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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018116 ID=TCONS_00018116|Name=TCONS_00018116|organism=Clytia hemisphaerica|type=transcript|length=1256bp
gaaaattcgCTAGGGAATATGCACGCAGACGTAGATTGAagtataaaaaa
cgaaaaaatcgaCTAGAACTCCCTTCTGGGTTTTTCAGAGAAATagtcta
aaataaataaaacagaaaTCTAATTACATCGGATAAAACAGTAGATCACC
TAGAGTGTATAAAATAAGCAAATATGTCTTAAAATACAACCCCCAAAGGG
TAGCCCCCTAAGGAGGTTAACACAGTTAAGTGTAGCGAAAGGCGCTCGAT
ACTGAATACAAATGtaatcataaaataaaataaaatggagtTTATTGGGT
CACAACTTCACATTCATTAAGACCATTTGGGAGAAGTGTTTTAAGTTTGT
ATTGCCAAAACCTCTCCCGTTCACGGGTATCTTCAAAATTTCTACCCTGG
TCGATAAGGGTAAATTCAAAATCAGAAAACCCAGAATGGCCGCGGATATC
AAAATGATTATGAAGATGTTGCTGAGAAACAATGTCAGTCTTATGCCGTT
TATTGCAGGACTTATAgtttgcaaatctagccctgaATTGAGTTGTACAG
CTACCGACATACTGAATCCCACAAGTTTTGCAAGTAAGAAGATAGACGAC
ATTAGTTGAGCTGCAATTCGGATGAACTCCTCTAATGTCATAGGTCTTAT
TCTTGTTATCTGCAAAACCTGAGGTTTTCTTGACAAAAGGACACATTTGA
CAGCGGTTTCCGTCACATCCTCCACTTGAGCCTCGGTTGCCGTCtggaga
tgaaatttttgcaCGGTCTAAAAGATCTTTGAGGCTTTTACCTCGACGAA
ATCCAATTATGGGGACATCACGGAAAACCTTTTTGTGATCTTTATCACCT
GTCAACATGATGTGTAGTTTCCTAAGCAAAACTCCAAAGTTCTGGAACGC
AGGGTGAAACGTGACAGTAAGTGTTAGTTTATATGTTTTCTCACGTTTCT
CCTGACGTAAAAGGTCCTTGCGCTTTTGTCTACGCGCATCCAGAACCTTA
GTTCTAACTAACTTCTGATCATACCCACGTTTAATCAGCCATGTCTCCAG
TTCGTTGCAACGTAAGTCGAATTCATGGGGCTCCGAGCAGATGCGATGAA
GTCTAAGAGCCTGACTGCACNTGCAACGTAAGTCGAATTCATTGGGCTCC
GAGCAGATGCGATTAAGTCTAAGAGCCTGACTGTACGGAATCGAAGTCTT
GGAGTGAATGGCATGACAGGACGAAGCATCCAGATACTGGTGAGTATCTG
TTGGCT Run BLAST on NCBI protein sequence of TCONS_00018116-protein >TCONS_00018116-protein ID=TCONS_00018116-protein|Name=TCONS_00018116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
PTDTHQYLDASSCHAIHSKTSIPYSQALRLNRICSEPNEFDLRCXCSQAL
RLHRICSEPHEFDLRCNELETWLIKRGYDQKLVRTKVLDARRQKRKDLLR
QEKREKTYKLTLTVTFHPAFQNFGVLLRKLHIMLTGDKDHKKVFRDVPII
GFRRGKSLKDLLDRAKISSPDGNRGSSGGCDGNRCQMCPFVKKTSGFADN
KNKTYDIRGVHPNCSSTNVVYLLTCKTCGIQYVGSCTTQFRARFANYKSC
NKRHKTDIVSQQHLHNHFDIRGHSGFSDFEFTLIDQGRNFEDTRERERFW
QYKLKTLLPNGLNECEVVTQ Run BLAST on NCBI transcript from alignment at sc0000287:253343..254598 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018116 ID=TCONS_00018116|Name=TCONS_00018116|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at sc0000287:253343..254598 (Clytia hemisphaerica)
AGCCAACAGATACTCACCAGTATCTGGATGCTTCGTCCTGTCATGCCATT
CACTCCAAGACTTCGATTCCGTACAGTCAGGCTCTTAGACTTAATCGCAT
CTGCTCGGAGCCCAATGAATTCGACTTACGTTGCANGTGCAGTCAGGCTC
TTAGACTTCATCGCATCTGCTCGGAGCCCCATGAATTCGACTTACGTTGC
AACGAACTGGAGACATGGCTGATTAAACGTGGGTATGATCAGAAGTTAGT
TAGAACTAAGGTTCTGGATGCGCGTAGACAAAAGCGCAAGGACCTTTTAC
GTCAGGAGAAACGTGAGAAAACATATAAACTAACACTTACTGTCACGTTT
CACCCTGCGTTCCAGAACTTTGGAGTTTTGCTTAGGAAACTACACATCAT
GTTGACAGGTGATAAAGATCACAAAAAGGTTTTCCGTGATGTCCCCATAA
TTGGATTTCGTCGAGGTAAAAGCCTCAAAGATCTTTTAGACCGtgcaaaa
atttcatctccaGACGGCAACCGAGGCTCAAGTGGAGGATGTGACGGAAA
CCGCTGTCAAATGTGTCCTTTTGTCAAGAAAACCTCAGGTTTTGCAGATA
ACAAGAATAAGACCTATGACATTAGAGGAGTTCATCCGAATTGCAGCTCA
ACTAATGTCGTCTATCTTCTTACTTGCAAAACTTGTGGGATTCAGTATGT
CGGTAGCTGTACAACTCAATtcagggctagatttgcaaacTATAAGTCCT
GCAATAAACGGCATAAGACTGACATTGTTTCTCAGCAACATCTTCATAAT
CATTTTGATATCCGCGGCCATTCTGGGTTTTCTGATTTTGAATTTACCCT
TATCGACCAGGGTAGAAATTTTGAAGATACCCGTGAACGGGAGAGGTTTT
GGCAATACAAACTTAAAACACTTCTCCCAAATGGTCTTAATGAATGTGAA
GTTGTGACCCAATAAactccattttattttattttatgattaCATTTGTA
TTCAGTATCGAGCGCCTTTCGCTACACTTAACTGTGTTAACCTCCTTAGG
GGGCTACCCTTTGGGGGTTGTATTTTAAGACATATTTGCTTATTTTATAC
ACTCTAGGTGATCTACTGTTTTATCCGATGTAATTAGAtttctgttttat
ttattttagactATTTCTCTGAAAAACCCAGAAGGGAGTTCTAGtcgatt
ttttcgttttttatactTCAATCTACGTCTGCGTGCATATTCCCTAGcga
attttc Coding sequence (CDS) from alignment at sc0000287:253343..254598 >TCONS_00018116 ID=TCONS_00018116|Name=TCONS_00018116|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000287:253343..254598 (Clytia hemisphaerica)
CCAACAGATACTCACCAGTATCTGGATGCTTCGTCCTGTCATGCCATTCA
CTCCAAGACTTCGATTCCGTACAGTCAGGCTCTTAGACTTAATCGCATCT
GCTCGGAGCCCAATGAATTCGACTTACGTTGCANGTGCAGTCAGGCTCTT
AGACTTCATCGCATCTGCTCGGAGCCCCATGAATTCGACTTACGTTGCAA
CGAACTGGAGACATGGCTGATTAAACGTGGGTATGATCAGAAGTTAGTTA
GAACTAAGGTTCTGGATGCGCGTAGACAAAAGCGCAAGGACCTTTTACGT
CAGGAGAAACGTGAGAAAACATATAAACTAACACTTACTGTCACGTTTCA
CCCTGCGTTCCAGAACTTTGGAGTTTTGCTTAGGAAACTACACATCATGT
TGACAGGTGATAAAGATCACAAAAAGGTTTTCCGTGATGTCCCCATAATT
GGATTTCGTCGAGGTAAAAGCCTCAAAGATCTTTTAGACCGtgcaaaaat
ttcatctccaGACGGCAACCGAGGCTCAAGTGGAGGATGTGACGGAAACC
GCTGTCAAATGTGTCCTTTTGTCAAGAAAACCTCAGGTTTTGCAGATAAC
AAGAATAAGACCTATGACATTAGAGGAGTTCATCCGAATTGCAGCTCAAC
TAATGTCGTCTATCTTCTTACTTGCAAAACTTGTGGGATTCAGTATGTCG
GTAGCTGTACAACTCAATtcagggctagatttgcaaacTATAAGTCCTGC
AATAAACGGCATAAGACTGACATTGTTTCTCAGCAACATCTTCATAATCA
TTTTGATATCCGCGGCCATTCTGGGTTTTCTGATTTTGAATTTACCCTTA
TCGACCAGGGTAGAAATTTTGAAGATACCCGTGAACGGGAGAGGTTTTGG
CAATACAAACTTAAAACACTTCTCCCAAATGGTCTTAATGAATGTGAAGT
TGTGACCCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018116-exon-sc0000287-1491911889:253343..254598 | TCONS_00018116-exon-sc0000287-1491911889:253343..254598 | Clytia hemisphaerica | exon |
| TCONS_00018116-exon-sc0000287-1510915933:253343..254598 | TCONS_00018116-exon-sc0000287-1510915933:253343..254598 | Clytia hemisphaerica | exon |
| TCONS_00018116-exon-sc0000287-1575043694:253343..254598 | TCONS_00018116-exon-sc0000287-1575043694:253343..254598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:253343..254598 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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