGACCAATTTACATTATTTTGTTTA ACTccgttaactgttcttatcctCATGCCAAAAGATCTGGCTCTGACTTT TTTCTGTTATTATACTGTTGACCAGAGAGCCAGAAAACAATTATGATTTT GATCTCTGATACATCTTTTGTCGATAAAGATTTCAATTAAATGTTCATTA CGATGGAGCAGTTTTCTCCATCAACATTGACACCCCTCTTCTAATCCTGA CACCCTTCTCCTTGCTTATAAAGTAAAGAAATCTTATTAGTGATTCTGGC ATTCCTATCGCTTAAGAAGGGCGAGGAAGAAGGTTTTTTAACCACAATGG AGCTTCATGTTTTATACATCTTCCCCAAAAGATAACCTATGCATTCCTTA CTATCcctctatttctttttttggtCCTTCTGAGGGTGTCATTGGTATAT AATACTTTGACATTTTCAGTGTTGTGGCGTTTCGAAACATCTTTGGTTGT TGCGATTGTTATTTGCTTTGTATGCACTGGCTATACTCATCCATTCAGCT GTTGCATTCCATACTCAATACTGGGCAATATTTCTAACCCAATGGGGACA TGTTGTTTCTACTATTTACCTCTGTACCGGCTCTGTGTTATCCATTTATT ATACATTCCAAAAGTCAAATATTATTGTCAGCAACAAAGCTGATTTTGAA CTCTCCTCCCCTGTGACGGACATGCACGATAAAGTTGTCTTCAGAGAGAT ATCAGTCTCTAACATGGTACCCAAAAAGGTGCGTTTCTTTTGGCTTGTAG CCAATATGTCATATGTTATTGGTGGACTTATCATCATCCTGTACTGGGGA TTCGTACACCAAGATCACTTCTTGGATGGTGCAGATGCCGAGTTTGCAAA CATCAACTTGCATGGAGTTGTATATGGTCTGGTTGTCATCGATTTCCTTC TGAGTGGAATACCTATCCGCATCTTACATGGAGTGTATCCCATTCTATTT GGTCTCACCTATGGTGTATTCTCTGCAATCTTTACCTTATCAACCAAACG TGCTGTCTACCCTGTCTTGAAGTGGCATACACATGCTGTTCAAgctttga tttttagtttgatgGCTCTGGGTGTTGTGATAGtcgttcaaatatttttc tatggaGTTCACAGATTGAAGAGGAGAGTGCGATCGAGAACGATGACCAT GCCTTAGGTTTCTCTAAATTCTATTAATTGAGAGCCATGGTATTGTCTTT CTCTAATACAGTAGATAACATGAACGAACTGCTTTATTTAACACCATTGA GATCAAGGTGGGAAAATGTATTTAAAGATGATTTTTATTTAGTTTCAcaa gctttttatttttttgcacaataatATGATATTTTATTATCAGTTAGTCA TGTTGTtaatatatttcattttatcTTGATATACACCATTCATTTTTATT GTAAGTGACAATATATTTCATTGTTGTGTGTAGCCTTGTAGATAATTCTT TCATTCGTCATTTTAGacattcttttcaaatttaaatagTGTCTAATACC CGGGGGGTAGTAGGTTTGcaagatgacgggtatgtccgagccaaagttca ATAATCAACCCAAAgagaaaatttcagccaaaatgttcaaatttcagtcc aaatttcaagaatttattatttattattttcagtgagttaatttttgatt ttcgtaattttggaacccttacatAGACTCGATTGCTTTTTAATTGTTCT TGTACTCCTTTGAGGGATTTTTGAGAGTGTGAAANATCGATTGTTTTAAA GGGATTTTTGAGAGTGTGAAAAAGGGAGCCTTATGGCTTGCACATACCTG GCACCcgttttgcctaagtacctccCCCCCTCGGGTCCAATGTCCATTTT GCAAGACATACTTATTTTACTATCTTAATCAGCATGCTTTATTCAACTCC AGCAGACTTCAGGCCTGAAAactattataattttaattgatatgaagaaa gaatattttcaattaaagaCTTAGAAAATGACCCTTTTTCAATTCTTGAA CACGCCCTTGCAcagttttttatagaaattcttttataaaaaccacaATG TTTAAATTTGCAGATTTTGTTTAAGAATATTCAAATAGGTtttgttcact ttttctttggtcagaattttcaagttttccaTTTCTTACCTAGAGTGTAA GGCTTAACATTTTTGGAGCTTAGTTAATTAAATTTAGTTccattcctttt ttttgcacGTTTCAGACAATACTTGGAGGGATGATATGTTTTGGTTAAAG ATTTCCCTgcttattttttaaaatttaagaatcaGACGAAAAAATTGGAA TATTTTAAGAATCATGAGGCTCACTTCGATTTATATAATTataatagaaa aattaaaatatttataatcATGATATTTGTATTATCATTCATAATATTGA AGCACCCCCTTTTTCAGCCAATGGGGGTAAAATTGACaaaccaaaactcg atggggattgatattcccatgtttttccatggcttggattTGATTTCCAT TGTTTTGGAGCCTGAAGATTCAGTAGGGATGAAAAACATTTGTtacaagt cagaaaattcagtagggatgAAGAATGGctcaatattttgcagtgaagat ctcattatctgattattttcagcggggaaaAAGTTTGAGTATGATTTTCT ACTGAGGACGACTTTTCACCATTATTTTCCAAGggaaaggggtcccagtg ggtgtTTTGAATGGTCGAACATTTATTTTGATAtgtgtttttttaattct tcaACTTAACATAGAATGTAATATAATACTTATGATGATTTCCAAAGGTA AATTTTCTGCgatatgaaaatgttttaatatATTAGAATAATTGATAAAC AAATGCACAAGTAATTATTTTTGAACAATGGAAAATTAATTACTTGATTT GAAAATTACATACTTCGTTTATGTATTGTGGACCATCTTTGAATAAACTT TGAGATAGATTTTGAAGGAATCATTTACATCTTTAAAAGGTTCAGTCGAA TAAGTTTCTTTTAATCAGCTCTTTAACGACGGGCATTTCCCCGTCCGgcc aacattaaaaataaataggaTGAGAAATGTTTCCCTTATCTGTATAAATT ACCAAATAACTAACCCTCGACTAACCTCTTTTTCGTTCACAGTGTTGTGG TATACCGGCTCGAGTATTATGGTTGATTCGGCTCGTCTTCACTCTCTACA CCATCGCCTCCATCATTTTTTCCATCGCTTTTTATAACGACCAGAAGTGG ATTGTCTTTCTAACCAACTGGGGCCTCATCCTCTCCACTGTCTACTTCAT CACAGCTCTGGCTGTCTCCGGTTATTACATTTTCCGTAATGCACCGGAGC CGATGACGAATTCGGACATCCCTATGTACACACTGGAGAAGGATCATCAA CAAAACCCATCATCGGGCGACCTTAATGAAGACCGTTGGTTACCATTTCC CATCAAGTTTCTTTGGTTTTGGCATCACATCACATACGGTATTGTCACTA CCTTGATCATTCTGTACTGGACATTGGTTCGACAACCGAAACACTTTTCC ACCGGAGATCTCACTTTCAGTTACATCAATGATCACGGTGGAATCTTTCT TCTTCTCTGTATCGATTTCTCGTTCTGCTTAATCCCGGTCCGTATTTTAC ACGTCATCTACACTCTGGTAGTCTGTATTTTATACGCAGTGGTGACAGTG ATTTACAACTTTGCAACTGACGATCCTGTTTATGAGGGCGTGTTGGATTG GCAAAACAAAGCAGGTTGGGGCGTCATTTACATCTTGGGCGCTATTGTTT TGCTCTTTATATTACAACTCATTTATTTTGGATTCTACAGGCTCAAGTTG AGGCTGAAGAATGATTGAATAGTGTTCCACCTTTAGGGGAATAATGAGGA AGACAATAAGGGTTAGGGGGTCAGAAAGAGGTTAAAGCTTTCACTTTGGT TTAAAAGTAcatgctttttataagaatatagtCTATAAGAATGttaatga tgaaattggccacaaaaatctgaaatatggtaagaatatcgtCATCATGG AACTTGGCAACAGAACCTATGAATGTTATTTTCAAAGCATTTTAGCTGTA AATtgtcattttatgctttagttattatgtattacatgttaaattTAGGT AGACTTTGGATTCTAGCCCAAGAACaccataagaatattttagaatgatt ttctccaaaaagctaagaatatccaggataaaatagaaaaacaccatttc tattgaaaaagtGTGTATtagattttcttgattttcacgTCACCTTTGGT ATGTTTTGTTGTTGGTAATAACGATTTGCTtatattttctcaaaattatt TCCTTATAAGAAAGACGAAGCTTTCTCAATTGTTGctcaatttaaaataa attcgTAAACCtgataaaaataacattttatacTATCTTAAATGTAGAAT CTTTTTTTCTAATCTGATTTCCTCAAAAAGGCAGTATGGAAGTATATAAT TTTAAGCGTTTAAGAATTTCAAAAGGGAATATTTTGTAACAAGTAGTAAA ATTCATTTATCAATTTATAGAATATTACGATGACGAGATATAATATACat ataacaaattatttttaggagtttttctaattttttttctaaatttgtac TGCATTTGTATCTTTTATATAATGGGTAATTATTTGTAGTTTGTAGTTAg gtaatattttgatattttcgtaaCAATCAATTTTGAGTGCAGAAGCGATT AATTTTAGTGGATTCATTTTCGCGGGAAAATCTTTCACAAGATTTAATAA TCAATTTTAATATGAGAATTCTATAAAATCCCAATCACGTAGCTTGGAGC TTGTGCATCGTTTTTTATGCATCCAGTGTTTATTTTACTTCTTTATTCGC CAAATTGAATTCTTCTCTAACAAAGGCAGTGCCGTAACCACtgggcaaaa atatttttgggcacTTCTAACTGCAGACCGTTTTGTTAGTACTTGTTGTA ATCTATATAGAGCTCAAAAAGTCTTTAGATGGAAAATATACCTgatattt tgtatcatttcagATTTCTTGTCGTTCGAAATTGACGTTTAGTGAGGATT TTTCAGCCAATCTAGATGGTATAAGATCCAAAAAAACTTTCTGGTTCGTT TGAGACCTCCCTTATATACTAAAAATGTGCCCTCCCCCCCCAAAGCAATT TTTGTGTTTACGGCCCTGAACCATCTAAATGTATTTACGTATGAACACTT CGACATAGCTTGGTGTGTATccataatttatttttgtaagCCTTGTagta tttttgtagattttgtagtatttttgtagattttgtagTATTTGAACGGT TCGTAATCATTTTAGTGTTCATTTTTGTCAGGGGAAGAAAAAAGATGATA ACATGAAACATGCTGTAGTGATGCATGaacaaaaattaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010330XLOC_010330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018413-exon-sc0000300-1491911889:56587..56975TCONS_00018413-exon-sc0000300-1491911889:56587..56975Clytia hemisphaericaexon
TCONS_00018413-exon-sc0000300-1510915933:56587..56975TCONS_00018413-exon-sc0000300-1510915933:56587..56975Clytia hemisphaericaexon
TCONS_00018413-exon-sc0000300-1575043694:56587..56975TCONS_00018413-exon-sc0000300-1575043694:56587..56975Clytia hemisphaericaexon
TCONS_00018413-exon-sc0000300-1491911889:61729..64027TCONS_00018413-exon-sc0000300-1491911889:61729..64027Clytia hemisphaericaexon
TCONS_00018413-exon-sc0000300-1510915933:61729..64027TCONS_00018413-exon-sc0000300-1510915933:61729..64027Clytia hemisphaericaexon
TCONS_00018413-exon-sc0000300-1575043694:61729..64027TCONS_00018413-exon-sc0000300-1575043694:61729..64027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:56587..64027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52427 1.54296 0.763309 0.530395 42.5453 31.292 20.2635 23.5421 15.4384 16.4428 7.66602 6.81751 4.2007 3.39279 1.87991 1.6044 8.01113 5.6779 3.06692 4.5136 8.05659 7.78037 4.3623 6.21003 7.4471 10.1173 18.6639 15.444 3.59755 2.86323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top