TCONS_00018176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018176
Unique NameTCONS_00018176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018176 ID=TCONS_00018176|Name=TCONS_00018176|organism=Clytia hemisphaerica|type=transcript|length=557bp
CAGGAAGCTGGCCCTGTTCAGCCACCAGCTGAGCAACATATGGATGTACT
TGTTGACCTTGCTGATCAAGCAGCTGTAATGCTACTTCAAAATATTGTGC
AACCAGTTCAACACCTAGAGCCACCAGCTGAACCCCAAGCACCACAAGCC
CAGCCTCAAGGTCCACCCGCTCAACATCCAGGGCCACTGTTTCAACACCA
AGGACCACCGCCCATAGTGCCAGTAGAGGTTATTCAATTCGTAGAATTCG
TGATAGAAGGGGCAATCGAGCGAATCGAAACACCTGAAGAACGCCGATTC
AGAATCTACCGTCGCACGCTTCGACGCATGAAAAAGAAACCGTTAAAGAA
CAATTATCGTAAAATTCCACAATTTATTGATTTACGCCCTCCGCCCGGAA
GTCCTTTTGAAGAGATGAGCATGCTTGAACTGAGTGATTTTTTCGACTCG
CGTTTCGCGGAATATGATCGTCGGTGTAGACGAAAAATGCGCTCAGATGA
TGAGGCGATCTTGAACAACGACGACGTCGAAGAAGCTGCTAACGACGCCG
AAGATGC
Run BLAST on NCBI

protein sequence of TCONS_00018176-protein

>TCONS_00018176-protein ID=TCONS_00018176-protein|Name=TCONS_00018176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
QEAGPVQPPAEQHMDVLVDLADQAAVMLLQNIVQPVQHLEPPAEPQAPQA
QPQGPPAQHPGPLFQHQGPPPIVPVEVIQFVEFVIEGAIERIETPEERRF
RIYRRTLRRMKKKPLKNNYRKIPQFIDLRPPPGSPFEEMSMLELSDFFDS
RFAEYDRRCRRKMRSDDEAILNNDDVEEAANDAED
Run BLAST on NCBI

transcript from alignment at sc0000290:129091..129647

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018176 ID=TCONS_00018176|Name=TCONS_00018176|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000290:129091..129647 (Clytia hemisphaerica)
GCATCTTCGGCGTCGTTAGCAGCTTCTTCGACGTCGTCGTTGTTCAAGAT
CGCCTCATCATCTGAGCGCATTTTTCGTCTACACCGACGATCATATTCCG
CGAAACGCGAGTCGAAAAAATCACTCAGTTCAAGCATGCTCATCTCTTCA
AAAGGACTTCCGGGCGGAGGGCGTAAATCAATAAATTGTGGAATTTTACG
ATAATTGTTCTTTAACGGTTTCTTTTTCATGCGTCGAAGCGTGCGACGGT
AGATTCTGAATCGGCGTTCTTCAGGTGTTTCGATTCGCTCGATTGCCCCT
TCTATCACGAATTCTACGAATTGAATAACCTCTACTGGCACTATGGGCGG
TGGTCCTTGGTGTTGAAACAGTGGCCCTGGATGTTGAGCGGGTGGACCTT
GAGGCTGGGCTTGTGGTGCTTGGGGTTCAGCTGGTGGCTCTAGGTGTTGA
ACTGGTTGCACAATATTTTGAAGTAGCATTACAGCTGCTTGATCAGCAAG
GTCAACAAGTACATCCATATGTTGCTCAGCTGGTGGCTGAACAGGGCCAG
CTTCCTG

Coding sequence (CDS) from alignment at sc0000290:129091..129647

>TCONS_00018176 ID=TCONS_00018176|Name=TCONS_00018176|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000290:129091..129647 (Clytia hemisphaerica)
ATCTTCGGCGTCGTTAGCAGCTTCTTCGACGTCGTCGTTGTTCAAGATCG
CCTCATCATCTGAGCGCATTTTTCGTCTACACCGACGATCATATTCCGCG
AAACGCGAGTCGAAAAAATCACTCAGTTCAAGCATGCTCATCTCTTCAAA
AGGACTTCCGGGCGGAGGGCGTAAATCAATAAATTGTGGAATTTTACGAT
AATTGTTCTTTAACGGTTTCTTTTTCATGCGTCGAAGCGTGCGACGGTAG
ATTCTGAATCGGCGTTCTTCAGGTGTTTCGATTCGCTCGATTGCCCCTTC
TATCACGAATTCTACGAATTGAATAACCTCTACTGGCACTATGGGCGGTG
GTCCTTGGTGTTGAAACAGTGGCCCTGGATGTTGAGCGGGTGGACCTTGA
GGCTGGGCTTGTGGTGCTTGGGGTTCAGCTGGTGGCTCTAGGTGTTGAAC
TGGTTGCACAATATTTTGAAGTAGCATTACAGCTGCTTGATCAGCAAGGT
CAACAAGTACATCCATATGTTGCTCAGCTGGTGGCTGAACAGGGCCAGCT
TCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010206XLOC_010206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018176-exon-sc0000290-1491911889:129091..129647TCONS_00018176-exon-sc0000290-1491911889:129091..129647Clytia hemisphaericaexon
TCONS_00018176-exon-sc0000290-1510915933:129091..129647TCONS_00018176-exon-sc0000290-1510915933:129091..129647Clytia hemisphaericaexon
TCONS_00018176-exon-sc0000290-1575043694:129091..129647TCONS_00018176-exon-sc0000290-1575043694:129091..129647Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018176-proteinTCONS_00018176-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:129091..129647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203895	0.298245	0.11543	0.11293	5.22431	5.21472	0.262139	0.981647	0.257728	0.638475	0.206573	0.475275	0.0678021	0.211239	0.231557	0.186372	0	0.0784425	0	0	0	0	0.116891	0.106271	0.109457	0.293062	0.419371	0.149188	0.113154	0.230572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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