TCONS_00018328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018328
Unique NameTCONS_00018328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018328 ID=TCONS_00018328|Name=TCONS_00018328|organism=Clytia hemisphaerica|type=transcript|length=381bp
AAAAGACCTCCCTAAGGAACAACCACCGGCAGCGGACCCATCAACTCCAT
CTAGACGGATCAAACCATTGACCGAGACACCACCGTCTGCCATGAGAGAC
ATCAAACTTCAACTCAATCAAGTATACATACTACAATCTGATATTGAACT
TTGTTTGGATGAGGTAACAGACTTAATTGATGAACACTCAATCCACAATG
CTTCAATCAAAGACACTGAAAGTATCCTCACTGAACTGAAAGAGCTACGA
AAGGGACTCCGTGCGAATGTCAAAACTTTCTCGAAATTAGCTCCCGACGA
GTATAAATCAATTCAGCCGAGTATCCAAAATGTATTCGATCTCATCAAAG
ACTTCATTGTAGCAGCGAAAAGTCACATCGA
Run BLAST on NCBI

protein sequence of TCONS_00018328-protein

>TCONS_00018328-protein ID=TCONS_00018328-protein|Name=TCONS_00018328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KDLPKEQPPAADPSTPSRRIKPLTETPPSAMRDIKLQLNQVYILQSDIEL
CLDEVTDLIDEHSIHNASIKDTESILTELKELRKGLRANVKTFSKLAPDE
YKSIQPSIQNVFDLIKDFIVAAKSHI
Run BLAST on NCBI

transcript from alignment at sc0000295:340743..341123

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018328 ID=TCONS_00018328|Name=TCONS_00018328|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000295:340743..341123 (Clytia hemisphaerica)
TCGATGTGACTTTTCGCTGCTACAATGAAGTCTTTGATGAGATCGAATAC
ATTTTGGATACTCGGCTGAATTGATTTATACTCGTCGGGAGCTAATTTCG
AGAAAGTTTTGACATTCGCACGGAGTCCCTTTCGTAGCTCTTTCAGTTCA
GTGAGGATACTTTCAGTGTCTTTGATTGAAGCATTGTGGATTGAGTGTTC
ATCAATTAAGTCTGTTACCTCATCCAAACAAAGTTCAATATCAGATTGTA
GTATGTATACTTGATTGAGTTGAAGTTTGATGTCTCTCATGGCAGACGGT
GGTGTCTCGGTCAATGGTTTGATCCGTCTAGATGGAGTTGATGGGTCCGC
TGCCGGTGGTTGTTCCTTAGGGAGGTCTTTT

Coding sequence (CDS) from alignment at sc0000295:340743..341123

>TCONS_00018328 ID=TCONS_00018328|Name=TCONS_00018328|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000295:340743..341123 (Clytia hemisphaerica)
GATGTGACTTTTCGCTGCTACAATGAAGTCTTTGATGAGATCGAATACAT
TTTGGATACTCGGCTGAATTGATTTATACTCGTCGGGAGCTAATTTCGAG
AAAGTTTTGACATTCGCACGGAGTCCCTTTCGTAGCTCTTTCAGTTCAGT
GAGGATACTTTCAGTGTCTTTGATTGAAGCATTGTGGATTGAGTGTTCAT
CAATTAAGTCTGTTACCTCATCCAAACAAAGTTCAATATCAGATTGTAGT
ATGTATACTTGATTGAGTTGAAGTTTGATGTCTCTCATGGCAGACGGTGG
TGTCTCGGTCAATGGTTTGATCCGTCTAGATGGAGTTGATGGGTCCGCTG
CCGGTGGTTGTTCCTTAGGGAGGTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010294XLOC_010294Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018328-proteinTCONS_00018328-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018328-exon-sc0000295-1491911889:340743..341123TCONS_00018328-exon-sc0000295-1491911889:340743..341123Clytia hemisphaericaexon
TCONS_00018328-exon-sc0000295-1510915933:340743..341123TCONS_00018328-exon-sc0000295-1510915933:340743..341123Clytia hemisphaericaexon
TCONS_00018328-exon-sc0000295-1575043694:340743..341123TCONS_00018328-exon-sc0000295-1575043694:340743..341123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:340743..341123 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35137	1.3474	0.663257	0.913949	1.66897	0.439613	0.641158	1.62378	0.521449	0	0.944057	1.01901	0.621	0.977291	0.351374	0.423026	0	1.09779	0.438531	1.52258	1.50314	1.63154	0.2365	1.2303	1.77167	0.988233	1.41416	0.409867	0.304929	0.877184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top