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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018194 ID=TCONS_00018194|Name=TCONS_00018194|organism=Clytia hemisphaerica|type=transcript|length=4699bpRun BLAST on NCBI protein sequence of TCONS_00018194-protein >TCONS_00018194-protein ID=TCONS_00018194-protein|Name=TCONS_00018194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1222bp MAASMKWKCVKEPSGPSPKPRHGHRAVAIRDLIVIFGGGNEGIVEELHVYRun BLAST on NCBI transcript from alignment at sc0000291:178868..192262+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018194 ID=TCONS_00018194|Name=TCONS_00018194|organism=Clytia hemisphaerica|type=transcript|length=13395bp|location=Sequence derived from alignment at sc0000291:178868..192262+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000291:178868..192262+ >TCONS_00018194 ID=TCONS_00018194|Name=TCONS_00018194|organism=Clytia hemisphaerica|type=CDS|length=62373bp|location=Sequence derived from alignment at sc0000291:178868..192262+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018194 vs. Swiss-Prot (Human)
Match: HCFC1 (Host cell factor 1 OS=Homo sapiens GN=HCFC1 PE=1 SV=2) HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0 Identity = 261/388 (67.27%), Postives = 327/388 (84.28%), Query Frame = 2
Query: 101 KWKCVKEPSGPSPKPRHGHRAVAIRDLIVIFGGGNEGIVEELHVYNTATNQWFVPAVQGDIPPGCAAFGFVCDGTRLLIFGGMVEYGRYSNELYELQASRWEWKHLHPKAPANNITPCARLGHSFTLVGKRVFLFGGLANDSEDPRSNIPRYLNDLYTLDLSQHDN-LQWDVPCTYGQPPTPRESHSAVLHTAENGKHPRLFIYGGMSGCRLGDVYILDVEKMLWSKPVIHGIAPLPRSLHTAVMIGKRMFVFGGWVPLIVEDGR-SSHEKEWKCTNTLACLNVEKLRWETINVEGADDQMPKPRAGHAAVNVHTRMYIWSGRDGYRRAWNNQVENVCCKDLWFLETERPPAPSRVQLVRATTTTLEVCWGTIPTADAYIIQIQKYEV 1258
+WK V SGP P+PRHGHRAVAI++LIV+FGGGNEGIV+ELHVYNTATNQWF+PAV+GDIPPGCAA+GFVCDGTRLL+FGGMVEYG+YSN+LYELQASRWEWK L K P N PC RLGHSF+LVG + +LFGGLANDSEDP++NIPRYLNDLY L+L + WD+P TYG P PRESH+AV++T ++ K +L IYGGMSGCRLGD++ LD++ + W+KP + G+APLPRSLH+A IG +M+VFGGWVPL+++D + ++HEKEWKCTNTLACLN++ + WETI ++ +D +P+ RAGH AV ++TR+YIWSGRDGYR+AWNNQ VCCKDLW+LETE+PP P+RVQLVRA T +LEV WG + TAD+Y++Q+QKY++
Sbjct: 18 RWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQ---VCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDI 402 HSP 2 Score: 259.996 bits (663), Expect = 1.045e-69 Identity = 120/220 (54.55%), Postives = 161/220 (73.18%), Query Frame = 2
Query: 3113 WYDVAMTTNTSIVVSHYYVPVEAGDDNHDNVVPEGQYKGMRKVELQPGTAFKFRVAGINVCGRGLYSDIAAFKTCVPGFPGAPCSIKITKNDVGAHLSWEPPTNSAGKILEYAVYLAVDNKKG----KEVTQTQLTFVRVYCGSTSSCTVTSETLKSAHIDFTTKPAIIFRIAAKNEKGYGPATQVRWLQDL-KDL----PENKLKRMAEARNDAAKRAK 3745
W+DV + T+++V+HY++P + + D++ Y ++K ELQPGTA+KFRVAGIN CGRG +S+I+AFKTC+PGFPGAPC+IKI+K+ GAHL+WEPP+ ++GKI+EY+VYLA+ + + K T QL F+RVYCG + SC V S +L +AHID+TTKPAIIFRIAA+NEKGYGPATQVRWLQ+ KD P NK + A K++K
Sbjct: 1812 WFDVGVIKGTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPANKRPMSSPEMKSAPKKSK 2031 The following BLAST results are available for this feature:
BLAST of TCONS_00018194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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