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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018309 ID=TCONS_00018309|Name=TCONS_00018309|organism=Clytia hemisphaerica|type=transcript|length=1516bp
TAACAGAAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTCAAT
ATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTTGAC
TTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAACGT
TATTTGCATTGAAATGGAAGGAACACAAGgtTGTCACAGACGTGGACTAC
ATTAAATCTTGGGGTAAAGTTTACATGGCTTTCGAGGACATTGAGATCTT
TTGGAAGAAGAACAGCGGTAAACGATTGGTTAAGAAGAAATTGGTCGGCC
ACTCAGGAACTGTTGATGCTTTGCATATCATGCCCTCTAGAAAGATTTAT
ATCTCAGGTGGCCGTGATAGAAATGCAATGGTATGGCGATCAAAGCATGA
TGGATATGAAGGGCAAGAGCTTCTTGAAGTACTTCAACATAAGGTTCAAT
CAACTACTTCCCTCTTATTCGAATTTCTGTCTTCCAAATgattctgtaat
tcgaattaaaaTGCAGAATGGACGTTTTAGCTTGGGAAGCCGTAAGAATC
TGTAATTTAAATCttacaattcaaaaaaaaacgtTACCCCCTCCCGTCTA
TTAATCATGAATtatgacatttttaaaaatattcttgtgTGTTCTATGTT
ATGATTTCTTTTCTTACAGGGTTGGGTGTGGGGTATTTGTAGTGATGAGA
ATAAAGACTCTGAATTCATTACCACCTCATTCGCTCCTGAAGTCAATGTG
TGGAACATAGAAAGACTGGATCTTGTAAACACCTTTGATTATCATCCTGG
TGCGGTGTTATCTTTATGTTGTCAGGATCAAGTGCTAACGACGGGTTGTT
TTGATAAGAAGTTACGACAGTTTGACCTTAGATCTGGTAAATTAACGTTA
GAACTGGCGCATCATAAAAAGCCAGTCGTCAGTTTATGTCTGACCGAAAA
CTACTTATTTTCCGGCAGTGCGGATAAGACGATACGTATTTATGATACCC
GTGTACCAGAAAAAGAGTTGACGAAACTGATTCTTGATTCGCAAGCTTTG
TGTATGAACACGGCACAAGAGCAAGGTCTTAGTTTCTTAAGAGTAGGCGG
AAGCCATGGTGGTATGTTCTTTTTCGATATATCAGACGGTTGCCGATTTT
CTTTGTTGAATTCGTTTGATATTTGGAATAACCATAACCAGAAAGTCACT
GACATTTGTAATTTCCGTGGTTGCTTGGTAGCTTGTTCTGACGGTGGACC
TGTAAGAGCATACACGCCAGGTAGAGACTGCGCATTTATCAGAAGACTTG
ACGATCCTTTGATGAAAGTTGGCATGTGTAGTTGTTATTCAAGAGGTGAT
GTGATGCTGACTGGTGGATCTGACAGTTGCGTCACCGAATGGAGattcga
aaatgaagattgaaagaTGAGTGAGTTTTTCTGACAGCGCTTTAGGGCTC
AATTTGGAGAGTAATTCTGAAAAGACGAGAAGGAGTGAAAAATATACACT
GTACGGCGAAGACGNN Run BLAST on NCBI transcript from alignment at sc0000295:354862..356958- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018309 ID=TCONS_00018309|Name=TCONS_00018309|organism=Clytia hemisphaerica|type=transcript|length=2097bp|location=Sequence derived from alignment at sc0000295:354862..356958- (Clytia hemisphaerica)
TAACAGAAATAAACAATATCGAAGACCTACCACCAGAGTTACTGCTCAAT
ATATTTCGTTTCATTGACGTTCGAACGTTATTTGGTAAAGTTGTTTTGAC
TTGCAAGTATTTCCATGACATTTTGACTGCTGAAGGCATATGGCAAACGT
TATTTGCATTGAAATGGAAGGAACACAAGGTACTATTTTTATTATGACCA
AAAAGTAAGAAATACTGAGGAAAAAAACAGAACAGATGATTACTTTAATT
GGTAATGGGGAGCACATATCCGTTTTCTTAATCAACTGGTTCCTTTGATT
GACAAGTTTTAGTGCCAGGTCTTCGTTTCACTCTTCGTTTTTTACTCTTT
TCTCGCTTTCCTCAATATTGTATCAAGTCGGATACAGTCGGATATTAGAA
AATCTTAGAACAAGCCTGACAGAATAAAAATTTCACATTGGTTTAACTTT
GAATCTCAAATTGATTCAATTATTTAAACACAAGATATTCAAAATCTTTC
TTTTTTTTCTCAGGTTGTCACAGACGTGGACTACATTAAATCTTGGGGTA
AAGTTTACATGGCTTTCGAGGACATTGAGATCTTTTGGAAGAAGAACAGC
GGTAAACGATTGGTTAAGAAGAAATTGGTCGGCCACTCAGGAACTGTTGA
TGCTTTGCATATCATGCCCTCTAGAAAGATTTATATCTCAGGTACAAAGT
CTTCTTCCTTGTTTTGAGGTAAGGATCTGAAGGTGCTTGGGTTTCTTCAT
TTAAATTTACGGGGAATAGTATGTGAATGAAAGGCTGCTAGAATGAGAAA
ATGTATGAGAAGTGATGAAACTATGACGAAAATTATTCCGGTATTTAATG
TTTCTTTCAAATAGCTAAAGTATTTGATTATTAACCATTTCAAAGAATCT
TTTTTATGTCTCAACCGTCTTTATGCTCTCATCTTTAGGTGGCCGTGATA
GAAATGCAATGGTATGGCGATCAAAGCATGATGGATATGAAGGGCAAGAG
CTTCTTGAAGTACTTCAACATAAGGTTCAATCAACTACTTCCCTCTTATT
CGAATTTCTGTCTTCCAAATGATTCTGTAATTCGAATTAAAATGCAGAAT
GGACGTTTTAGCTTGGGAAGCCGTAAGAATCTGTAATTTAAATCTTACAA
TTCAAAAAAAAACGTTACCCCCTCCCGTCTATTAATCATGAATTATGACA
TTTTTAAAAATATTCTTGTGTGTTCTATGTTATGATTTCTTTTCTTACAG
GGTTGGGTGTGGGGTATTTGTAGTGATGAGAATAAAGACTCTGAATTCAT
TACCACCTCATTCGCTCCTGAAGTCAATGTGTGGAACATAGAAAGACTGG
ATCTTGTAAACACCTTTGATTATCATCCTGGTGCGGTGTTATCTTTATGT
TGTCAGGATCAAGTGCTAACGACGGGTTGTTTTGATAAGAAGTTACGACA
GTTTGACCTTAGATCTGGTAAATTAACGTTAGAACTGGCGCATCATAAAA
AGCCAGTCGTCAGTTTATGTCTGACCGAAAACTACTTATTTTCCGGCAGT
GCGGATAAGACGATACGTATTTATGATACCCGTGTACCAGAAAAAGAGTT
GACGAAACTGATTCTTGATTCGCAAGCTTTGTGTATGAACACGGCACAAG
AGCAAGGTCTTAGTTTCTTAAGAGTAGGCGGAAGCCATGGTGGTATGTTC
TTTTTCGATATATCAGACGGTTGCCGATTTTCTTTGTTGAATTCGTTTGA
TATTTGGAATAACCATAACCAGAAAGTCACTGACATTTGTAATTTCCGTG
GTTGCTTGGTAGCTTGTTCTGACGGTGGACCTGTAAGAGCATACACGCCA
GGTAGAGACTGCGCATTTATCAGAAGACTTGACGATCCTTTGATGAAAGT
TGGCATGTGTAGTTGTTATTCAAGAGGTGATGTGATGCTGACTGGTGGAT
CTGACAGTTGCGTCACCGAATGGAGATTCGAAAATGAAGATTGAAAGATG
AGTGAGTTTTTCTGACAGCGCTTTAGGGCTCAATTTGGAGAGTAATTCTG
AAAAGACGAGAAGGAGTGAAAAATATACACTGTACGGCGAAGACGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018309-exon-sc0000295-1575043694:356780..356958 | TCONS_00018309-exon-sc0000295-1575043694:356780..356958 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1575043694:356268..356445 | TCONS_00018309-exon-sc0000295-1575043694:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1575043694:354862..356020 | TCONS_00018309-exon-sc0000295-1575043694:354862..356020 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1510915933:356780..356958 | TCONS_00018309-exon-sc0000295-1510915933:356780..356958 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1510915933:356268..356445 | TCONS_00018309-exon-sc0000295-1510915933:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1510915933:354862..356020 | TCONS_00018309-exon-sc0000295-1510915933:354862..356020 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1491911889:356780..356958 | TCONS_00018309-exon-sc0000295-1491911889:356780..356958 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1491911889:356268..356445 | TCONS_00018309-exon-sc0000295-1491911889:356268..356445 | Clytia hemisphaerica | exon |
| TCONS_00018309-exon-sc0000295-1491911889:354862..356020 | TCONS_00018309-exon-sc0000295-1491911889:354862..356020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:354862..356958 - |
Blast
The following BLAST results are available for this feature:
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