TCONS_00018310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018310-protein
Unique NameTCONS_00018310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018310-protein ID=TCONS_00018310-protein|Name=TCONS_00018310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MLTEINNIEDLPPELLLNIFRFIDVRTLFGKVVLTCKYFHDILTAEGIWQ
TLFALKWKEHKVVTDVDYIKSWGKVYMAFEDIEIFWKKNSGKRLVKKKLV
GHSGTVDALHIMPSRKIYISGGRDRNAMVWRSKHDGYEGQELLEVLQHKG
WVWGICSDENKDSEFITTSFAPEVNVWNIERLDLVNTFDYHPGAVLSLCC
QDQVLTTGCFDKKLRQFDLRSGKLTLELAHHKKPVVSLCLTENYLFSGSA
DKTIRIYDTRVPEKELTKLILDSQALCMNTAQEQGLSFLRVGGSHGGMFF
FDISDGCRFSLLNSFDIWNNHNQKVTDICNFRGCLVACSDGGPVRAYTPG
RDCAFIRRLDDPLMKVGMCSCYSRGDVMLTGGSDSCVTEWRFENED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010276XLOC_010276Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018310TCONS_00018310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR001810F-box_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 221..258
e-value: 1.5E-5
score: 34.5
coord: 92..131
e-value: 0.034
score: 23.3
coord: 181..218
e-value: 1.5
score: 15.9
coord: 352..391
e-value: 54.0
score: 6.1
coord: 139..178
e-value: 2.0
score: 15.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 225..258
e-value: 0.0041
score: 17.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 228..267
score: 9.974
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 99..130
score: 10.943
IPR001810F-box domainPFAMPF12937F-box-likecoord: 8..53
e-value: 1.3E-8
score: 34.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 5..52
score: 13.048
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 5..89
NoneNo IPR availableGENE3D1.20.1280.50coord: 6..97
e-value: 2.2E-13
score: 50.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 169..277
e-value: 3.7E-19
score: 68.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 278..396
e-value: 7.4E-7
score: 27.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 98..168
e-value: 3.7E-9
score: 35.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 99..267
score: 21.806
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 95..394

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top