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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018173 ID=TCONS_00018173|Name=TCONS_00018173|organism=Clytia hemisphaerica|type=transcript|length=1597bp
CAAGGTCAATGTAATTTAATGTTATGTTTGCTGTAAGCCACCCACATGTT
CAAAAACTTGCCGCAAGATGTTGTCATTATTtgcaacttttttgaaaagt
tgtcattatttcCTTTCGTCCCACACGAgagaaaatttcatttgagagac
aacatttttgagcttttgacTGTTCAAATAATGTacctccaaaaatattt
tcatccaaGAAGAAACGCAAGCCAAGAGACAGGCGGATTTTAATgggaaa
aagaaagaaactgagaaaaagatttcaaaatcttaaaactacagaaaaac
ttgttgaaattgaagtgTTACTTCAAAAATCCTTTGCTCAAGAGTGGAAA
CAGAAAGAAGCTCAAGCAACCTCTAAAATCAAATCCAATCCAAAATTCTT
TTACTCGTACGCTAATCGCTTATCGAAATCTAAACCAAAAGTTGGACCCT
TAATCGATCCAGACACTAACAAATTGACTAATGATCCCCTTTTGATGGCC
AATATCCTACAAAACCAATACAAGTCTGTCTTCACCCAACCTCTTCAAAA
TTACGACCTTCATCCGCTTGAGTCACAAATACCAACACTTGTAGATATCA
ATCTGACTATCGAggaatttgtcaaagaaattgGTACACTGTCACCAACT
TCAGCACCTGGACCTGATGGTTTTCCAGCTATTCTTCTTCTAAAAACTAA
AGATAACATTGCTCTACCACTTTCAATCATCTTGAGAAACATACTTAACA
AAGGAATCactccaaaacttttaaaaactggACATATATCCCCAGTTTAC
AAGAAAGGAAATCAGGGACTTGCTGAAAACTATAGCCCCGTTGCCCTCAC
ATCCCACGTTTCAAAggtctttgaaaagattgtacGAGCCAAGATACAGA
ATCATCTAGAAGAAAACAATCTGTATAACAATAACCAACATGGCTTTAGG
AAAGGCCGCTCATGTCTTAGTCAATTGCTTCAACACACCAAAAGACTGAT
CCATTACCTAGAGAATGGAAACAACATTGACGTTATCTATTTAGACTTCA
GTAAAGCTTTTGGTAGAGTAGACCATACCATTTTGTTACACAAGCTTCAG
AAAAATGTCATAAACGGTAAACTCCTTGAATGGATCAGATCCTTTTTGAC
TCATCGAACACAGAGAGTTTCAGTAAACTCAACCTTGTCCTCAGAAACAG
ATGTTATTTCAGGTGTGCAGCAAAGATCTGTGCTAGGACCGCTATTGTTC
CTGATCATGATTCAAGATATCGATAACAACATCCTTCATTCCATTTTGGC
ATCGTTTGCTGACGACACTTGTTTGATGAAAGAAATATCCAAACTAGAGG
ATGTTTATCATCTACAAAATGATCTAGACACTGTCTATAAGTGGACAGAA
GACAACAACATGCAGCTGAACGGTCTTAAATTTGAGCACCTTGCCTACGG
GAAAAACGATGTTCTGAAGCAAAGTTCTCGCTATTTTTCTGACACAGCAA
CGTTGATTGAAAATAAAGACGAAGTTAAAGACCTTGGAGTCACCCTAGAC
ACTCAGTTGACTTATGAGAAACATATCcaagaacaaatcaaaaaagt Run BLAST on NCBI protein sequence of TCONS_00018173-protein >TCONS_00018173-protein ID=TCONS_00018173-protein|Name=TCONS_00018173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MGKRKKLRKRFQNLKTTEKLVEIEVLLQKSFAQEWKQKEAQATSKIKSNP
KFFYSYANRLSKSKPKVGPLIDPDTNKLTNDPLLMANILQNQYKSVFTQP
LQNYDLHPLESQIPTLVDINLTIEEFVKEIGTLSPTSAPGPDGFPAILLL
KTKDNIALPLSIILRNILNKGITPKLLKTGHISPVYKKGNQGLAENYSPV
ALTSHVSKVFEKIVRAKIQNHLEENNLYNNNQHGFRKGRSCLSQLLQHTK
RLIHYLENGNNIDVIYLDFSKAFGRVDHTILLHKLQKNVINGKLLEWIRS
FLTHRTQRVSVNSTLSSETDVISGVQQRSVLGPLLFLIMIQDIDNNILHS
ILASFADDTCLMKEISKLEDVYHLQNDLDTVYKWTEDNNMQLNGLKFEHL
AYGKNDVLKQSSRYFSDTATLIENKDEVKDLGVTLDTQLTYEKHIQEQIK
K Run BLAST on NCBI transcript from alignment at sc0000290:59166..60762 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018173 ID=TCONS_00018173|Name=TCONS_00018173|organism=Clytia hemisphaerica|type=transcript|length=1597bp|location=Sequence derived from alignment at sc0000290:59166..60762 (Clytia hemisphaerica)
acttttttgatttgttcttgGATATGTTTCTCATAAGTCAACTGAGTGTC
TAGGGTGACTCCAAGGTCTTTAACTTCGTCTTTATTTTCAATCAACGTTG
CTGTGTCAGAAAAATAGCGAGAACTTTGCTTCAGAACATCGTTTTTCCCG
TAGGCAAGGTGCTCAAATTTAAGACCGTTCAGCTGCATGTTGTTGTCTTC
TGTCCACTTATAGACAGTGTCTAGATCATTTTGTAGATGATAAACATCCT
CTAGTTTGGATATTTCTTTCATCAAACAAGTGTCGTCAGCAAACGATGCC
AAAATGGAATGAAGGATGTTGTTATCGATATCTTGAATCATGATCAGGAA
CAATAGCGGTCCTAGCACAGATCTTTGCTGCACACCTGAAATAACATCTG
TTTCTGAGGACAAGGTTGAGTTTACTGAAACTCTCTGTGTTCGATGAGTC
AAAAAGGATCTGATCCATTCAAGGAGTTTACCGTTTATGACATTTTTCTG
AAGCTTGTGTAACAAAATGGTATGGTCTACTCTACCAAAAGCTTTACTGA
AGTCTAAATAGATAACGTCAATGTTGTTTCCATTCTCTAGGTAATGGATC
AGTCTTTTGGTGTGTTGAAGCAATTGACTAAGACATGAGCGGCCTTTCCT
AAAGCCATGTTGGTTATTGTTATACAGATTGTTTTCTTCTAGATGATTCT
GTATCTTGGCTCgtacaatcttttcaaagaccTTTGAAACGTGGGATGTG
AGGGCAACGGGGCTATAGTTTTCAGCAAGTCCCTGATTTCCTTTCTTGTA
AACTGGGGATATATGTccagtttttaaaagttttggagtGATTCCTTTGT
TAAGTATGTTTCTCAAGATGATTGAAAGTGGTAGAGCAATGTTATCTTTA
GTTTTTAGAAGAAGAATAGCTGGAAAACCATCAGGTCCAGGTGCTGAAGT
TGGTGACAGTGTACcaatttctttgacaaattccTCGATAGTCAGATTGA
TATCTACAAGTGTTGGTATTTGTGACTCAAGCGGATGAAGGTCGTAATTT
TGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTGTAGGATATTGGC
CATCAAAAGGGGATCATTAGTCAATTTGTTAGTGTCTGGATCGATTAAGG
GTCCAACTTTTGGTTTAGATTTCGATAAGCGATTAGCGTACGAGTAAAAG
AATTTTGGATTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTT
CCACTCTTGAGCAAAGGATTTTTGAAGTAAcacttcaatttcaacaagtt
tttctgtagttttaagattttgaaatctttttctcagtttctttcttttt
cccATTAAAATCCGCCTGTCTCTTGGCTTGCGTTTCTTCttggatgaaaa
tatttttggaggtACATTATTTGAACAgtcaaaagctcaaaaatgttgtc
tctcaaatgaaattttctcTCGTGTGGGACGAAAGgaaataatgacaact
tttcaaaaaagttgcaAATAATGACAACATCTTGCGGCAAGTTTTTGAAC
ATGTGGGTGGCTTACAGCAAACATAACATTAAATTACATTGACCTTG Coding sequence (CDS) from alignment at sc0000290:59166..60762 >TCONS_00018173 ID=TCONS_00018173|Name=TCONS_00018173|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at sc0000290:59166..60762 (Clytia hemisphaerica)
ttttttgatttgttcttgGATATGTTTCTCATAAGTCAACTGAGTGTCTA
GGGTGACTCCAAGGTCTTTAACTTCGTCTTTATTTTCAATCAACGTTGCT
GTGTCAGAAAAATAGCGAGAACTTTGCTTCAGAACATCGTTTTTCCCGTA
GGCAAGGTGCTCAAATTTAAGACCGTTCAGCTGCATGTTGTTGTCTTCTG
TCCACTTATAGACAGTGTCTAGATCATTTTGTAGATGATAAACATCCTCT
AGTTTGGATATTTCTTTCATCAAACAAGTGTCGTCAGCAAACGATGCCAA
AATGGAATGAAGGATGTTGTTATCGATATCTTGAATCATGATCAGGAACA
ATAGCGGTCCTAGCACAGATCTTTGCTGCACACCTGAAATAACATCTGTT
TCTGAGGACAAGGTTGAGTTTACTGAAACTCTCTGTGTTCGATGAGTCAA
AAAGGATCTGATCCATTCAAGGAGTTTACCGTTTATGACATTTTTCTGAA
GCTTGTGTAACAAAATGGTATGGTCTACTCTACCAAAAGCTTTACTGAAG
TCTAAATAGATAACGTCAATGTTGTTTCCATTCTCTAGGTAATGGATCAG
TCTTTTGGTGTGTTGAAGCAATTGACTAAGACATGAGCGGCCTTTCCTAA
AGCCATGTTGGTTATTGTTATACAGATTGTTTTCTTCTAGATGATTCTGT
ATCTTGGCTCgtacaatcttttcaaagaccTTTGAAACGTGGGATGTGAG
GGCAACGGGGCTATAGTTTTCAGCAAGTCCCTGATTTCCTTTCTTGTAAA
CTGGGGATATATGTccagtttttaaaagttttggagtGATTCCTTTGTTA
AGTATGTTTCTCAAGATGATTGAAAGTGGTAGAGCAATGTTATCTTTAGT
TTTTAGAAGAAGAATAGCTGGAAAACCATCAGGTCCAGGTGCTGAAGTTG
GTGACAGTGTACcaatttctttgacaaattccTCGATAGTCAGATTGATA
TCTACAAGTGTTGGTATTTGTGACTCAAGCGGATGAAGGTCGTAATTTTG
AAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTGTAGGATATTGGCCA
TCAAAAGGGGATCATTAGTCAATTTGTTAGTGTCTGGATCGATTAAGGGT
CCAACTTTTGGTTTAGATTTCGATAAGCGATTAGCGTACGAGTAAAAGAA
TTTTGGATTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTTCC
ACTCTTGAGCAAAGGATTTTTGAAGTAAcacttcaatttcaacaagtttt
tctgtagttttaagattttgaaatctttttctcagtttctttctttttcc
cAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018173-exon-sc0000290-1491911889:59166..60762 | TCONS_00018173-exon-sc0000290-1491911889:59166..60762 | Clytia hemisphaerica | exon |
| TCONS_00018173-exon-sc0000290-1510915933:59166..60762 | TCONS_00018173-exon-sc0000290-1510915933:59166..60762 | Clytia hemisphaerica | exon |
| TCONS_00018173-exon-sc0000290-1575043694:59166..60762 | TCONS_00018173-exon-sc0000290-1575043694:59166..60762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:59166..60762 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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