TCONS_00018124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018124
Unique NameTCONS_00018124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018124 ID=TCONS_00018124|Name=TCONS_00018124|organism=Clytia hemisphaerica|type=transcript|length=519bp
TATGCAGCTTTGAATATGAGCAACTTAGAAATGTTTAACGCTGAAAATGG
TGATCGAACAGACAAAGTGAATGTTCTTATTGTGCTTACTGATGGGCGTA
GCAGTGGTCGAAGTCAACTTATTTCTGAATCAAATGCACTCAGGGAATCA
GGTGTCAAAGTCTTAGCAGTTGGTGTTGGTTCTGGTGTTGGTGAAGAAGA
ATTAAACATCATTGCTGGAAACTCATTGAATGTGTTCAACGTTTATGATG
CAAGCCATTTGAGTGATATTATTGAAGAAATCATACCTATCAGCTGTAAT
GagcAAATGCTGGAACTTGAATGTCAATCGTATGGATTCAAAGCAGGATT
TAGCTTATCTGGATTACAATCAAAGAATCTCCCCTACACCATTCGTTTGT
CGGGATCCAATGATTGCGGTACAATAAATAAAACGTCATCAGATCATCTC
AGTAATGGTAGAATGTGGATGTGGACCAACTATACTAGTTGTGGAGTTGA
AGCATATAACGTGGGAGAC
Run BLAST on NCBI

protein sequence of TCONS_00018124-protein

>TCONS_00018124-protein ID=TCONS_00018124-protein|Name=TCONS_00018124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
YAALNMSNLEMFNAENGDRTDKVNVLIVLTDGRSSGRSQLISESNALRES
GVKVLAVGVGSGVGEEELNIIAGNSLNVFNVYDASHLSDIIEEIIPISCN
EQMLELECQSYGFKAGFSLSGLQSKNLPYTIRLSGSNDCGTINKTSSDHL
SNGRMWMWTNYTSCGVEAYNVGD
Run BLAST on NCBI

transcript from alignment at sc0000290:21978..22905+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018124 ID=TCONS_00018124|Name=TCONS_00018124|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0000290:21978..22905+ (Clytia hemisphaerica)
TATGCAGCTTTGAATATGAGCAACTTAGAAATGTTTAACGCTGAAAATGG
TGATCGAACAGACAAAGTGAATGTAAGTGTATTTATATCTCCATAAATGG
TATATACTGTACCATTATAAATTTATTTCCCGCAACCATAAGTGATAAAG
ACGCACTAAATATCTTCTTTTTGATATGTCTGCTAAGAGATACTACCTTA
CTGCTACTGCTGCTACTATCTATTAAACTcagtaaaatttccaaatcctc
aaaagtaatgatatttttttactggatcattgctaatttttaaaacttct
cCCCATGTTTAGGTTCTTATTGTGCTTACTGATGGGCGTAGCAGTGGTCG
AAGTCAACTTATTTCTGAATCAAATGCACTCAGGGAATCAGGTGTCAAAG
TCTTAGCAGTTGGTGTTGGTTCTGGTGTTGGTGAAGAAGAATTAAACATC
ATTGCTGGAAACTCATTGAATGTGTTCAACGTTTATGATGCAAGCCATTT
GAGTGATATTATTGAAGAAATCATACCTATCAGCTGTAATGGTAGgtgga
aaatttgaaagtttagaTCACAAAGTTTAAATTTACTTGATTTGTAATTA
CGTTACCCCAACATTAAAGAAagatgttattattattattatataaatGA
TTTTCAGTTCATGCCCTTTGAATTAATCTCATTTTGAAAGCtttgttatt
tctttttcagagcAAATGCTGGAACTTGAATGTCAATCGTATGGATTCAA
AGCAGGATTTAGCTTATCTGGATTACAATCAAAGAATCTCCCCTACACCA
TTCGTTTGTCGGGATCCAATGATTGCGGTACAATAAATAAAACGTCATCA
GATCATCTCAGTAATGGTAGAATGTGGATGTGGACCAACTATACTAGTTG
TGGAGTTGAAGCATATAACGTGGGAGAC

Coding sequence (CDS) from alignment at sc0000290:21978..22905+

>TCONS_00018124 ID=TCONS_00018124|Name=TCONS_00018124|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at sc0000290:21978..22905+ (Clytia hemisphaerica)
TATGCAGCTTTGAATATGAGCAACTTAGAAATGTTTAACGCTGAAAATGG
TGATCGAACAGACAAAGTGAATGTTCTTATTGTGCTTACTGATGGGCGTA
GCAGTGGTCGAAGTCAACTTATTTCTGAATCAAATGCACTCAGGGAATCA
GGTGTCAAAGTCTTAGCAGTTGGTGTTGGTTCTGGTGTTGGTGAAGAAGA
ATTAAACATCATTGCTGGAAACTCATTGAATGTGTTCAACGTTTATGATG
CAAGCCATTTGAGTGATATTATTGAAGAAATCATACCTATCAGCTGTAAT
GagcAAATGCTGGAACTTGAATGTCAATCGTATGGATTCAAAGCAGGATT
TAGCTTATCTGGATTACAATCAAAGAATCTCCCCTACACCATTCGTTTGT
CGGGATCCAATGATTGCGGTACAATAAATAAAACGTCATCAGATCATCTC
AGTAATGGTAGAATGTGGATGTGGACCAACTATACTAGTTGTGGAGTTGA
AGCATATAACGTGGGAGACTATGCAGCTTTGAATATGAGCAACTTAGAAA
TGTTTAACGCTGAAAATGGTGATCGAACAGACAAAGTGAATGTTCTTATT
GTGCTTACTGATGGGCGTAGCAGTGGTCGAAGTCAACTTATTTCTGAATC
AAATGCACTCAGGGAATCAGGTGTCAAAGTCTTAGCAGTTGGTGTTGGTT
CTGGTGTTGGTGAAGAAGAATTAAACATCATTGCTGGAAACTCATTGAAT
GTGTTCAACGTTTATGATGCAAGCCATTTGAGTGATATTATTGAAGAAAT
CATACCTATCAGCTGTAATGagcAAATGCTGGAACTTGAATGTCAATCGT
ATGGATTCAAAGCAGGATTTAGCTTATCTGGATTACAATCAAAGAATCTC
CCCTACACCATTCGTTTGTCGGGATCCAATGATTGCGGTACAATAAATAA
AACGTCATCAGATCATCTCAGTAATGGTAGAATGTGGATGTGGACCAACT
ATACTAGTTGTGGAGTTGAAGCATATAACGTGGGAGACTATGCAGCTTTG
AATATGAGCAACTTAGAAATGTTTAACGCTGAAAATGGTGATCGAACAGA
CAAAGTGAATGTTCTTATTGTGCTTACTGATGGGCGTAGCAGTGGTCGAA
GTCAACTTATTTCTGAATCAAATGCACTCAGGGAATCAGGTGTCAAAGTC
TTAGCAGTTGGTGTTGGTTCTGGTGTTGGTGAAGAAGAATTAAACATCAT
TGCTGGAAACTCATTGAATGTGTTCAACGTTTATGATGCAAGCCATTTGA
GTGATATTATTGAAGAAATCATACCTATCAGCTGTAATGagcAAATGCTG
GAACTTGAATGTCAATCGTATGGATTCAAAGCAGGATTTAGCTTATCTGG
ATTACAATCAAAGAATCTCCCCTACACCATTCGTTTGTCGGGATCCAATG
ATTGCGGTACAATAAATAAAACGTCATCAGATCATCTCAGTAATGGTAGA
ATGTGGATGTGGACCAACTATACTAGTTGTGGAGTTGAAGCATATAACGT
GGGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010175XLOC_010175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018124-proteinTCONS_00018124-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018124-exon-sc0000290-1491911889:21978..22049TCONS_00018124-exon-sc0000290-1491911889:21978..22049Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1510915933:21978..22049TCONS_00018124-exon-sc0000290-1510915933:21978..22049Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1575043694:21978..22049TCONS_00018124-exon-sc0000290-1575043694:21978..22049Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1491911889:22290..22518TCONS_00018124-exon-sc0000290-1491911889:22290..22518Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1510915933:22290..22518TCONS_00018124-exon-sc0000290-1510915933:22290..22518Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1575043694:22290..22518TCONS_00018124-exon-sc0000290-1575043694:22290..22518Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1491911889:22688..22905TCONS_00018124-exon-sc0000290-1491911889:22688..22905Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1510915933:22688..22905TCONS_00018124-exon-sc0000290-1510915933:22688..22905Clytia hemisphaericaexon
TCONS_00018124-exon-sc0000290-1575043694:22688..22905TCONS_00018124-exon-sc0000290-1575043694:22688..22905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:21978..22905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54043	1.88335	0.518319	1.01419	16.4751	15.7045	16.2009	23.7036	23.9697	20.4403	9.61435	19.1371	1.94051	1.48474	0.812796	0.278957	0.402	1.33675	0	0.127305	17.7348	20.6752	67.5642	79.5444	92.4965	68.0587	69.7314	75.1245	0.572562	0.586194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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