TCONS_00018373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018373
Unique NameTCONS_00018373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018373 ID=TCONS_00018373|Name=TCONS_00018373|organism=Clytia hemisphaerica|type=transcript|length=1673bp
aGGCCTTCTTTTCCCgattttctaaatattttgttCCGATTTTGAATTCG
ACCAATCAGATTTGAGTATTCCATTCCCAAATATCCCCGATATTTTGTAA
GGACTTGGCGCTAGTTTACACATCCTCGCAATTTTTGTCTTTCGTATCGC
CcctcaaaaaatggcgactgACAGACTAGGAAACTACATAGATCCCAGAA
TGTATTCCACTGGGATAACAGGAGATTTACTCTTCAGAGGTCCAGGTTTA
TTCCAAAATGTCCAGTTCATTCCAGAGCGCATCACGCAGTTTTCAATCTC
AccggaTGGGATTCGTTATTACAAAGTAGCATGGCAAGAAGCATGGTTAC
CTGAACACCAGCTTATCCAACACCAAACACTGATCGAAGCATACTGGCGC
ACACAGAATGATCTAACAAATGCAAACAATGCAGGGGAGAGCTCACAGAC
AATCACCTCAAATGCAAATAAGGTTCAGATTGCTGTTTCCAACATCTCCA
AATCAACCAATGCCCCCTTCTACGGCAATCTGAACTTGACAGAACTGACA
GCAGCTGCCACAACCAATGCCAGCAATGCAGGCGATTCACCAGAAACACA
ATCTACACCTGCTACAATCAAAATAAAGGCCAAAAATACAACATCTTCTG
CTAAAACACCGACAGGCTCTATCGTAGAAGCAACGGATGAAAGCGCAGTA
ACAGCTGCAGCACACACTATATTAGCACAAGTGATGAAGGATAGTGAAGT
GGAGAAAGCAGTCGAAGGTGAGGAGGGACAAGATGAGAACACTTACATCG
AAATCCCTTTGAATGTCGTTCTTGAAGCCACCATTGAAGCCGAAAACGCC
GCTACAAACGAAAGCACGCCCAAAGTTGAACTAAAACCACATCAGGCGGC
CTGGCGAAAGAAAGCCAACAGTTCTTCATTACAATTGGATGGTTTTGATT
TGGTAAACATTGAAAACTCCAACGCTAGCATGGAAGAATTGGAAGCAAAC
GCACGTGAAACGTTGAGCTCGTTCCGTCGTAAAAGAGTTCGCTTCCCTAA
CGGAACATCCAAACTTCCACAAGAATGTTTCTTCTGTTTGAAGAAGTTGT
CTAACCGAAAGAAGCTTCGTGAACATCAGTTCAGTGTTCATTTCAAAAAC
GTTGGTGAATTTATGTGTGgaatttgtaaacaaagatttgtgtTCGGGCG
TCAGTTGAAAGCGCACATGTTGGTTCACTCAGATAACCGCAACTATCAAT
GTCAGTATTGTGGCCTGACTTGTAAACGACGCTCACATCTTCACAAACAT
GTTCAAACACACAACCAAGAGCGAAACTATCGTTGTGATGTGTGCCATAC
GAACTTCAAAGTACAAGCAGAACTGAAAGATCATTGTATGTCTGATCACA
AAAATCAGACCAATCAGTGTAACGTTTGTAAACAAACCCTACACACCCCA
TTCTCTGTTTACATCCACAGCATGCGTCATTCGGGAACACGTGATCACAT
CTGCGAAACGTGTGGCGCATCCTTCAAACGCAAACAACATCTCATCGCCC
ACCGAAACACACATGCAGAACTACGCGAGAAAATAAAATGTCCGGCCTGC
GATAAGGAAGTTCCGGATCGGAAGTATCTCAGAAGACATATGGAACAGAT
GCACAAAGAATTGGCAGCAGANN
Run BLAST on NCBI

protein sequence of TCONS_00018373-protein

>TCONS_00018373-protein ID=TCONS_00018373-protein|Name=TCONS_00018373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MATDRLGNYIDPRMYSTGITGDLLFRGPGLFQNVQFIPERITQFSISPDG
IRYYKVAWQEAWLPEHQLIQHQTLIEAYWRTQNDLTNANNAGESSQTITS
NANKVQIAVSNISKSTNAPFYGNLNLTELTAAATTNASNAGDSPETQSTP
ATIKIKAKNTTSSAKTPTGSIVEATDESAVTAAAHTILAQVMKDSEVEKA
VEGEEGQDENTYIEIPLNVVLEATIEAENAATNESTPKVELKPHQAAWRK
KANSSSLQLDGFDLVNIENSNASMEELEANARETLSSFRRKRVRFPNGTS
KLPQECFFCLKKLSNRKKLREHQFSVHFKNVGEFMCGICKQRFVFGRQLK
AHMLVHSDNRNYQCQYCGLTCKRRSHLHKHVQTHNQERNYRCDVCHTNFK
VQAELKDHCMSDHKNQTNQCNVCKQTLHTPFSVYIHSMRHSGTRDHICET
CGASFKRKQHLIAHRNTHAELREKIKCPACDKEVPDRKYLRRHMEQMHKE
LAAX
Run BLAST on NCBI

transcript from alignment at sc0000297:166447..172421+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018373 ID=TCONS_00018373|Name=TCONS_00018373|organism=Clytia hemisphaerica|type=transcript|length=5975bp|location=Sequence derived from alignment at sc0000297:166447..172421+ (Clytia hemisphaerica)
aGGCCTTCTTTTCCCgattttctaaatattttgttCCGATTTTGAATTCG
ACCAATCAGATTTGAGTATTCCATTCCCAAATATCCCCGATATTTTGTAA
GGACTTGGCGCTAGTTTACACATCCTCGCAATTTTTGTCTTTCGTATCGC
CcctcaaaaaatggcgactgACAGACTAGGAAACTACATAGATCCCAGAA
TGTATTCCACTGGGATAACAGGAGATTTACTCTTCAGAGGTCCAGGTTTA
TTCCAAAATGTCCAGTTCATTCCAGAGCGCATCACGCAGTTTTCAATCTC
AccggtaatttttttcatttctcggAAATTTAATAACAACCATAAGGTAC
ATTTTACACTAGGTccttgtttaaatttttactgaaatgtaaacaaaatg
atTGACAAAAAGCTGTTGCATCCTAAAGTCATGAGAATCATACCATGATT
GATACTGCCTACATCTTATATCAGGAAATGTACCATGTAAAGTAGGTTTC
TTTcatcattttaaagcttttccaTAGATTTTTGGATTAAAAATTTGTCC
TTTTAATATCTGGATAGCAAAAGGTTGGTGCTGGTGGATTCGGTTAGTCC
CATTCCCAAAATACCTAGGCGCTCTAGGCTAAAAAGGTAATTCCTGATAT
GGCCCTCCCCCAACTTAGGACTACCAGTCCTTCTAATCTAATAACATGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaagatcagttcattatgagtgcacacagCTACCTTtgtatcaactac
aaatattcgtgacatcctataacgatcattacttatgttcaaactgcgtC
CGATTAACGAAgaacctaagaaataaagtggggaaaaacactcaacatat
gatgcaaagtgaacttaaaaagaaagacgacgtcatacaaaaacttTTTC
GTAGGACAATTGAATGGTCTACTTtgtcaaaagcctttgaaaaatctagg
tACACAACATCCGCATTAGCATCTTTGTCCAATATATTTAGTATCAGGTC
AtagttttcggcaattattgccgtttttggaaagAGAGTTAAAATTGTTA
TTGAGCACATAGTatcgggtgcgccacaaaaaagtttccctcttaaaaac
aaattttctcgaaatctagaaattttaaaagaaccatatATACGTACCTA
TTCCATTGGAGAGAacaaagataaacttaaattttgatgagtcattgttt
aaattcagttcattagatcaaaagttatggtcaattgaataaaataataa
ctttctgaaagtggtcaaaagtgtaaaaaatcaacctttcaaattaaaca
gaagcatataATTGCATGATGCATctttattttcgtttcagtcattaaaa
attataattagctgtctaaatgacctctTGTCATATAAAAGAAGgatgaa
tttcaataaaaggaagaaaatttgttgaaaaaagccaaaaaaaaatttta
attgactttaaggttgttttttaaaattgaggATTGTGATCAATTCCGGC
TgtggaattttctaaaaatcaccaTGGAAATCCAgttttttgtgctcttt
ccaaTGGTATAGACGAGAGAGTGCCCTTTTTCCTAGTTTGGGAAATATTC
CCACTACTTCCTAAATAGGAAGTatcaaacaatagaaattttgaATTCTT
ACTTGAACAAGGTATACGccttgtttaaggtattacTCCTGACTGGTTTT
GGGAGCGGTaaggattttcagattttttgaaaaggtgggggttgggttAG
TGAGAAATTTCAGGAGAGATGTTTCCCAGTATGACAGTTATTGCATTATA
AAAAATGGCAGATTGACTAGGAAAAGGTCTGTAACACAAATTATGCATAA
TGAGCCTTAATGTTTTTTATGCTAAAgtatttaattattcaacaatgTAA
GTTGGTCTAACCTTTTgatttcatatttatttttcaaaatatatataaca
ctcaATCAATGACTCTGACCTTCATTATTCCATCAAAATTTGTGTTGTTG
AAGAGTGTTGATAACATCAGAtattttttgtccttttgtATCGGTGTGGC
AACTTTTCTTTCTCCAGTTGAGATAAAAACACACTTTTTCGTCTTAGCAG
TAAGagggtttttttttcagttaaataaccTAGATTTTTGTCAATATTCA
CAAAACCTGTGGTATCAGTGTATTTTTTCAGCCGAATAGAAATTGGAATG
ATATAGGGTGTAATAGGAACCTCCTTATTTAGGAGTTTATTAAATAATTG
GTCGTTGGTAATGCTATTATTTCTGACTCGCCAGGTGAAGGTGTCTAGAA
AACCAAAACCatagtttagaaaaaaagaataaattgCTAGAGTAATGCAT
tgtgaaaatcacaaaaaaaaaacgaaaaataaaacttagGCAGAATCCCT
CATTTGTTTACTCTAGGGGTCAGAAAACTAGTATCTGTAAACATTTTTCA
TGAATGTTACCCTGGGTTCTTTGTGCTGATGCAATTGAACAATCTTAAAC
CTGACTCATCTTAGAAAAATAACGTAGTGAATATTAAGTCCTCAAAATCA
TTCTTGATTAAAAACCCTTTATTATCCTTTATTGGTTTTCATAAAATTAT
AGTAAAAGTTTGACaagcttgaaaaatattttgtattttatattttcagg
aTGGGATTCGTTATTACAAAGTAGCATGGCAAGAAGCATGGTTACCTGAA
CACCAGCTTATCCAACACCAAACACTGATCGAAGCATACTGGCGCACACA
GAATGATCTAACAAATGCAAACAATGCAGGGGAGAGCTCACATACAATCA
CCTCAAATGCAAATAAGGTTCAGATTGCTGTTTCCANAGAGAGCTCACAG
ACAATCACCTCAAATGCAAATAAGGTTCAGATTGCTGTTTCCAACATCTC
CAAATCAACCAATGCCCCCTTCTACGGCAATCTGAACTTGACAGAACTGA
CAGCAGCTGCCACAACCAATGCCAGCAATGCAGGCGATTCACCAGAAACA
CAATCTACACCTGCTACAATCAAAATAAAGGCCAAAAATACAACATCTTC
TGCTAAAACACCGACAGGCTCTATCGTAGAAGCAACGGATGAAAGCGCAG
TAACAGCTGCAGCACACACTATATTAGCACAAGTGATGAAGGATAGTGAA
GTGGAGAAAGCAGTCGAAGGTGAGGAGGGACAAGATGAGAACACTTACAT
CGAAATCCCTTTGAATGTCGTTCTTGAAGCCACCATTGAAGCCGAAAACG
CCGCTACAAACGAAAGCACGCCCAAAGTTGAACTAAAACCACATCAGGCG
GCCTGGCGAAAGAAAGCCAACAGTTCTTCATTACAATTGGATGGTTTTGA
TTTGGTAAACATTGAAAACTCCAACGCTAGCATGGAAGAATTGGAAGCAA
ACGCACGTGAAACGTTGAGCTCGTTCCGTCGTAAAAGAGTTCGCTTCCCT
AACGGAACATCCAAACTTCCACAAGAATGTTTCTTCTGTTTGAAGAAGTT
GTCTAACCGAAAGAAGCTTCGTGAACATCAGTTCAGTGTTCATTTCAAAA
ACGTTGGTGAATTTATGTGTGgaatttgtaaacaaagatttgtgtTCGGG
CGTCAGTTGAAAGCGCACATGTTGGTTCACTCAGATAACCGCAACTATCA
ATGTCAGTATTGTGGCCTGACTTGTAAACGACGCTCACATCTTCACAAAC
ATGTTCAAACACACAACCAAGAGCGAAACTATCGTTGTGATGTGTGCCAT
ACGAACTTCAAAGTACAAGCAGAACTGAAAGATCATTGTATGTCTGATCA
CAAAAATCAGACCAATCAGTGTAACGTTTGTAAACAAACCCTACACACCC
CATTCTCTGTTTACATCCACAGCATGCGTCATTCGGGAACACGTGATCAC
ATCTGCGAAACGTGTGGCGCATCCTTCAAACGCAAACAACATCTCATCGC
CCACCGAAACACACATGCAGAACTACGCGAGAAAATAAAATGTCCGGCCT
GCGATAAGGAAGTTCCGGATCGGAAGTATCTCAGAAGACATATGGAACAG
ATGCACAAAGAATTGGCAGCAGANN

Coding sequence (CDS) from alignment at sc0000297:166447..172421+

>TCONS_00018373 ID=TCONS_00018373|Name=TCONS_00018373|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000297:166447..172421+ (Clytia hemisphaerica)
atggcgactgACAGACTAGGAAACTACATAGATCCCAGAATGTATTCCAC
TGGGATAACAGGAGATTTACTCTTCAGAGGTCCAGGTTTATTCCAAAATG
TCCAGTTCATTCCAGAGCGCATCACGCAGTTTTCAATCTCAccggaTGGG
ATTCGTTATTACAAAGTAGCATGGCAAGAAGCATGGTTACCTGAACACCA
GCTTATCCAACACCAAACACTGATCGAAGCATACTGGCGCACACAGAATG
ATCTAACAAATGCAAACAATGCAGGGGAGAGCTCACAGACAATCACCTCA
AATGCAAATAAGGTTCAGATTGCTGTTTCCAACATCTCCAAATCAACCAA
TGCCCCCTTCTACGGCAATCTGAACTTGACAGAACTGACAGCAGCTGCCA
CAACCAATGCCAGCAATGCAGGCGATTCACCAGAAACACAATCTACACCT
GCTACAATCAAAATAAAGGCCAAAAATACAACATCTTCTGCTAAAACACC
GACAGGCTCTATCGTAGAAGCAACGGATGAAAGCGCAGTAACAGCTGCAG
CACACACTATATTAGCACAAGTGATGAAGGATAGTGAAGTGGAGAAAGCA
GTCGAAGGTGAGGAGGGACAAGATGAGAACACTTACATCGAAATCCCTTT
GAATGTCGTTCTTGAAGCCACCATTGAAGCCGAAAACGCCGCTACAAACG
AAAGCACGCCCAAAGTTGAACTAAAACCACATCAGGCGGCCTGGCGAAAG
AAAGCCAACAGTTCTTCATTACAATTGGATGGTTTTGATTTGGTAAACAT
TGAAAACTCCAACGCTAGCATGGAAGAATTGGAAGCAAACGCACGTGAAA
CGTTGAGCTCGTTCCGTCGTAAAAGAGTTCGCTTCCCTAACGGAACATCC
AAACTTCCACAAGAATGTTTCTTCTGTTTGAAGAAGTTGTCTAACCGAAA
GAAGCTTCGTGAACATCAGTTCAGTGTTCATTTCAAAAACGTTGGTGAAT
TTATGTGTGgaatttgtaaacaaagatttgtgtTCGGGCGTCAGTTGAAA
GCGCACATGTTGGTTCACTCAGATAACCGCAACTATCAATGTCAGTATTG
TGGCCTGACTTGTAAACGACGCTCACATCTTCACAAACATGTTCAAACAC
ACAACCAAGAGCGAAACTATCGTTGTGATGTGTGCCATACGAACTTCAAA
GTACAAGCAGAACTGAAAGATCATTGTATGTCTGATCACAAAAATCAGAC
CAATCAGTGTAACGTTTGTAAACAAACCCTACACACCCCATTCTCTGTTT
ACATCCACAGCATGCGTCATTCGGGAACACGTGATCACATCTGCGAAACG
TGTGGCGCATCCTTCAAACGCAAACAACATCTCATCGCCCACCGAAACAC
ACATGCAGAACTACGCGAGAAAATAAAATGTCCGGCCTGCGATAAGGAAG
TTCCGGATCGGAAGTATCTCAGAAGACATATGGAACAGATGCACAAAGAA
TTGGCAGCAGANatggcgactgACAGACTAGGAAACTACATAGATCCCAG
AATGTATTCCACTGGGATAACAGGAGATTTACTCTTCAGAGGTCCAGGTT
TATTCCAAAATGTCCAGTTCATTCCAGAGCGCATCACGCAGTTTTCAATC
TCAccggaTGGGATTCGTTATTACAAAGTAGCATGGCAAGAAGCATGGTT
ACCTGAACACCAGCTTATCCAACACCAAACACTGATCGAAGCATACTGGC
GCACACAGAATGATCTAACAAATGCAAACAATGCAGGGGAGAGCTCACAG
ACAATCACCTCAAATGCAAATAAGGTTCAGATTGCTGTTTCCAACATCTC
CAAATCAACCAATGCCCCCTTCTACGGCAATCTGAACTTGACAGAACTGA
CAGCAGCTGCCACAACCAATGCCAGCAATGCAGGCGATTCACCAGAAACA
CAATCTACACCTGCTACAATCAAAATAAAGGCCAAAAATACAACATCTTC
TGCTAAAACACCGACAGGCTCTATCGTAGAAGCAACGGATGAAAGCGCAG
TAACAGCTGCAGCACACACTATATTAGCACAAGTGATGAAGGATAGTGAA
GTGGAGAAAGCAGTCGAAGGTGAGGAGGGACAAGATGAGAACACTTACAT
CGAAATCCCTTTGAATGTCGTTCTTGAAGCCACCATTGAAGCCGAAAACG
CCGCTACAAACGAAAGCACGCCCAAAGTTGAACTAAAACCACATCAGGCG
GCCTGGCGAAAGAAAGCCAACAGTTCTTCATTACAATTGGATGGTTTTGA
TTTGGTAAACATTGAAAACTCCAACGCTAGCATGGAAGAATTGGAAGCAA
ACGCACGTGAAACGTTGAGCTCGTTCCGTCGTAAAAGAGTTCGCTTCCCT
AACGGAACATCCAAACTTCCACAAGAATGTTTCTTCTGTTTGAAGAAGTT
GTCTAACCGAAAGAAGCTTCGTGAACATCAGTTCAGTGTTCATTTCAAAA
ACGTTGGTGAATTTATGTGTGgaatttgtaaacaaagatttgtgtTCGGG
CGTCAGTTGAAAGCGCACATGTTGGTTCACTCAGATAACCGCAACTATCA
ATGTCAGTATTGTGGCCTGACTTGTAAACGACGCTCACATCTTCACAAAC
ATGTTCAAACACACAACCAAGAGCGAAACTATCGTTGTGATGTGTGCCAT
ACGAACTTCAAAGTACAAGCAGAACTGAAAGATCATTGTATGTCTGATCA
CAAAAATCAGACCAATCAGTGTAACGTTTGTAAACAAACCCTACACACCC
CATTCTCTGTTTACATCCACAGCATGCGTCATTCGGGAACACGTGATCAC
ATCTGCGAAACGTGTGGCGCATCCTTCAAACGCAAACAACATCTCATCGC
CCACCGAAACACACATGCAGAACTACGCGAGAAAATAAAATGTCCGGCCT
GCGATAAGGAAGTTCCGGATCGGAAGTATCTCAGAAGACATATGGAACAG
ATGCACAAAGAATTGGCAGCAGANatggcgactgACAGACTAGGAAACTA
CATAGATCCCAGAATGTATTCCACTGGGATAACAGGAGATTTACTCTTCA
GAGGTCCAGGTTTATTCCAAAATGTCCAGTTCATTCCAGAGCGCATCACG
CAGTTTTCAATCTCAccggaTGGGATTCGTTATTACAAAGTAGCATGGCA
AGAAGCATGGTTACCTGAACACCAGCTTATCCAACACCAAACACTGATCG
AAGCATACTGGCGCACACAGAATGATCTAACAAATGCAAACAATGCAGGG
GAGAGCTCACAGACAATCACCTCAAATGCAAATAAGGTTCAGATTGCTGT
TTCCAACATCTCCAAATCAACCAATGCCCCCTTCTACGGCAATCTGAACT
TGACAGAACTGACAGCAGCTGCCACAACCAATGCCAGCAATGCAGGCGAT
TCACCAGAAACACAATCTACACCTGCTACAATCAAAATAAAGGCCAAAAA
TACAACATCTTCTGCTAAAACACCGACAGGCTCTATCGTAGAAGCAACGG
ATGAAAGCGCAGTAACAGCTGCAGCACACACTATATTAGCACAAGTGATG
AAGGATAGTGAAGTGGAGAAAGCAGTCGAAGGTGAGGAGGGACAAGATGA
GAACACTTACATCGAAATCCCTTTGAATGTCGTTCTTGAAGCCACCATTG
AAGCCGAAAACGCCGCTACAAACGAAAGCACGCCCAAAGTTGAACTAAAA
CCACATCAGGCGGCCTGGCGAAAGAAAGCCAACAGTTCTTCATTACAATT
GGATGGTTTTGATTTGGTAAACATTGAAAACTCCAACGCTAGCATGGAAG
AATTGGAAGCAAACGCACGTGAAACGTTGAGCTCGTTCCGTCGTAAAAGA
GTTCGCTTCCCTAACGGAACATCCAAACTTCCACAAGAATGTTTCTTCTG
TTTGAAGAAGTTGTCTAACCGAAAGAAGCTTCGTGAACATCAGTTCAGTG
TTCATTTCAAAAACGTTGGTGAATTTATGTGTGgaatttgtaaacaaaga
tttgtgtTCGGGCGTCAGTTGAAAGCGCACATGTTGGTTCACTCAGATAA
CCGCAACTATCAATGTCAGTATTGTGGCCTGACTTGTAAACGACGCTCAC
ATCTTCACAAACATGTTCAAACACACAACCAAGAGCGAAACTATCGTTGT
GATGTGTGCCATACGAACTTCAAAGTACAAGCAGAACTGAAAGATCATTG
TATGTCTGATCACAAAAATCAGACCAATCAGTGTAACGTTTGTAAACAAA
CCCTACACACCCCATTCTCTGTTTACATCCACAGCATGCGTCATTCGGGA
ACACGTGATCACATCTGCGAAACGTGTGGCGCATCCTTCAAACGCAAACA
ACATCTCATCGCCCACCGAAACACACATGCAGAACTACGCGAGAAAATAA
AATGTCCGGCCTGCGATAAGGAAGTTCCGGATCGGAAGTATCTCAGAAGA
CATATGGAACAGATGCACAAAGAATTGGCAGCAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010302XLOC_010302Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018373-proteinTCONS_00018373-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018373-exon-sc0000297-1491911889:166447..166750TCONS_00018373-exon-sc0000297-1491911889:166447..166750Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1510915933:166447..166750TCONS_00018373-exon-sc0000297-1510915933:166447..166750Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1575043694:166447..166750TCONS_00018373-exon-sc0000297-1575043694:166447..166750Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1491911889:170996..171137TCONS_00018373-exon-sc0000297-1491911889:170996..171137Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1510915933:170996..171137TCONS_00018373-exon-sc0000297-1510915933:170996..171137Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1575043694:170996..171137TCONS_00018373-exon-sc0000297-1575043694:170996..171137Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1491911889:171195..172421TCONS_00018373-exon-sc0000297-1491911889:171195..172421Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1510915933:171195..172421TCONS_00018373-exon-sc0000297-1510915933:171195..172421Clytia hemisphaericaexon
TCONS_00018373-exon-sc0000297-1575043694:171195..172421TCONS_00018373-exon-sc0000297-1575043694:171195..172421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000297supercontigsc0000297:166447..172421 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1681	11.8321	10.5092	8.55485	22.2893	20.0045	13.3565	14.4134	5.5042	7.24565	6.90509	6.78916	7.71625	13.7391	6.13967	9.21198	9.09949	9.11282	5.13223	6.13493	9.2318	5.79046	12.5657	9.66717	18.4001	18.7906	3.45819	3.67487	8.85957	9.58377
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00018373 vs. Swiss-Prot (Human)
Match: ZBT41 (Zinc finger and BTB domain-containing protein 41 OS=Homo sapiens GN=ZBTB41 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.127e-22
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2 
Query: 1076 CFFCLKKLSNRKKLREHQFSVHFKNVGE--FMCGICKQRFVFGRQLKAHMLVHSDNRNYQCQYCGLTCKRRSHLHKHVQTHNQERNYRCDVCHTNFKVQAELKDHCMSDH---------KNQTNQCNVCKQTLHTPFSVYIHSMRHSGTRDHICETCGASFKRKQHLIAHRNTHAELREKIKCPACDKEVPDRKYLRRHMEQMHK 1657
            CF C K +  R  L+EH   +H    GE   +C IC Q F  G   + H+ VH D++ Y+C  CG T  R  HL KH + H+ E+ ++C+ C   F  +  L  H  S H         K   +QC+VCK+      S+ +H   HSG + + C+ C  SF+ K+ L  H   H++ R    C  C+     +  L+ H++ +H+
Sbjct:  549 CFICGKSVRERTTLKEH-LRIH---SGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHKKIHSGEKAHQCEECGKCFGRRDHLTVHYKSVHLGEKVWQKYKATFHQCDVCKKIFKGKSSLEMHFRTHSGEKPYKCQICNQSFRIKKTLTKHLVIHSDAR-PFNCQHCNATFKRKDKLKYHIDHVHE 748

HSP 2 Score: 85.5001 bits (210), Expect = 2.518e-17
Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 2 
Query: 1067 PQECFFCLKKLSNRKKLREHQFSVHFKNVGEFMCGICKQRFVFGRQLKAHM-LVHSDNRNYQCQYCGLTCKRRSHLHKHVQTHNQERNYRCDVCHTNFKVQAELKDHCMSDHKNQTNQCNVCKQTLHTPFSVYIHSMRHSGTRDHICETCGASFKRKQHLIAHRNTHAELREKI---------KCPACDKEVPDRKYLRRHM 1642
            P +C +C +   +R    +HQ   H   +G F C IC ++F     LK H+   H   R + C  CG + + R+ L +H++ H+ E+ + C +C  +F+  +  + H    H ++  +C+ C +T      +  H   HSG + H CE CG  F R+ HL  H  +   L EK+         +C  C K    +  L  H 
Sbjct:  490 PFKCTYCEEHFKSRFARLKHQEKFH---LGPFPCDICGRQFNDTGNLKRHIECTHGGKRKWTCFICGKSVRERTTLKEHLRIHSGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHKKIHSGEKAHQCEECGKCFGRRDHLTVHYKS-VHLGEKVWQKYKATFHQCDVCKKIFKGKSSLEMHF 687
The following BLAST results are available for this feature:
BLAST of TCONS_00018373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZBT413.127e-2231.71Zinc finger and BTB domain-containing protein 41 O... [more]
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