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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018302 ID=TCONS_00018302|Name=TCONS_00018302|organism=Clytia hemisphaerica|type=transcript|length=1722bpRun BLAST on NCBI protein sequence of TCONS_00018302-protein >TCONS_00018302-protein ID=TCONS_00018302-protein|Name=TCONS_00018302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MGKQQQTTFIKAMYSNEKDSLLKNDSSQSYSSSDETPGTVNRQTPSLNGDRun BLAST on NCBI transcript from alignment at sc0000295:282352..291416- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018302 ID=TCONS_00018302|Name=TCONS_00018302|organism=Clytia hemisphaerica|type=transcript|length=9065bp|location=Sequence derived from alignment at sc0000295:282352..291416- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000295:282352..291416- >TCONS_00018302 ID=TCONS_00018302|Name=TCONS_00018302|organism=Clytia hemisphaerica|type=CDS|length=13311bp|location=Sequence derived from alignment at sc0000295:282352..291416- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018302 vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 2.920e-86 Identity = 164/390 (42.05%), Postives = 248/390 (63.59%), Query Frame = 3
Query: 447 EKGTSNLATMVHIFKGNVGTGILSLPAAVKHAGVVAGPVGLCIIAFIAVHCMHMLVRCSHFFCRKTGKQAMSYGEVA----EECSKGIFKDKAYWPKRIVNLFLIVTQLGFCAVYFVFVAST---IVEVAG-------------WGDKVDKRXXXXXXXXXXXXXSYIRSLEKLAYLSIIANICCVVGLITIYQYLARNLGDPTRLPMFSGVQNLPMFFAMALFSFEGIGVVLPLENEMQKPEDFGWVLNVGMGIISCMFVSMGLLGYVAFGDKIEGSVSLNLPDNYLYDGVKICYAIAMFLTYFLQFYVXXXXXXXXXXXKWQKRHGSCFEYTFRXXXXXXXXXXXXGIPLLDDFXXXXXXXXXXXXXXXFPPLIHTLTFWHHGLHPMA 1556
T+ T++H+ KGN+GTG+L LP AVK+AG+V GP+ L II +AVHCM +LV+C+H FCR+ K + YG+ E ++ A+W +R+V+ FLIVTQLGFC VYFVF+A ++E A +D RL ++ + LL +IR+L L+ S++ANI +V L+ IYQ++ + + DP+ LP+ + + P+FF A+FSFEGIG+VLPLEN+M+ P F +L +GM I++ +++S+G LGY+ FG I+GS++LNLP+ +LY VK+ Y+I +F TY LQFYVP I++P +++ + + RTVLV T LA IP LD I+L+G+++S+ LA+I PPL+ TF+ G+ P+
Sbjct: 44 SNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLT 433 The following BLAST results are available for this feature:
BLAST of TCONS_00018302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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