TCONS_00018258 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018258
Unique Name	TCONS_00018258
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2660

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000295:165660..169301+
coding sequence from alignment at sc0000295:165660..169301+

transcript sequence

>TCONS_00018258 ID=TCONS_00018258|Name=TCONS_00018258|organism=Clytia hemisphaerica|type=transcript|length=2660bp
ataacgaaaatgcCCTTTCCTGTGGAAACTGTATCTGGAAAATAACATGA
AACTTCAAAGCACTGTAAAAGCAATCATTTTATAAAATCTTTTAATCGTT
ttatgtttttgtcatttttagggataAGAAAAGACATTCTTTAATTGAAT
AAGTGAATTAGGTGTATCTGTTCGGATATAGTTACAACTGAGAGAAATTC
CTTGAGGAATCAGAAGATGCTTCTAAGGAAAGCAAGCAGAGAAAAGATGA
AGAAACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTC
AAAATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCAGCCTT
CCAATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTG
GTGCTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTCTGTAT
AACCCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAAGTGCC
AACAATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTACTCAT
GGACAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATCCATTG
TTCCCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGACCTGAA
TATAGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCCAGGGA
TGGCTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCATTCCAA
GTATGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATATTACA
CGAGAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACCTTATC
ATATCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaattttcattg
aaatggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCAAATAA
TCTAGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAACCTTC
AAAAGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGTACGAT
TCTgaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTCATCCC
TGAAGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCCTTCCT
ACTTGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGGAGACA
CATTTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATTTACCA
CCCAGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACTGAAAC
GTGATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCAAAGAG
AAACATAAAGATAAATATCAATTGAAAGAAATCCTCTCAGTCGAACAGAA
CGAAGATGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACTTTTGA
ACGACCAAGATGAAAAAACATATCGATTCGCCGAATATTTATATCATCCA
AAAGGCAGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAATAAAAC
AGCTGAAGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAA
TTCACTTCATAAACACTGTCAATCAGATTTATAAAGAGACCAATGATGAG
AACATTGCAATTACTATTGTGGATTTTGACAACAAGGACACTGGTGTAAT
GAAAGCATTGAAAGAATCACCATTGAAAAAATACACTTATATCAGGAGAA
AGGGCAAATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTTCCATC
ACCAATCCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTCATACC
AGCTGACTTCATCGACAATGTTCGGAAGCATACTATCCAAGGCAGAATGG
CTTGTAGTCCATTGTTGAATCGTTTGCAATGTGGCGCAACACCTCAACAT
CCAACTGGCTATTGGGAAGATGAAGGCTATGGTATCTTTGGTATCTACAA
ATCAGACTGGAATTACGTGGGTGGTATGAACGCCAAAGGCTTTCAAGACA
AATGGGGTGGAGAGGATTGGGAACTGTTAGATTCTGTATTGAGTCATGGA
TTTGAATGTGAAagactaaaaattaaaaatttccatcacGTTTTTCATTC
CAAAAAGAACATGTGGAATAATTTATTGTTCACGTGATATCTGGTTTTGG
TGCAATTTGATATTCTCATCTAATGCCTTGCTGCATCTGGTTGGATTGTT
AATCTGTAATAAATAGAGTTCAATCTATAAAATGTTGATGTTGATAGTTC
TGTTGAAGCTAAATAATTCAGTATTGCTCCGAATCTTTTTTCTACACAGT
ACTTTaactcaagaaaaaaaattcaacaaatgTACAAGAGATTATTCAAG
GATAAAATTTTGCGGTAAAAAAATTGTGCTGGATTTTGTGGATTTTAGTT
TCATCTGTGAAATAAAGTCCAATAGAAATTTGTAAAGGTCATGCTCGAAT
TATCTTTTGAATAGACCGAATATAGCATCAGAATCTTATGCTATCTCTAG
AGTTGATTAGTGGTTGAGAAAGGTCGGTCCATATGGAAATGCCCATTCTA
AGTTCAGTCTTTTTAACATTCATAAAGATTTTTACTCCATGTTtaataaa
aggataaaaa

Run BLAST on NCBI

protein sequence of TCONS_00018258-protein

>TCONS_00018258-protein ID=TCONS_00018258-protein|Name=TCONS_00018258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp
MLLRKASREKMKKLLILVFIAGFFYLFLKISNITQKQSQKSPPAFQSSYI
ILRQGSSLPLFGAIQSQRRLIGVSEILYNPEIELEARDYIPVKVPTISAP
EQETNSLNLYSWTEICNKNIDSLIYHPLFPHLPEYKKSTVKLDLNIGKNT
GVYLFGKLKPGMAGVYRFHALSTKIAFQVWLSSDENPSNSKLILHENLVR
SKDLELFNSPYHISIVLKTGTSPGKFSLKWLTPGKKEYTLIPSNNLESYP
PDSPMVREENLQKMMILDKKIPLRDMYDSDQNKRRALMFKLPFIPEEDIE
GLFPKCNYDPSYLIKKKITKQYAGQWETHFTSVYPPDETDMVIYHPGMKD
PHIIYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVK
GDRYLVELELLNDQDEKTYRFAEYLYHPKGSNQLCYPENFKWNKTAEVNL
IITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKE
SPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFID
NVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNY
VGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMW
NNLLFT

Run BLAST on NCBI

transcript from alignment at sc0000295:165660..169301+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018258 ID=TCONS_00018258|Name=TCONS_00018258|organism=Clytia hemisphaerica|type=transcript|length=3642bp|location=Sequence derived from alignment at sc0000295:165660..169301+ (Clytia hemisphaerica)
ataacgaaaatgcCCTTTCCTGTGGAAACTGTATCTGGAAAATAACATGA
AACTTCAAAGCACTGTAAAAGCAATCATTTTATAAAATCTTTTAATCGTT
ttatgtttttgtcatttttagggataAGAAAAGACATTCTTTAATTGAAT
AAGTGAATTAGGTGTATCTGTTCGGATATAGTTACAACTGAGAGAAATTC
CTTGAGGAATCAGAAGATGCTTCTAAGGAAAGGTTAGTTTCATTTTATCT
TTGCCTTCAAGGTAAGATGTTGATTTAATGGCAATTTGTAATATTTTGCT
GATGATCTAgcatttctcaatattttgaaagtttcaataGAATTAGTTTA
GAAATCTtaccttttttgttttatatgCCCTTAAATTTCATTATCCAATT
CctcaatatttcaattttctttgcCATAGCAAGCAGAGAAAAGATGAAGA
AACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTCAAA
ATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCAGCCTTCCA
ATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTGGTG
CTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTCTGTATAAC
CCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAAGTGCCAAC
AATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTACTCATGGA
CAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATCCATTGTTC
CCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGACCTGAATAT
AGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCCAGGGATGG
CTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCATTCCAAGTA
TGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATATTACACGA
GAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACCTTATCATA
TCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaattttcattgaaa
tggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCAAATAATCT
AGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAACCTTCAAA
AGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGTACGATTCT
gaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTCATCCCTGA
AGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCCTTCCTACT
TGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGGAGACACAT
TTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATTTACCACCC
AGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACTGAAACGTG
ATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCAAAGAGAAA
CATAAAGAGTAAGTTTATTTTTATATACTACCCTTGAATGGAAGTACTTA
AAAGTTCACCCACCTTGATGAACACTTTCGGTTCTTTTAACAACTTCATC
CAACTGTTTGCTCAAATCAAGCTTCAAGACCTCAGTGAATGGTGACCATT
TACCTTAactggattaaatttcgcgtggattgatttttaaaatgttgtcc
atgcaaaaattttggattttcaattCGCGAAGCTGcgcgaagaaaaaaaa
tccactTTATTCTTTTTAGTCATTCCTTGTGACGATGTGAAGCTCTGACG
TTTTGTATATCGAGAATAACTCTTCAATGTTCGAGTTATTTCAAATGAAT
GATAAAATGCTCCTATGAACTGATTGCCTTGAAAACTGGCTGAGTCCGAA
ATATTCCggaaaaatcaaataataataGCCGCATTCCTTATTCCGCATTA
TTAGCGTTCGAAATAATATCATTCTATACAcatattttttgtcattcttc
CATAGTAAATATCAATTGAAAGAAATCCTCTCAGTCGAACAGAACGAAGA
TGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACTTTTGAACGACC
AAGATGAAAAAACATATCGATTCGCCGAATATTTATATCATCCAAAAGGC
AGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAATAAAACAGCTGA
AGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAATTCACT
TCATAAACACTGTCAATCAGATTTATAAAGAGACCAATGATGAGAACATT
GCAATTACTATTGTGGATTTTGACAACAAGGACACTGGTGTAATGAAAGC
ATTGAAAGAATCACCATTGAAAAAATACACTTATATCAGGAGAAAGGGCA
AATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTTCCATCACCAAT
CCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTCATACCAGCTGA
CTTCATCGACAATGTTCGGAAGGTAATTGCACTATTTATCATATCAAGCT
CTTTGCTCTTCCAGCAATTTATGTACACACCGTTGTGTGCCCTAGTCATT
ATTTTCTAGCTTTGGAAGAAGAACTCCACTTCTGCTAAGTTTGTTTCTTG
TCACACTACAATGATTTAAAGCTTTGTTATGCTGTCGCAAGTTATGTTAG
AGCGAATGGCGATATTTGAGATTTTCGTAATCAAATGGGCTTTTTTTTTC
ATGCCAGTTTAGTGACAGGTATGTGTActaattttactttttgttttata
atttgTTTAGCATACTATCCAAGGCAGAATGGCTTGTAGTCCATTGTTGA
ATCGTTTGCAATGTGGCGCAACACCTCAACATCCAACTGGCTATTGGGAA
GATGAAGGCTATGGTATCTTTGGTATCTACAAATCAGACTGGAATTACGT
GGGTGGTATGAACGCCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGATT
GGGAACTGTTAGATTCTGTATTGAGTCATGGATTTGAATGTGAAagacta
aaaattaaaaatttccatcacGTTTTTCATTCCAAAAAGAACATGTGGAA
TAATTTATTGTTCACGTGATATCTGGTTTTGGTGCAATTTGATATTCTCA
TCTAATGCCTTGCTGCATCTGGTTGGATTGTTAATCTGTAATAAATAGAG
TTCAATCTATAAAATGTTGATGTTGATAGTTCTGTTGAAGCTAAATAATT
CAGTATTGCTCCGAATCTTTTTTCTACACAGTACTTTaactcaagaaaaa
aaattcaacaaatgTACAAGAGATTATTCAAGGATAAAATTTTGCGGTAA
AAAAATTGTGCTGGATTTTGTGGATTTTAGTTTCATCTGTGAAATAAAGT
CCAATAGAAATTTGTAAAGGTCATGCTCGAATTATCTTTTGAATAGACCG
AATATAGCATCAGAATCTTATGCTATCTCTAGAGTTGATTAGTGGTTGAG
AAAGGTCGGTCCATATGGAAATGCCCATTCTAAGTTCAGTCTTTTTAACA
TTCATAAAGATTTTTACTCCATGTTtaataaaaggataaaaa

Coding sequence (CDS) from alignment at sc0000295:165660..169301+

>TCONS_00018258 ID=TCONS_00018258|Name=TCONS_00018258|organism=Clytia hemisphaerica|type=CDS|length=7884bp|location=Sequence derived from alignment at sc0000295:165660..169301+ (Clytia hemisphaerica)
ATGCTTCTAAGGAAAGCAAGCAGAGAAAAGATGAAGAAACTGCTGATCCT
AGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTCAAAATCTCGAATATTA
CTCAAAAACAATCACAAAAGTCTCCACCAGCCTTCCAATCAAGTTACATC
ATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTGGTGCTATACAAAGCCA
AAGGCGTCTAATTGGTGTGTCTGAAATTCTGTATAACCCTGAAATTGAAC
TTGAAGCACGCGATTACATTCCTGTCAAAGTGCCAACAATCAGTGCACCA
GAACAAGAAACAAACTCTTTAAACCTCTACTCATGGACAGAGATATGTAA
TAAGAATATAGATAGTTTGATCTATCATCCATTGTTCCCTCATCTACCTG
AATATAAAAAATCAACAGTCAAGTTAGACCTGAATATAGGCAAGAACACA
GGTGTCTATTTATTTGGTAAATTGAAGCCAGGGATGGCTGGTGTATATAG
ATTCCATGCATTATCTACCAAAATTGCATTCCAAGTATGGCTATCAAGTG
ATGAGAACCCGTCCAATTCCAAACTGATATTACACGAGAATCTTGTCCGG
TCAAAAGACTTAGAACTTTTCAATTCACCTTATCATATCAGTATTGTTCT
AAAAACGGGCACCTCCCCTGgtaaattttcattgaaatggtTAACACCAG
GCAAGAAAGAATACACTTTGATCCCATCAAATAATCTAGAATCTTATCCA
CCGGACAGTCCAATGGTGCGTGAAGAGAACCTTCAAAAGATGATGATTTT
GGATAAGAAAATACCTTTGCGTGATATGTACGATTCTgaccaaaacaaaa
gaagagctTTGATGTTCAAACTACCGTTCATCCCTGAAGAAGACATTGAA
GGTTTGTTCCCAAAATGCAATTATGATCCTTCCTACTTGATCAAGAAGAA
GATTACTAAACAATATGCAGGACAGTGGGAGACACATTTCACGTCAGTTT
ATCCTCCTGATGAGACAGATATGGTTATTTACCACCCAGGAATGAAAGAC
CCACACATCATCTATGGTAATCCTTTACTGAAACGTGATGTGGCTGATTT
CATTGTTGAAAAAGTGGTCAATGCCATCAAAGAGAAACATAAAGATAAAT
ATCAATTGAAAGAAATCCTCTCAGTCGAACAGAACGAAGATGACGTCAAA
GGTGATCGTTACTTAGTGGAACTGGAACTTTTGAACGACCAAGATGAAAA
AACATATCGATTCGCCGAATATTTATATCATCCAAAAGGCAGCAACCAGC
TATGTTACCCTGAGAATTTCAAATGGAATAAAACAGCTGAAGTGAACCTC
ATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAATTCACTTCATAAACAC
TGTCAATCAGATTTATAAAGAGACCAATGATGAGAACATTGCAATTACTA
TTGTGGATTTTGACAACAAGGACACTGGTGTAATGAAAGCATTGAAAGAA
TCACCATTGAAAAAATACACTTATATCAGGAGAAAGGGCAAATTTCATAA
AACACTAGCGCTGAATGATGCAGCAGCTTCCATCACCAATCCTGATGCTA
TTGTCATGCAAGTTGATCTTCATTTGGTCATACCAGCTGACTTCATCGAC
AATGTTCGGAAGCATACTATCCAAGGCAGAATGGCTTGTAGTCCATTGTT
GAATCGTTTGCAATGTGGCGCAACACCTCAACATCCAACTGGCTATTGGG
AAGATGAAGGCTATGGTATCTTTGGTATCTACAAATCAGACTGGAATTAC
GTGGGTGGTATGAACGCCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGA
TTGGGAACTGTTAGATTCTGTATTGAGTCATGGATTTGAATGTGAAagac
taaaaattaaaaatttccatcacGTTTTTCATTCCAAAAAGAACATGTGG
AATAATTTATTGTTCACGTGAATGCTTCTAAGGAAAGCAAGCAGAGAAAA
GATGAAGAAACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGT
TCCTCAAAATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCA
GCCTTCCAATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCT
ATTTGGTGCTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTC
TGTATAACCCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAA
GTGCCAACAATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTA
CTCATGGACAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATC
CATTGTTCCCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGAC
CTGAATATAGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCC
AGGGATGGCTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCAT
TCCAAGTATGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATA
TTACACGAGAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACC
TTATCATATCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaatttt
cattgaaatggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCA
AATAATCTAGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAA
CCTTCAAAAGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGT
ACGATTCTgaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTC
ATCCCTGAAGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCC
TTCCTACTTGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGG
AGACACATTTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATT
TACCACCCAGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACT
GAAACGTGATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCA
AAGAGAAACATAAAGATAAATATCAATTGAAAGAAATCCTCTCAGTCGAA
CAGAACGAAGATGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACT
TTTGAACGACCAAGATGAAAAAACATATCGATTCGCCGAATATTTATATC
ATCCAAAAGGCAGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAAT
AAAACAGCTGAAGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTG
GTTAATTCACTTCATAAACACTGTCAATCAGATTTATAAAGAGACCAATG
ATGAGAACATTGCAATTACTATTGTGGATTTTGACAACAAGGACACTGGT
GTAATGAAAGCATTGAAAGAATCACCATTGAAAAAATACACTTATATCAG
GAGAAAGGGCAAATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTT
CCATCACCAATCCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTC
ATACCAGCTGACTTCATCGACAATGTTCGGAAGCATACTATCCAAGGCAG
AATGGCTTGTAGTCCATTGTTGAATCGTTTGCAATGTGGCGCAACACCTC
AACATCCAACTGGCTATTGGGAAGATGAAGGCTATGGTATCTTTGGTATC
TACAAATCAGACTGGAATTACGTGGGTGGTATGAACGCCAAAGGCTTTCA
AGACAAATGGGGTGGAGAGGATTGGGAACTGTTAGATTCTGTATTGAGTC
ATGGATTTGAATGTGAAagactaaaaattaaaaatttccatcacGTTTTT
CATTCCAAAAAGAACATGTGGAATAATTTATTGTTCACGTGAATGCTTCT
AAGGAAAGCAAGCAGAGAAAAGATGAAGAAACTGCTGATCCTAGTTTTTA
TTGCTGGTTTCTTTTATTTGTTCCTCAAAATCTCGAATATTACTCAAAAA
CAATCACAAAAGTCTCCACCAGCCTTCCAATCAAGTTACATCATTTTGAG
GCAAGGAAGTTCATTGCCGCTATTTGGTGCTATACAAAGCCAAAGGCGTC
TAATTGGTGTGTCTGAAATTCTGTATAACCCTGAAATTGAACTTGAAGCA
CGCGATTACATTCCTGTCAAAGTGCCAACAATCAGTGCACCAGAACAAGA
AACAAACTCTTTAAACCTCTACTCATGGACAGAGATATGTAATAAGAATA
TAGATAGTTTGATCTATCATCCATTGTTCCCTCATCTACCTGAATATAAA
AAATCAACAGTCAAGTTAGACCTGAATATAGGCAAGAACACAGGTGTCTA
TTTATTTGGTAAATTGAAGCCAGGGATGGCTGGTGTATATAGATTCCATG
CATTATCTACCAAAATTGCATTCCAAGTATGGCTATCAAGTGATGAGAAC
CCGTCCAATTCCAAACTGATATTACACGAGAATCTTGTCCGGTCAAAAGA
CTTAGAACTTTTCAATTCACCTTATCATATCAGTATTGTTCTAAAAACGG
GCACCTCCCCTGgtaaattttcattgaaatggtTAACACCAGGCAAGAAA
GAATACACTTTGATCCCATCAAATAATCTAGAATCTTATCCACCGGACAG
TCCAATGGTGCGTGAAGAGAACCTTCAAAAGATGATGATTTTGGATAAGA
AAATACCTTTGCGTGATATGTACGATTCTgaccaaaacaaaagaagagct
TTGATGTTCAAACTACCGTTCATCCCTGAAGAAGACATTGAAGGTTTGTT
CCCAAAATGCAATTATGATCCTTCCTACTTGATCAAGAAGAAGATTACTA
AACAATATGCAGGACAGTGGGAGACACATTTCACGTCAGTTTATCCTCCT
GATGAGACAGATATGGTTATTTACCACCCAGGAATGAAAGACCCACACAT
CATCTATGGTAATCCTTTACTGAAACGTGATGTGGCTGATTTCATTGTTG
AAAAAGTGGTCAATGCCATCAAAGAGAAACATAAAGATAAATATCAATTG
AAAGAAATCCTCTCAGTCGAACAGAACGAAGATGACGTCAAAGGTGATCG
TTACTTAGTGGAACTGGAACTTTTGAACGACCAAGATGAAAAAACATATC
GATTCGCCGAATATTTATATCATCCAAAAGGCAGCAACCAGCTATGTTAC
CCTGAGAATTTCAAATGGAATAAAACAGCTGAAGTGAACCTCATTATTAC
TTCAGCTGGTCAGAGTCGTTGGTTAATTCACTTCATAAACACTGTCAATC
AGATTTATAAAGAGACCAATGATGAGAACATTGCAATTACTATTGTGGAT
TTTGACAACAAGGACACTGGTGTAATGAAAGCATTGAAAGAATCACCATT
GAAAAAATACACTTATATCAGGAGAAAGGGCAAATTTCATAAAACACTAG
CGCTGAATGATGCAGCAGCTTCCATCACCAATCCTGATGCTATTGTCATG
CAAGTTGATCTTCATTTGGTCATACCAGCTGACTTCATCGACAATGTTCG
GAAGCATACTATCCAAGGCAGAATGGCTTGTAGTCCATTGTTGAATCGTT
TGCAATGTGGCGCAACACCTCAACATCCAACTGGCTATTGGGAAGATGAA
GGCTATGGTATCTTTGGTATCTACAAATCAGACTGGAATTACGTGGGTGG
TATGAACGCCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGATTGGGAAC
TGTTAGATTCTGTATTGAGTCATGGATTTGAATGTGAAagactaaaaatt
aaaaatttccatcacGTTTTTCATTCCAAAAAGAACATGTGGAATAATTT
ATTGTTCACGTGAATGCTTCTAAGGAAAGCAAGCAGAGAAAAGATGAAGA
AACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTCAAA
ATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCAGCCTTCCA
ATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTGGTG
CTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTCTGTATAAC
CCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAAGTGCCAAC
AATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTACTCATGGA
CAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATCCATTGTTC
CCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGACCTGAATAT
AGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCCAGGGATGG
CTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCATTCCAAGTA
TGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATATTACACGA
GAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACCTTATCATA
TCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaattttcattgaaa
tggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCAAATAATCT
AGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAACCTTCAAA
AGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGTACGATTCT
gaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTCATCCCTGA
AGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCCTTCCTACT
TGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGGAGACACAT
TTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATTTACCACCC
AGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACTGAAACGTG
ATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCAAAGAGAAA
CATAAAGATAAATATCAATTGAAAGAAATCCTCTCAGTCGAACAGAACGA
AGATGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACTTTTGAACG
ACCAAGATGAAAAAACATATCGATTCGCCGAATATTTATATCATCCAAAA
GGCAGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAATAAAACAGC
TGAAGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAATTC
ACTTCATAAACACTGTCAATCAGATTTATAAAGAGACCAATGATGAGAAC
ATTGCAATTACTATTGTGGATTTTGACAACAAGGACACTGGTGTAATGAA
AGCATTGAAAGAATCACCATTGAAAAAATACACTTATATCAGGAGAAAGG
GCAAATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTTCCATCACC
AATCCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTCATACCAGC
TGACTTCATCGACAATGTTCGGAAGCATACTATCCAAGGCAGAATGGCTT
GTAGTCCATTGTTGAATCGTTTGCAATGTGGCGCAACACCTCAACATCCA
ACTGGCTATTGGGAAGATGAAGGCTATGGTATCTTTGGTATCTACAAATC
AGACTGGAATTACGTGGGTGGTATGAACGCCAAAGGCTTTCAAGACAAAT
GGGGTGGAGAGGATTGGGAACTGTTAGATTCTGTATTGAGTCATGGATTT
GAATGTGAAagactaaaaattaaaaatttccatcacGTTTTTCATTCCAA
AAAGAACATGTGGAATAATTTATTGTTCACGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010261	XLOC_010261	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018258-exon-sc0000295-1491911889:165660..165891	TCONS_00018258-exon-sc0000295-1491911889:165660..165891	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1510915933:165660..165891	TCONS_00018258-exon-sc0000295-1510915933:165660..165891	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1575043694:165660..165891	TCONS_00018258-exon-sc0000295-1575043694:165660..165891	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1491911889:166089..167217	TCONS_00018258-exon-sc0000295-1491911889:166089..167217	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1510915933:166089..167217	TCONS_00018258-exon-sc0000295-1510915933:166089..167217	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1575043694:166089..167217	TCONS_00018258-exon-sc0000295-1575043694:166089..167217	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1491911889:167715..168231	TCONS_00018258-exon-sc0000295-1491911889:167715..168231	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1510915933:167715..168231	TCONS_00018258-exon-sc0000295-1510915933:167715..168231	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1575043694:167715..168231	TCONS_00018258-exon-sc0000295-1575043694:167715..168231	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1491911889:168520..169301	TCONS_00018258-exon-sc0000295-1491911889:168520..169301	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1510915933:168520..169301	TCONS_00018258-exon-sc0000295-1510915933:168520..169301	Clytia hemisphaerica	exon
TCONS_00018258-exon-sc0000295-1575043694:168520..169301	TCONS_00018258-exon-sc0000295-1575043694:168520..169301	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018258-protein	TCONS_00018258-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000295	supercontig	sc0000295:165660..169301 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19696	0.29856	0.109898	0.599304	3.13584	2.33812	0.933833	1.51263	1.17781	3.44807	3.02695	1.59905	1.73864	1.97685	1.14803	1.505	2.72897	3.32286	3.07478	2.76724	1.80389	2.11558	3.95769	4.83885	3.38333	6.50196	4.73183	2.98058	5.28249	5.07933

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008428	Chond_GalNAc
IPR029044	Nucleotide-diphossugar_trans

Vocabulary: **Molecular Function**
Term	Definition
GO:0008376	acetylgalactosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0032580	Golgi cisterna membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032580	Golgi cisterna membrane
molecular_function	GO:0008376	acetylgalactosaminyltransferase activity

Blast

[Close]

BLAST of TCONS_00018258 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.285e-72
Identity = 114/322 (35.40%), Postives = 187/322 (58.07%), Query Frame = 1

Query: 1276 IYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVKGDRYLVELELLNDQDEKTYRFAEYLY------------------------HPKGSNQLCYPENFKWNKTAEVNLIITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKESPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFIDNVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNYVGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMWN 2169
            + GN  L    A  +  + +  +  +H  ++ L  I++VE+  D  +G R+L+ELEL  ++     R +EY++                         P G  +LC P    W +   V+ I+    Q+RW+  F+  +  ++  T D   ++ +VDF+++D  V +AL+ + L +Y Y+RR G F ++  L     ++ +  +IV   DLH+  P + +D +RKH ++GR+A +P++ RL CG++P+ P GYWE  G+G+FGIYKSD++ VGGMN + F+D+WGGEDWELLD VL  G E ERL+++NF+H +HSK+ MW+
Sbjct:  707 VSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELEL-QERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027

The following BLAST results are available for this feature:

BLAST of TCONS_00018258 vs. Swiss-Prot (Human)

BLAST of TCONS_00018258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B4GN4	2.285e-72	35.40	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a...	[more]

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TCONS_00018258 (transcript) - C. hemisphaerica