TCONS_00018071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018071
Unique NameTCONS_00018071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018071 ID=TCONS_00018071|Name=TCONS_00018071|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTTCAATATAAAATCAAGAAAGAAGGGCAATAGTCAACAAGAGTTTTGAA
ACATGACACGACTCATTACTTTACTTGGGCTGTTTATTGTTATTGCATat
gcATCATGTGCTTGCGTTGACAAAAACAGAAATTGCAAGGCTTGGGCTTA
CGATACACGAAATTTCTGTCAGAAAGACCAATGGGTGATCGATAACTGTC
CTTTCTCTTGTCGAAAATGTACTCCAAAAAATTGTAAAGATACAGCCCCA
ATTTGTAGGTATGCTGGTAAAAGTGATTGGTGCTCCAAAGATTGGTTTAA
AAACAGATGTCCTAAGGGATGTAAAGTTTGCTAAATAtatattctaatat
ttttaaaaataaaaacacttaaatttatatatttattcAGAAAAATAAGC
TTTATTCATTCATACTATACAACATGTTCAATGAATCTATAAGAAATCGT
TTGAAAACTTCCGCGAGTAGCAGCAGTTGGCTTGAAATACAATCCGTAGG
CTACTT
Run BLAST on NCBI

transcript from alignment at sc0000284:363765..364481-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018071 ID=TCONS_00018071|Name=TCONS_00018071|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0000284:363765..364481- (Clytia hemisphaerica)
TTTCAATATAAAATCAAGAAAGAAGGGCAATAGTCAACAAGAGTTTTGAA
ACATGACACGACTCATTACTTTACTTGGGCTGTTTATTGTTATTGCATGT
AAGTGGTTTATAATTCATTATAGGGTTGATTCCAATTTGTGATTAGGTTT
TTGACCATCCAGTGATATAAGGGGGTCACTTTTCAATAAGAAACTGCTTC
TCATCTCCCGAATCTGAAATCTTTGTTTAATTACAAAACGAAGTTTCCGA
AGATTTGCATATTGAAATTAACCACCATGCGTTTACCAGGTACAACTTTT
TTTCTTCAGATGCATCATGTGCTTGCGTTGACAAAAACAGAAATTGCAAG
GCTTGGGCTTACGATACACGAAATTTCTGTCAGAAAGACCAATGGGTGAT
CGATAACTGTCCTTTCTCTTGTCGAAAATGTACTCCAAAAAATTGTAAAG
ATACAGCCCCAATTTGTAGGTATGCTGGTAAAAGTGATTGGTGCTCCAAA
GATTGGTTTAAAAACAGATGTCCTAAGGGATGTAAAGTTTGCTAAATATA
TATTCTAATATTTTTAAAAATAAAAACACTTAAATTTATATATTTATTCA
GAAAAATAAGCTTTATTCATTCATACTATACAACATGTTCAATGAATCTA
TAAGAAATCGTTTGAAAACTTCCGCGAGTAGCAGCAGTTGGCTTGAAATA
CAATCCGTAGGCTACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010129XLOC_010129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018071-exon-sc0000284-1575043694:364384..364481TCONS_00018071-exon-sc0000284-1575043694:364384..364481Clytia hemisphaericaexon
TCONS_00018071-exon-sc0000284-1575043694:363765..364172TCONS_00018071-exon-sc0000284-1575043694:363765..364172Clytia hemisphaericaexon
TCONS_00018071-exon-sc0000284-1510915933:364384..364481TCONS_00018071-exon-sc0000284-1510915933:364384..364481Clytia hemisphaericaexon
TCONS_00018071-exon-sc0000284-1510915933:363765..364172TCONS_00018071-exon-sc0000284-1510915933:363765..364172Clytia hemisphaericaexon
TCONS_00018071-exon-sc0000284-1491911889:364384..364481TCONS_00018071-exon-sc0000284-1491911889:364384..364481Clytia hemisphaericaexon
TCONS_00018071-exon-sc0000284-1491911889:363765..364172TCONS_00018071-exon-sc0000284-1491911889:363765..364172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:363765..364481 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.127295	0	0	0	0	0	0	47.0437	24.027	0	0.363959	4.63184	2.38972	254.498	275.461	29.6827	25.2252	42.8252	40.6676	6.66911	11.6751	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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