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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018111 ID=TCONS_00018111|Name=TCONS_00018111|organism=Clytia hemisphaerica|type=transcript|length=2075bp
atAAAAAGGACAGaagttaaaacaaaaaaaagacaaGAGGACAAGTTTTA
AGACTCAATTTTACAGAAAAATACAGTAGTCATGAGCACTACAATTGCGA
CGCCATTATGGCCAAGCACAACAAATATCACGACGGTAACATACGAACaa
aatacgtcactttcaacatCCGATTTTATCGTGGTTACAATCTACATCAT
AATATTAGTTTTCGGATTCTCCGGAAACTTGATAGTGGTGCATTATTTCG
GCTTCCGTAACAAAGTACGGCGCTTGTATCATATTTATCTCATCCATTTG
GCGATCGCTGATCTCATCTCGGCTACCGTGACTTCTGTTTACTTCATGCT
ATCTGTGGTTTCAGGCTACACGTGGTATTTAGGAGAATTCTCCTGTAAGC
TGATCTCTATTATCGCGCCAGTCACGGTTAACGTATCCGCCTGGTTGTTG
GTTAGTATCGCACACGAAAGGTATCGAGGTATCATAAGTCCTTTTAAGCC
TCGATTAACCAAACTAAGAATTCATTTAACGGTAGCTGCAATCTGGTTTG
TGTCCTTTCTGATCTTAACACCCTACGCCCTCTCAGTCCGCCTTAGTGAA
GGTTGGTGCCGAATGAGTTGGTCAAGCCCCGTTTACGAGCTGACGTACGC
CGTCGTGACGTTAGTGTTCCAAAGTCTGTTACCAATCATATATATGACTT
TTACGGTGACACGTATTTTACACGTATTACGTAACAGGATGACAGAAGGA
AACGTTCACGTAAGTACGCGATCGAAATTAAGTAATTTTTCACGGGAGAC
TTCGTTTATGTCAAATTCATTTCACacctcaacaacaacaaaatattcAT
CATCACAAGAAATACAACGTGGTGAAAAACAACACTGTACTCTAATGGAA
GAAAACTCGCCGTGTCAGCAAAATTCTCCACATTTGACGTATGAACAGCC
ATCACCAAATACGCATCGTCAGCAAAATTTATCACCCATTTCACTAAACA
GTACCATTTCACAATTACGAACAGAGTCTAAAGCAAAAACATTGAGTGTA
CCTAGTCTAGTGGTTGCTATGGAATATTctgtaaaaaataaacaaaaatt
atatgaaGTTGCTGACTGCTCTccaacaaaccttgaacctctGTTGAAAA
AAACTCAATCAGTTTTGttatcaagaaaaaaatttagccaaaatgaTTCT
CCCACGTATTTTGATATACAGAACACTTCAGAAAACAAGCAAACCAGAAG
CCGTAGCCCCTCAGTGGAGGAGACCATACCTGAGAAACCATTCAGTACAG
CTCCCTCATTTCGTCGTGGTGGTTCAGTTCGTATAACAGAACCTAGATCT
AACAGGGGTAGTATTTATCGTAAATTTTGTAAACTGTTTACATCAGACTC
AAAAACTAAAGGAAATCCGGTGCGGCAACAACAACGTATCGCAATGTTAG
TTGTGACGTTTTCCGTATTCGTAGTGTGTAGTTTGCCATATAACATGTTC
TACGTTGCTGCAATCGtcatttatgattttgtcaagGATCACACACAATT
AGATCTTTTACGACATTTTCATGTGTGGTTGTCAACTTTGGTTGTATCAA
ACTCTATAATGAATTGTTTTATCTATGCTGGTATGGATAAAGGATTTCAA
ACTTATTGTAAACGTATCATAACCTGCAAGTGTGGTCGTAAGGAAGATAT
AAGACGTATTGGTCGTGGTAGTCCAACGAGAGGCAGTATACGAAGACATT
GAAAACTttgatttatgtttttaattcgagtaccttatcggccaaaactt
agtcggccttaattttagtcggccttaattattagtcggccctaatgtta
gtcacctcgtcaaaacttagtcactaagggccgactaataattaagtttt
ggtcatttttagatttttagtcGGTCCAAATTTTGGTCGGCcttaatttt
tagtcggccctaattttagttggcccaaatttttagtcggtcctaatttt
agtcaccaagccaaaattgagtcacttagggccgactaagttttggccga
taaagtaaatgttctttttgtttcg Run BLAST on NCBI protein sequence of TCONS_00018111-protein >TCONS_00018111-protein ID=TCONS_00018111-protein|Name=TCONS_00018111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MSTTIATPLWPSTTNITTVTYEQNTSLSTSDFIVVTIYIIILVFGFSGNL
IVVHYFGFRNKVRRLYHIYLIHLAIADLISATVTSVYFMLSVVSGYTWYL
GEFSCKLISIIAPVTVNVSAWLLVSIAHERYRGIISPFKPRLTKLRIHLT
VAAIWFVSFLILTPYALSVRLSEGWCRMSWSSPVYELTYAVVTLVFQSLL
PIIYMTFTVTRILHVLRNRMTEGNVHVSTRSKLSNFSRETSFMSNSFHTS
TTTKYSSSQEIQRGEKQHCTLMEENSPCQQNSPHLTYEQPSPNTHRQQNL
SPISLNSTISQLRTESKAKTLSVPSLVVAMEYSVKNKQKLYEVADCSPTN
LEPLLKKTQSVLLSRKKFSQNDSPTYFDIQNTSENKQTRSRSPSVEETIP
EKPFSTAPSFRRGGSVRITEPRSNRGSIYRKFCKLFTSDSKTKGNPVRQQ
QRIAMLVVTFSVFVVCSLPYNMFYVAAIVIYDFVKDHTQLDLLRHFHVWL
STLVVSNSIMNCFIYAGMDKGFQTYCKRIITCKCGRKEDIRRIGRGSPTR
GSIRRH Run BLAST on NCBI transcript from alignment at sc0000287:110402..112476 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018111 ID=TCONS_00018111|Name=TCONS_00018111|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0000287:110402..112476 (Clytia hemisphaerica)
cgaaacaaaaagaacatttactttatcggccaaaacttagtcggccctaa
gtgactcaattttggcttggtgactaaaattaggaccgactaaaaatttg
ggccaactaaaattagggccgactaaaaattaagGCCGACCAAAATTTGG
ACCgactaaaaatctaaaaatgaccaaaacttaattattagtcggccctt
agtgactaagttttgacgaggtgactaacattagggccgactaataatta
aggccgactaaaattaaggccgactaagttttggccgataaggtactcga
attaaaaacataaatcaaAGTTTTCAATGTCTTCGTATACTGCCTCTCGT
TGGACTACCACGACCAATACGTCTTATATCTTCCTTACGACCACACTTGC
AGGTTATGATACGTTTACAATAAGTTTGAAATCCTTTATCCATACCAGCA
TAGATAAAACAATTCATTATAGAGTTTGATACAACCAAAGTTGACAACCA
CACATGAAAATGTCGTAAAAGATCTAATTGTGTGTGATCcttgacaaaat
cataaatgaCGATTGCAGCAACGTAGAACATGTTATATGGCAAACTACAC
ACTACGAATACGGAAAACGTCACAACTAACATTGCGATACGTTGTTGTTG
CCGCACCGGATTTCCTTTAGTTTTTGAGTCTGATGTAAACAGTTTACAAA
ATTTACGATAAATACTACCCCTGTTAGATCTAGGTTCTGTTATACGAACT
GAACCACCACGACGAAATGAGGGAGCTGTACTGAATGGTTTCTCAGGTAT
GGTCTCCTCCACTGAGGGGCTACGGCTTCTGGTTTGCTTGTTTTCTGAAG
TGTTCTGTATATCAAAATACGTGGGAGAAtcattttggctaaattttttt
cttgataaCAAAACTGATTGAGTTTTTTTCAACagaggttcaaggtttgt
tggAGAGCAGTCAGCAACttcatataatttttgtttattttttacagAAT
ATTCCATAGCAACCACTAGACTAGGTACACTCAATGTTTTTGCTTTAGAC
TCTGTTCGTAATTGTGAAATGGTACTGTTTAGTGAAATGGGTGATAAATT
TTGCTGACGATGCGTATTTGGTGATGGCTGTTCATACGTCAAATGTGGAG
AATTTTGCTGACACGGCGAGTTTTCTTCCATTAGAGTACAGTGTTGTTTT
TCACCACGTTGTATTTCTTGTGATGATgaatattttgttgttgttgaggt
GTGAAATGAATTTGACATAAACGAAGTCTCCCGTGAAAAATTACTTAATT
TCGATCGCGTACTTACGTGAACGTTTCCTTCTGTCATCCTGTTACGTAAT
ACGTGTAAAATACGTGTCACCGTAAAAGTCATATATATGATTGGTAACAG
ACTTTGGAACACTAACGTCACGACGGCGTACGTCAGCTCGTAAACGGGGC
TTGACCAACTCATTCGGCACCAACCTTCACTAAGGCGGACTGAGAGGGCG
TAGGGTGTTAAGATCAGAAAGGACACAAACCAGATTGCAGCTACCGTTAA
ATGAATTCTTAGTTTGGTTAATCGAGGCTTAAAAGGACTTATGATACCTC
GATACCTTTCGTGTGCGATACTAACCAACAACCAGGCGGATACGTTAACC
GTGACTGGCGCGATAATAGAGATCAGCTTACAGGAGAATTCTCCTAAATA
CCACGTGTAGCCTGAAACCACAGATAGCATGAAGTAAACAGAAGTCACGG
TAGCCGAGATGAGATCAGCGATCGCCAAATGGATGAGATAAATATGATAC
AAGCGCCGTACTTTGTTACGGAAGCCGAAATAATGCACCACTATCAAGTT
TCCGGAGAATCCGAAAACTAATATTATGATGTAGATTGTAACCACGATAA
AATCGGatgttgaaagtgacgtattttGTTCGTATGTTACCGTCGTGATA
TTTGTTGTGCTTGGCCATAATGGCGTCGCAATTGTAGTGCTCATGACTAC
TGTATTTTTCTGTAAAATTGAGTCTTAAAACTTGTCCTCttgtctttttt
ttgttttaacttCTGTCCTTTTTat Coding sequence (CDS) from alignment at sc0000287:110402..112476 >TCONS_00018111 ID=TCONS_00018111|Name=TCONS_00018111|organism=Clytia hemisphaerica|type=CDS|length=1671bp|location=Sequence derived from alignment at sc0000287:110402..112476 (Clytia hemisphaerica)
TCAATGTCTTCGTATACTGCCTCTCGTTGGACTACCACGACCAATACGTC
TTATATCTTCCTTACGACCACACTTGCAGGTTATGATACGTTTACAATAA
GTTTGAAATCCTTTATCCATACCAGCATAGATAAAACAATTCATTATAGA
GTTTGATACAACCAAAGTTGACAACCACACATGAAAATGTCGTAAAAGAT
CTAATTGTGTGTGATCcttgacaaaatcataaatgaCGATTGCAGCAACG
TAGAACATGTTATATGGCAAACTACACACTACGAATACGGAAAACGTCAC
AACTAACATTGCGATACGTTGTTGTTGCCGCACCGGATTTCCTTTAGTTT
TTGAGTCTGATGTAAACAGTTTACAAAATTTACGATAAATACTACCCCTG
TTAGATCTAGGTTCTGTTATACGAACTGAACCACCACGACGAAATGAGGG
AGCTGTACTGAATGGTTTCTCAGGTATGGTCTCCTCCACTGAGGGGCTAC
GGCTTCTGGTTTGCTTGTTTTCTGAAGTGTTCTGTATATCAAAATACGTG
GGAGAAtcattttggctaaatttttttcttgataaCAAAACTGATTGAGT
TTTTTTCAACagaggttcaaggtttgttggAGAGCAGTCAGCAACttcat
ataatttttgtttattttttacagAATATTCCATAGCAACCACTAGACTA
GGTACACTCAATGTTTTTGCTTTAGACTCTGTTCGTAATTGTGAAATGGT
ACTGTTTAGTGAAATGGGTGATAAATTTTGCTGACGATGCGTATTTGGTG
ATGGCTGTTCATACGTCAAATGTGGAGAATTTTGCTGACACGGCGAGTTT
TCTTCCATTAGAGTACAGTGTTGTTTTTCACCACGTTGTATTTCTTGTGA
TGATgaatattttgttgttgttgaggtGTGAAATGAATTTGACATAAACG
AAGTCTCCCGTGAAAAATTACTTAATTTCGATCGCGTACTTACGTGAACG
TTTCCTTCTGTCATCCTGTTACGTAATACGTGTAAAATACGTGTCACCGT
AAAAGTCATATATATGATTGGTAACAGACTTTGGAACACTAACGTCACGA
CGGCGTACGTCAGCTCGTAAACGGGGCTTGACCAACTCATTCGGCACCAA
CCTTCACTAAGGCGGACTGAGAGGGCGTAGGGTGTTAAGATCAGAAAGGA
CACAAACCAGATTGCAGCTACCGTTAAATGAATTCTTAGTTTGGTTAATC
GAGGCTTAAAAGGACTTATGATACCTCGATACCTTTCGTGTGCGATACTA
ACCAACAACCAGGCGGATACGTTAACCGTGACTGGCGCGATAATAGAGAT
CAGCTTACAGGAGAATTCTCCTAAATACCACGTGTAGCCTGAAACCACAG
ATAGCATGAAGTAAACAGAAGTCACGGTAGCCGAGATGAGATCAGCGATC
GCCAAATGGATGAGATAAATATGATACAAGCGCCGTACTTTGTTACGGAA
GCCGAAATAATGCACCACTATCAAGTTTCCGGAGAATCCGAAAACTAATA
TTATGATGTAGATTGTAACCACGATAAAATCGGatgttgaaagtgacgta
ttttGTTCGTATGTTACCGTCGTGATATTTGTTGTGCTTGGCCATAATGG
CGTCGCAATTGTAGTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018111-exon-sc0000287-1491911889:110402..112476 | TCONS_00018111-exon-sc0000287-1491911889:110402..112476 | Clytia hemisphaerica | exon |
| TCONS_00018111-exon-sc0000287-1510915933:110402..112476 | TCONS_00018111-exon-sc0000287-1510915933:110402..112476 | Clytia hemisphaerica | exon |
| TCONS_00018111-exon-sc0000287-1575043694:110402..112476 | TCONS_00018111-exon-sc0000287-1575043694:110402..112476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:110402..112476 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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