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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018310 ID=TCONS_00018310|Name=TCONS_00018310|organism=Clytia hemisphaerica|type=transcript|length=1441bp TCAAACTAATAGCTTTTAATccccttttttgttgttttgctaTCATTAAG TATTTGTTTACCTTCAGATAAAAGTGGAGTAAAAAAACCGTTTGAGTTGC ATGTGCAAAATCTTATATTTTTCAGACTAGGATAGAAAATAACCATCATG TTAACAGAAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTCAA TATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTTGA CTTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAACG TTATTTGCATTGAAATGGAAGGAACACAAGgtTGTCACAGACGTGGACTA CATTAAATCTTGGGGTAAAGTTTACATGGCTTTCGAGGACATTGAGATCT TTTGGAAGAAGAACAGCGGTAAACGATTGGTTAAGAAGAAATTGGTCGGC CACTCAGGAACTGTTGATGCTTTGCATATCATGCCCTCTAGAAAGATTTA TATCTCAGGTGGCCGTGATAGAAATGCAATGGTATGGCGATCAAAGCATG ATGGATATGAAGGGCAAGAGCTTCTTGAAGTACTTCAACATAAGGGTTGG GTGTGGGGTATTTGTAGTGATGAGAATAAAGACTCTGAATTCATTACCAC CTCATTCGCTCCTGAAGTCAATGTGTGGAACATAGAAAGACTGGATCTTG TAAACACCTTTGATTATCATCCTGGTGCGGTGTTATCTTTATGTTGTCAG GATCAAGTGCTAACGACGGGTTGTTTTGATAAGAAGTTACGACAGTTTGA CCTTAGATCTGGTAAATTAACGTTAGAACTGGCGCATCATAAAAAGCCAG TCGTCAGTTTATGTCTGACCGAAAACTACTTATTTTCCGGCAGTGCGGAT AAGACGATACGTATTTATGATACCCGTGTACCAGAAAAAGAGTTGACGAA ACTGATTCTTGATTCGCAAGCTTTGTGTATGAACACGGCACAAGAGCAAG GTCTTAGTTTCTTAAGAGTAGGCGGAAGCCATGGTGGTATGTTCTTTTTC GATATATCAGACGGTTGCCGATTTTCTTTGTTGAATTCGTTTGATATTTG GAATAACCATAACCAGAAAGTCACTGACATTTGTAATTTCCGTGGTTGCT TGGTAGCTTGTTCTGACGGTGGACCTGTAAGAGCATACACGCCAGGTAGA GACTGCGCATTTATCAGAAGACTTGACGATCCTTTGATGAAAGTTGGCAT GTGTAGTTGTTATTCAAGAGGTGATGTGATGCTGACTGGTGGATCTGACA GTTGCGTCACCGAATGGAGattcgaaaatgaagattgaaagaTGAGTGAG TTTTTCTGACAGCGCTTTAGGGCTCAATTTGGAGAGTAATTCTGAAAAGA CGAGAAGGAGTGAAAAATATACACTGTACGGCGAAGACGNN Run BLAST on NCBI protein sequence of TCONS_00018310-protein >TCONS_00018310-protein ID=TCONS_00018310-protein|Name=TCONS_00018310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MLTEINNIEDLPPELLLNIFRFIDVRTLFGKVVLTCKYFHDILTAEGIWQ TLFALKWKEHKVVTDVDYIKSWGKVYMAFEDIEIFWKKNSGKRLVKKKLV GHSGTVDALHIMPSRKIYISGGRDRNAMVWRSKHDGYEGQELLEVLQHKG WVWGICSDENKDSEFITTSFAPEVNVWNIERLDLVNTFDYHPGAVLSLCC QDQVLTTGCFDKKLRQFDLRSGKLTLELAHHKKPVVSLCLTENYLFSGSA DKTIRIYDTRVPEKELTKLILDSQALCMNTAQEQGLSFLRVGGSHGGMFF FDISDGCRFSLLNSFDIWNNHNQKVTDICNFRGCLVACSDGGPVRAYTPG RDCAFIRRLDDPLMKVGMCSCYSRGDVMLTGGSDSCVTEWRFENED Run BLAST on NCBI transcript from alignment at sc0000295:354862..357109- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018310 ID=TCONS_00018310|Name=TCONS_00018310|organism=Clytia hemisphaerica|type=transcript|length=2248bp|location=Sequence derived from alignment at sc0000295:354862..357109- (Clytia hemisphaerica) TCAAACTAATAGCTTTTAATCCCCTTTTTTGTTGTTTTGCTATCATTAAG
TATTTGTTTACCTTCAGATAAAAGTGGAGTAAAAAAACCGTTTGAGTTGC
ATGTGCAAAATCTTATATTTTTCAGACTAGGATAGAAAATAACCATCATG
TTAACAGAAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTCAA
TATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTTGA
CTTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAACG
TTATTTGCATTGAAATGGAAGGAACACAAGGTACTATTTTTATTATGACC
AAAAAGTAAGAAATACTGAGGAAAAAAACAGAACAGATGATTACTTTAAT
TGGTAATGGGGAGCACATATCCGTTTTCTTAATCAACTGGTTCCTTTGAT
TGACAAGTTTTAGTGCCAGGTCTTCGTTTCACTCTTCGTTTTTTACTCTT
TTCTCGCTTTCCTCAATATTGTATCAAGTCGGATACAGTCGGATATTAGA
AAATCTTAGAACAAGCCTGACAGAATAAAAATTTCACATTGGTTTAACTT
TGAATCTCAAATTGATTCAATTATTTAAACACAAGATATTCAAAATCTTT
CTTTTTTTTCTCAGGTTGTCACAGACGTGGACTACATTAAATCTTGGGGT
AAAGTTTACATGGCTTTCGAGGACATTGAGATCTTTTGGAAGAAGAACAG
CGGTAAACGATTGGTTAAGAAGAAATTGGTCGGCCACTCAGGAACTGTTG
ATGCTTTGCATATCATGCCCTCTAGAAAGATTTATATCTCAGGTACAAAG
TCTTCTTCCTTGTTTTGAGGTAAGGATCTGAAGGTGCTTGGGTTTCTTCA
TTTAAATTTACGGGGAATAGTATGTGAATGAAAGGCTGCTAGAATGAGAA
AATGTATGAGAAGTGATGAAACTATGACGAAAATTATTCCGGTATTTAAT
GTTTCTTTCAAATAGCTAAAGTATTTGATTATTAACCATTTCAAAGAATC
TTTTTTATGTCTCAACCGTCTTTATGCTCTCATCTTTAGGTGGCCGTGAT
AGAAATGCAATGGTATGGCGATCAAAGCATGATGGATATGAAGGGCAAGA
GCTTCTTGAAGTACTTCAACATAAGGTTCAATCAACTACTTCCCTCTTAT
TCGAATTTCTGTCTTCCAAATGATTCTGTAATTCGAATTAAAATGCAGAA
TGGACGTTTTAGCTTGGGAAGCCGTAAGAATCTGTAATTTAAATCTTACA
ATTCAAAAAAAAACGTTACCCCCTCCCGTCTATTAATCATGAATTATGAC
ATTTTTAAAAATATTCTTGTGTGTTCTATGTTATGATTTCTTTTCTTACA
GGGTTGGGTGTGGGGTATTTGTAGTGATGAGAATAAAGACTCTGAATTCA
TTACCACCTCATTCGCTCCTGAAGTCAATGTGTGGAACATAGAAAGACTG
GATCTTGTAAACACCTTTGATTATCATCCTGGTGCGGTGTTATCTTTATG
TTGTCAGGATCAAGTGCTAACGACGGGTTGTTTTGATAAGAAGTTACGAC
AGTTTGACCTTAGATCTGGTAAATTAACGTTAGAACTGGCGCATCATAAA
AAGCCAGTCGTCAGTTTATGTCTGACCGAAAACTACTTATTTTCCGGCAG
TGCGGATAAGACGATACGTATTTATGATACCCGTGTACCAGAAAAAGAGT
TGACGAAACTGATTCTTGATTCGCAAGCTTTGTGTATGAACACGGCACAA
GAGCAAGGTCTTAGTTTCTTAAGAGTAGGCGGAAGCCATGGTGGTATGTT
CTTTTTCGATATATCAGACGGTTGCCGATTTTCTTTGTTGAATTCGTTTG
ATATTTGGAATAACCATAACCAGAAAGTCACTGACATTTGTAATTTCCGT
GGTTGCTTGGTAGCTTGTTCTGACGGTGGACCTGTAAGAGCATACACGCC
AGGTAGAGACTGCGCATTTATCAGAAGACTTGACGATCCTTTGATGAAAG
TTGGCATGTGTAGTTGTTATTCAAGAGGTGATGTGATGCTGACTGGTGGA
TCTGACAGTTGCGTCACCGAATGGAGATTCGAAAATGAAGATTGAAAGAT
GAGTGAGTTTTTCTGACAGCGCTTTAGGGCTCAATTTGGAGAGTAATTCT
GAAAAGACGAGAAGGAGTGAAAAATATACACTGTACGGCGAAGACGNN Coding sequence (CDS) from alignment at sc0000295:354862..357109- >TCONS_00018310 ID=TCONS_00018310|Name=TCONS_00018310|organism=Clytia hemisphaerica|type=CDS|length=4764bp|location=Sequence derived from alignment at sc0000295:354862..357109- (Clytia hemisphaerica) GGTTGGGTGTGGGGTATTTGTAGTGATGAGAATAAAGACTCTGAATTCAT TACCACCTCATTCGCTCCTGAAGTCAATGTGTGGAACATAGAAAGACTGG ATCTTGTAAACACCTTTGATTATCATCCTGGTGCGGTGTTATCTTTATGT TGTCAGGATCAAGTGCTAACGACGGGTTGTTTTGATAAGAAGTTACGACA GTTTGACCTTAGATCTGGTAAATTAACGTTAGAACTGGCGCATCATAAAA AGCCAGTCGTCAGTTTATGTCTGACCGAAAACTACTTATTTTCCGGCAGT GCGGATAAGACGATACGTATTTATGATACCCGTGTACCAGAAAAAGAGTT GACGAAACTGATTCTTGATTCGCAAGCTTTGTGTATGAACACGGCACAAG AGCAAGGTCTTAGTTTCTTAAGAGTAGGCGGAAGCCATGGTGGTATGTTC TTTTTCGATATATCAGACGGTTGCCGATTTTCTTTGTTGAATTCGTTTGA TATTTGGAATAACCATAACCAGAAAGTCACTGACATTTGTAATTTCCGTG GTTGCTTGGTAGCTTGTTCTGACGGTGGACCTGTAAGAGCATACACGCCA GGTAGAGACTGCGCATTTATCAGAAGACTTGACGATCCTTTGATGAAAGT TGGCATGTGTAGTTGTTATTCAAGAGGTGATGTGATGCTGACTGGTGGAT CTGACAGTTGCGTCACCGAATGGAGATTCGAAAATGAAGATTGAGTGGCC GTGATAGAAATGCAATGGTATGGCGATCAAAGCATGATGGATATGAAGGG CAAGAGCTTCTTGAAGTACTTCAACATAAGGTTGTCACAGACGTGGACTA CATTAAATCTTGGGGTAAAGTTTACATGGCTTTCGAGGACATTGAGATCT TTTGGAAGAAGAACAGCGGTAAACGATTGGTTAAGAAGAAATTGGTCGGC CACTCAGGAACTGTTGATGCTTTGCATATCATGCCCTCTAGAAAGATTTA TATCTCAGATGTTAACAGAAATAAACAATATCGAAGACCTACCACCAGAG TTACTGCTCAATATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAA AGTTGTTTTGACTTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCA TATGGCAAACGTTATTTGCATTGAAATGGAAGGAACACAAGGGTTGGGTG TGGGGTATTTGTAGTGATGAGAATAAAGACTCTGAATTCATTACCACCTC ATTCGCTCCTGAAGTCAATGTGTGGAACATAGAAAGACTGGATCTTGTAA ACACCTTTGATTATCATCCTGGTGCGGTGTTATCTTTATGTTGTCAGGAT CAAGTGCTAACGACGGGTTGTTTTGATAAGAAGTTACGACAGTTTGACCT TAGATCTGGTAAATTAACGTTAGAACTGGCGCATCATAAAAAGCCAGTCG TCAGTTTATGTCTGACCGAAAACTACTTATTTTCCGGCAGTGCGGATAAG ACGATACGTATTTATGATACCCGTGTACCAGAAAAAGAGTTGACGAAACT GATTCTTGATTCGCAAGCTTTGTGTATGAACACGGCACAAGAGCAAGGTC TTAGTTTCTTAAGAGTAGGCGGAAGCCATGGTGGTATGTTCTTTTTCGAT ATATCAGACGGTTGCCGATTTTCTTTGTTGAATTCGTTTGATATTTGGAA TAACCATAACCAGAAAGTCACTGACATTTGTAATTTCCGTGGTTGCTTGG TAGCTTGTTCTGACGGTGGACCTGTAAGAGCATACACGCCAGGTAGAGAC TGCGCATTTATCAGAAGACTTGACGATCCTTTGATGAAAGTTGGCATGTG TAGTTGTTATTCAAGAGGTGATGTGATGCTGACTGGTGGATCTGACAGTT GCGTCACCGAATGGAGATTCGAAAATGAAGATTGAGTGGCCGTGATAGAA ATGCAATGGTATGGCGATCAAAGCATGATGGATATGAAGGGCAAGAGCTT CTTGAAGTACTTCAACATAAGGTTGTCACAGACGTGGACTACATTAAATC TTGGGGTAAAGTTTACATGGCTTTCGAGGACATTGAGATCTTTTGGAAGA AGAACAGCGGTAAACGATTGGTTAAGAAGAAATTGGTCGGCCACTCAGGA ACTGTTGATGCTTTGCATATCATGCCCTCTAGAAAGATTTATATCTCAGA TGTTAACAGAAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTC AATATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTT GACTTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAA CGTTATTTGCATTGAAATGGAAGGAACACAAGGGTTGGGTGTGGGGTATT TGTAGTGATGAGAATAAAGACTCTGAATTCATTACCACCTCATTCGCTCC TGAAGTCAATGTGTGGAACATAGAAAGACTGGATCTTGTAAACACCTTTG ATTATCATCCTGGTGCGGTGTTATCTTTATGTTGTCAGGATCAAGTGCTA ACGACGGGTTGTTTTGATAAGAAGTTACGACAGTTTGACCTTAGATCTGG TAAATTAACGTTAGAACTGGCGCATCATAAAAAGCCAGTCGTCAGTTTAT GTCTGACCGAAAACTACTTATTTTCCGGCAGTGCGGATAAGACGATACGT ATTTATGATACCCGTGTACCAGAAAAAGAGTTGACGAAACTGATTCTTGA TTCGCAAGCTTTGTGTATGAACACGGCACAAGAGCAAGGTCTTAGTTTCT TAAGAGTAGGCGGAAGCCATGGTGGTATGTTCTTTTTCGATATATCAGAC GGTTGCCGATTTTCTTTGTTGAATTCGTTTGATATTTGGAATAACCATAA CCAGAAAGTCACTGACATTTGTAATTTCCGTGGTTGCTTGGTAGCTTGTT CTGACGGTGGACCTGTAAGAGCATACACGCCAGGTAGAGACTGCGCATTT ATCAGAAGACTTGACGATCCTTTGATGAAAGTTGGCATGTGTAGTTGTTA TTCAAGAGGTGATGTGATGCTGACTGGTGGATCTGACAGTTGCGTCACCG AATGGAGATTCGAAAATGAAGATTGAGTGGCCGTGATAGAAATGCAATGG TATGGCGATCAAAGCATGATGGATATGAAGGGCAAGAGCTTCTTGAAGTA CTTCAACATAAGGTTGTCACAGACGTGGACTACATTAAATCTTGGGGTAA AGTTTACATGGCTTTCGAGGACATTGAGATCTTTTGGAAGAAGAACAGCG GTAAACGATTGGTTAAGAAGAAATTGGTCGGCCACTCAGGAACTGTTGAT GCTTTGCATATCATGCCCTCTAGAAAGATTTATATCTCAGATGTTAACAG AAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTCAATATATTT CGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTTGACTTGCAA GTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAACGTTATTTG CATTGAAATGGAAGGAACACAAGGGTTGGGTGTGGGGTATTTGTAGTGAT GAGAATAAAGACTCTGAATTCATTACCACCTCATTCGCTCCTGAAGTCAA TGTGTGGAACATAGAAAGACTGGATCTTGTAAACACCTTTGATTATCATC CTGGTGCGGTGTTATCTTTATGTTGTCAGGATCAAGTGCTAACGACGGGT TGTTTTGATAAGAAGTTACGACAGTTTGACCTTAGATCTGGTAAATTAAC GTTAGAACTGGCGCATCATAAAAAGCCAGTCGTCAGTTTATGTCTGACCG AAAACTACTTATTTTCCGGCAGTGCGGATAAGACGATACGTATTTATGAT ACCCGTGTACCAGAAAAAGAGTTGACGAAACTGATTCTTGATTCGCAAGC TTTGTGTATGAACACGGCACAAGAGCAAGGTCTTAGTTTCTTAAGAGTAG GCGGAAGCCATGGTGGTATGTTCTTTTTCGATATATCAGACGGTTGCCGA TTTTCTTTGTTGAATTCGTTTGATATTTGGAATAACCATAACCAGAAAGT CACTGACATTTGTAATTTCCGTGGTTGCTTGGTAGCTTGTTCTGACGGTG GACCTGTAAGAGCATACACGCCAGGTAGAGACTGCGCATTTATCAGAAGA CTTGACGATCCTTTGATGAAAGTTGGCATGTGTAGTTGTTATTCAAGAGG TGATGTGATGCTGACTGGTGGATCTGACAGTTGCGTCACCGAATGGAGAT TCGAAAATGAAGATTGAGTGGCCGTGATAGAAATGCAATGGTATGGCGAT CAAAGCATGATGGATATGAAGGGCAAGAGCTTCTTGAAGTACTTCAACAT AAGGTTGTCACAGACGTGGACTACATTAAATCTTGGGGTAAAGTTTACAT GGCTTTCGAGGACATTGAGATCTTTTGGAAGAAGAACAGCGGTAAACGAT TGGTTAAGAAGAAATTGGTCGGCCACTCAGGAACTGTTGATGCTTTGCAT ATCATGCCCTCTAGAAAGATTTATATCTCAGATGTTAACAGAAATAAACA ATATCGAAGACCTACCACCAGAGTTACTGCTCAATATATTTCGTTTCATT GACGTTCGAACGTTATTTGGTAAAGTTGTTTTGACTTGCAAGTATTTCCA TGACATTTTGACTGCTGAAGGCATATGGCAAACGTTATTTGCATTGAAAT GGAAGGAACACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00018310-exon-sc0000295-1575043694:356780..357109 | TCONS_00018310-exon-sc0000295-1575043694:356780..357109 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1575043694:356268..356445 | TCONS_00018310-exon-sc0000295-1575043694:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1575043694:355935..356020 | TCONS_00018310-exon-sc0000295-1575043694:355935..356020 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1575043694:354862..355708 | TCONS_00018310-exon-sc0000295-1575043694:354862..355708 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1510915933:356780..357109 | TCONS_00018310-exon-sc0000295-1510915933:356780..357109 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1510915933:356268..356445 | TCONS_00018310-exon-sc0000295-1510915933:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1510915933:355935..356020 | TCONS_00018310-exon-sc0000295-1510915933:355935..356020 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1510915933:354862..355708 | TCONS_00018310-exon-sc0000295-1510915933:354862..355708 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1491911889:356780..357109 | TCONS_00018310-exon-sc0000295-1491911889:356780..357109 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1491911889:356268..356445 | TCONS_00018310-exon-sc0000295-1491911889:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1491911889:355935..356020 | TCONS_00018310-exon-sc0000295-1491911889:355935..356020 | Clytia hemisphaerica | exon |
| TCONS_00018310-exon-sc0000295-1491911889:354862..355708 | TCONS_00018310-exon-sc0000295-1491911889:354862..355708 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000295 | supercontig | sc0000295:354862..357109 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|