TCONS_00018173-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018173-protein
Unique NameTCONS_00018173-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018173-protein ID=TCONS_00018173-protein|Name=TCONS_00018173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MGKRKKLRKRFQNLKTTEKLVEIEVLLQKSFAQEWKQKEAQATSKIKSNP
KFFYSYANRLSKSKPKVGPLIDPDTNKLTNDPLLMANILQNQYKSVFTQP
LQNYDLHPLESQIPTLVDINLTIEEFVKEIGTLSPTSAPGPDGFPAILLL
KTKDNIALPLSIILRNILNKGITPKLLKTGHISPVYKKGNQGLAENYSPV
ALTSHVSKVFEKIVRAKIQNHLEENNLYNNNQHGFRKGRSCLSQLLQHTK
RLIHYLENGNNIDVIYLDFSKAFGRVDHTILLHKLQKNVINGKLLEWIRS
FLTHRTQRVSVNSTLSSETDVISGVQQRSVLGPLLFLIMIQDIDNNILHS
ILASFADDTCLMKEISKLEDVYHLQNDLDTVYKWTEDNNMQLNGLKFEHL
AYGKNDVLKQSSRYFSDTATLIENKDEVKDLGVTLDTQLTYEKHIQEQIK
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010203XLOC_010203Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018173TCONS_00018173Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 187..435
e-value: 2.7E-33
score: 115.3
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 166..435
score: 15.148
NoneNo IPR availableGENE3D3.30.70.270coord: 182..416
e-value: 9.5E-21
score: 73.7
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 179..435
e-value: 2.24592E-36
score: 132.8
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 204..304

Blast
[Close]
BLAST of TCONS_00018173-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.893e-18
Identity = 110/443 (24.83%), Postives = 193/443 (43.57%), Query Frame = 0 
Query:   34 EWKQKEAQAT-SKIKSNPKFFYSYAN-------RLSKSKPKVGPL--IDPDTNKLTNDPLLMANILQNQYKSVFTQPLQN----------YDLHPLESQIPTLVDINLTIEEFVKEIGTLSPTSAPGPDGFPAILLLKTKDNIALPLSIILRNILNKGITPKLLKTGHISPVYKKGNQGLA-ENYSPVALTSHVSKVFEKIVRAKIQNHLEENNLYNNNQHGFRKG-------RSCLSQLLQHTKRLIHYLENGNNIDVIYLDFSKAFGRVDHTILLHKLQKNVINGKLLEWIRSFLTHRTQRVSVNSTLSSETDVISGVQQRSVLGPLLFLIMIQDIDNNILHS-------------ILASFADDTCLMKEISKLEDVYHLQNDLDTVYKWTEDNNMQLNGLKFEHLAYGKNDVLKQSSRYFSDTATLIENKDEVKDLGVTL 435
            E K+ E Q T  KI  +  +F+   N       RL K K +   +  I  D   +T DP  +   ++  YK ++   L+N          Y L  L  +    ++  +T  E V  I +L    +PGPDGF A    + K+ +   L  + ++I  +GI P       I  + K G      EN+ P++L +  +K+  KI+  +IQ H+++  L +++Q GF  G       R  ++ ++QH  R     ++ N++ +I +D  KAF ++    +L  L K  I+G  L+ IR+     T  + +N        + +G +Q   L PLLF I+++ +   I                 L+ FADD  +  E      +   QN L  +  +++ +  ++N  K +   Y  N   +  S+   +    I +K  +K LG+ L
Sbjct:  346 ELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSIN-VIQHINRA----KDKNHV-IISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLE----NPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNR--QTESQIMGELPFTIASK-RIKYLGIQL 773
The following BLAST results are available for this feature:
BLAST of TCONS_00018173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF22.893e-1824.83LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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