TCONS_00018102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018102
Unique NameTCONS_00018102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018102 ID=TCONS_00018102|Name=TCONS_00018102|organism=Clytia hemisphaerica|type=transcript|length=379bp
AGATCGTGGAAACTACTTTTGAAATAGCAGgTCGCAAATTCTCGGTCGAA
CGTATACGTCAACGCATTTTAAAGAAGACTGAAAAGTATCTACGTATTCA
TCCTGATGATTTCTTCGATAACATAACAGACGAACAACTTAAATTCGAAT
TGGCGAGATTGAATATGAATTTTTGTAGCGCACACTCACGTCAGCAACTT
GTTGGTAGCCTTAAGAAATTCAATCGGCAAAGATTTATCGTATGCTGGCA
CGACACTTCTCCGATATCTGGCTCTTCTCACTTTCTTGTTACCTTTTCTT
GTCTTTACGACCAAGCGCTGTTCATGTTAGATGAAGAGTATCTTCAAAAA
ACAGGTAATACttttcatttgaatttttg
Run BLAST on NCBI

protein sequence of TCONS_00018102-protein

>TCONS_00018102-protein ID=TCONS_00018102-protein|Name=TCONS_00018102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
IVETTFEIAGRKFSVERIRQRILKKTEKYLRIHPDDFFDNITDEQLKFEL
ARLNMNFCSAHSRQQLVGSLKKFNRQRFIVCWHDTSPISGSSHFLVTFSC
LYDQALFMLDEEYLQKTGNTFHLNF
Run BLAST on NCBI

transcript from alignment at sc0000287:344326..344925-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018102 ID=TCONS_00018102|Name=TCONS_00018102|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000287:344326..344925- (Clytia hemisphaerica)
AGATCGTGGAAACTACTTTTGAAATAGCAGGTAACCTAACCTAAGCACAG
GGTCCTATTCGACACTTTACAGTCGATTAAGTTACGTCTTTTGTTTTGAT
GATTGGTTGAATAACTGCAATCTTTATGCAAGCTCAGCGTTTTTGAAGCA
GCAATTCAGACCTCGGAAAACATATTATAAATCTGGCTTTAAATCATAAA
CTGCATTTATTTACAGTCTCAGTTTCATTCTGTGAACTTTTTTTCTGAAA
GGTCGCAAATTCTCGGTCGAACGTATACGTCAACGCATTTTAAAGAAGAC
TGAAAAGTATCTACGTATTCATCCTGATGATTTCTTCGATAACATAACAG
ACGAACAACTTAAATTCGAATTGGCGAGATTGAATATGAATTTTTGTAGC
GCACACTCACGTCAGCAACTTGTTGGTAGCCTTAAGAAATTCAATCGGCA
AAGATTTATCGTATGCTGGCACGACACTTCTCCGATATCTGGCTCTTCTC
ACTTTCTTGTTACCTTTTCTTGTCTTTACGACCAAGCGCTGTTCATGTTA
GATGAAGAGTATCTTCAAAAAACAGGTAATACTTTTCATTTGAATTTTTG

Coding sequence (CDS) from alignment at sc0000287:344326..344925-

>TCONS_00018102 ID=TCONS_00018102|Name=TCONS_00018102|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000287:344326..344925- (Clytia hemisphaerica)
GTCGCAAATTCTCGGTCGAACGTATACGTCAACGCATTTTAAAGAAGACT
GAAAAGTATCTACGTATTCATCCTGATGATTTCTTCGATAACATAACAGA
CGAACAACTTAAATTCGAATTGGCGAGATTGAATATGAATTTTTGTAGCG
CACACTCACGTCAGCAACTTGTTGGTAGCCTTAAGAAATTCAATCGGCAA
AGATTTATCGTATGCTGGCACGACACTTCTCCGATATCTGGCTCTTCTCA
CTTTCTTGTTACCTTTTCTTGTCTTTACGACCAAGCGCTGTTCATGTTAG
ATGAAGAGTATCTTCAAAAAACAGGTAATACTTTTCATTTGAATTTTATC
GTGGAAACTACTTTTGAAATAGCAGGTCGCAAATTCTCGGTCGAACGTAT
ACGTCAACGCATTTTAAAGAAGACTGAAAAGTATCTACGTATTCATCCTG
ATGATTTCTTCGATAACATAACAGACGAACAACTTAAATTCGAATTGGCG
AGATTGAATATGAATTTTTGTAGCGCACACTCACGTCAGCAACTTGTTGG
TAGCCTTAAGAAATTCAATCGGCAAAGATTTATCGTATGCTGGCACGACA
CTTCTCCGATATCTGGCTCTTCTCACTTTCTTGTTACCTTTTCTTGTCTT
TACGACCAAGCGCTGTTCATGTTAGATGAAGAGTATCTTCAAAAAACAGG
TAATACTTTTCATTTGAATTTTATCGTGGAAACTACTTTTGAAATAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010153XLOC_010153Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018102-proteinTCONS_00018102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018102-exon-sc0000287-1575043694:344896..344925TCONS_00018102-exon-sc0000287-1575043694:344896..344925Clytia hemisphaericaexon
TCONS_00018102-exon-sc0000287-1575043694:344326..344674TCONS_00018102-exon-sc0000287-1575043694:344326..344674Clytia hemisphaericaexon
TCONS_00018102-exon-sc0000287-1510915933:344896..344925TCONS_00018102-exon-sc0000287-1510915933:344896..344925Clytia hemisphaericaexon
TCONS_00018102-exon-sc0000287-1510915933:344326..344674TCONS_00018102-exon-sc0000287-1510915933:344326..344674Clytia hemisphaericaexon
TCONS_00018102-exon-sc0000287-1491911889:344896..344925TCONS_00018102-exon-sc0000287-1491911889:344896..344925Clytia hemisphaericaexon
TCONS_00018102-exon-sc0000287-1491911889:344326..344674TCONS_00018102-exon-sc0000287-1491911889:344326..344674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:344326..344925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208693	0	0	0	0	0	0.536615	0	0	0	0	0	0	0	0	0	0.156665	0	0	0	0	0	0	0	0.224064	0	0.286159	0	0	0.235997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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