TCONS_00018068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018068
Unique NameTCONS_00018068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018068 ID=TCONS_00018068|Name=TCONS_00018068|organism=Clytia hemisphaerica|type=transcript|length=1459bp
cgaaacatggcaCTGTTGATTCTCAAGTCTTTCTAACtgttatGAAATAA
ATGCTTACATAAAATGGATCATGGAGATAGTCAACATATACAATTCGTTC
AATCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGTGTTGAT
TCCATCAATAATCCGCTTCAagagaaattacaaattaagaaacaaaaatt
ggtTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAGTTCATA
CTACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTTGGATCTA
GACTACAAAAACTCTTTAgcttcttattatttatttggattAACATCTGG
ACTATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGAGTAGAC
AGAATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTTGGTGGT
ATGTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTCGTAcca
atattttgttttgatccCGTTATTCTTTATATGCATAGGTGAAGGAATGT
GCAAAAGTTGCATCAGTGATTTTACACAGTtacaatttgatgaaaaattt
atgCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGATTGGACA
CATTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTGAGTTTA
CTGCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTAGCTGGA
CTTCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGGACGAAA
TGCATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGatgcaaaag
aaaagaaagacctACATATGGAGCAAAGAAAGAGAGCCAGTTCTTTCCAT
GAATCATACGAGGGGCGTGATTTTGTTGGCCATTGGATGGATTATGCAAA
ACATTCATTTGGTGGCTCCTTCACTGATAATCTTGTAGATCAAACAAAAG
CATTCTTCAAAATCTCATTattgtttctttctttcattccATACTGGGTT
GCTAACGCTCAAGTTTATGGTACCTTTATGTTCCAAGATTTTCATTTGCA
ACGAAAGATTGGTAACTTGCGTGTTCCTGTAACATGGATGGCTTTATTTC
ATGTAGCTTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGTTGATTGTA
CCGTTTTGTAGAAGGAAAGGCATCATCTTCACGTCACATTGGAAAATTTC
TATAGGAATGGTGTTTGGAATAGTAGCAATGATTTGCGCTGCTTTTGTTG
AACTTGTGGCTCACACTTCTGACATAAACAATCAAGGAGAAGAACTCATT
CATCAAATTGGAAATAAGAATCTGACTTTCACCGATGTTCATGTCTTGTG
GACTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGGTTCTCATCGGAT
TGACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00018068-protein

>TCONS_00018068-protein ID=TCONS_00018068-protein|Name=TCONS_00018068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MDHGDSQHIQFVQSPTERTPLLISAPSVDSINNPLQEKLQIKKQKLVYSS
ITLADIFQKSVHTTFITSFLLFTYTDLDLDYKNSLASYYLFGLTSGLFAS
FLNMNIEYILSRQNAIVGGFIIYTFGLGGMSGFTSHVDSSSPASYQYFVL
IPLFFICIGEGMCKSCISDFTQLQFDEKFMPEKLSAYLKRLFWIGHIGAF
IMILFLLGIVEFTAFELAYGLGCICLLAGLLCFMSGWNNFEVYGRNASSV
VYLVKMIVDDAKEKKDLHMEQRKRASSFHESYEGRDFVGHWMDYAKHSFG
GSFTDNLVDQTKAFFKISLLFLSFIPYWVANAQVYGTFMFQDFHLQRKIG
NLRVPVTWMALFHVASVLIFVQVLDKLIVPFCRRKGIIFTSHWKISIGMV
FGIVAMICAAFVELVAHTSDINNQGEELIHQIGNKNLTFTDVHVLWTVPQ
FCFLGISEVLIGLTG
Run BLAST on NCBI

transcript from alignment at sc0000284:248784..254964-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018068 ID=TCONS_00018068|Name=TCONS_00018068|organism=Clytia hemisphaerica|type=transcript|length=6181bp|location=Sequence derived from alignment at sc0000284:248784..254964- (Clytia hemisphaerica)
CGAAACATGGCACTGTTGATTCTCAAGTCTTTCTAACTGTTATGTAAGTA
TTTTGCTGGAACTTTGCCTTGATTAGAAAGTTCTTAAAAAAAATGAATTA
AACAGTTTTATTTTCTCATTCTCAGCCTCGGCATCTTTCTTAGATGTTTC
TTTGTTTTTAGGCATGACTGATGTTGTTATTTCTGAAACCTTGATTTCCT
AGTGTGACTATCTGTCTTTATTTTTCACAAATGCAAAATTGGTTTTTTAT
TTTTTAACTAAGAAAATATAATGTACAGAAAATACCTTATTTGATTATAA
ATGCTAAAAGATACTTCTTTGATTTGAAAATTGTTTTAGTTGTTTGAAAG
TATGACAAAAAACACCCGTCCACCCAATAACCACCCAATCATCCTAAATT
TACTTTAATTGTCCTATGACTTCCAAAAAAAAGTATTTAAAACTATAAAT
TTATAATACTTACAAGAAATAAAAAGTTTGATGCTTGATTAGTGAAATAT
TTCAATAAATTCCTAGTTTCCTTTTTCTTTGTTTATTGCACAATTTTTGC
GTCACACAAACTTTCTTGGCCGTTCGTAATAAATTATGCATTGTCAAATT
CGGTTCTCAATGGTTCTTACTGTCAAGTCAGGATTGATGGTGACGTCACC
TATAAATAAAGAAACAGGGATTCGTCCGTTTTATGCGTATATTAATTTGC
GAGATATTCTATTCGCCACGCGAGCCCACTTTTTTTAGACTAGTCAGAAT
ATATACCTCTTTTTACTCGTGGGATCGAAGGTAACTTTTCATTTTTGTTA
TTTTTAAAATGAAGCTAAGCACAACCAAAAAAACGAAACTTCAGAAAGTT
GCATATTTCCAGTGAGTAAACGATTCTGACAATTAACAAAAGTGATGATG
ATAAATTTTTTTCTGTCAGTCAAAAGTCTCTTATTGGGGGTTCTAGCCCT
AAGCCCTACGCGAGAATGAAGCGTTTGGGGTAAACAGGACAAAACTAAAA
AAAGCTGGTGTTTTGAAGCGCCTCCATGCGATCGAAATATTGCCCTTTGA
GACGGCGTGAAGAGGGATGTCGACTTTAGACAGGTAGTAACACTCACGGC
AATCTGCAATCAGATTTATCGGATTTATCGGATTTATCGGATCTATCGGA
TTTATCGGATTTATCGGATTAAAAAAATGCCTATTTTTGGTCATAAAGAA
AAATTTACGATATTTAACAAGGTGATCCTTCTTTTATCTGATAAAGAAGA
TAACAACGAATATCCAGTGAAAATTTGAGAACTCTAGCCCTTCCCAATCA
GGAATTAGCTCGCTTCCGATTTTGAGGGATCTAAAGCAGGATGAAGCAGG
ATTTTGGGGGATCTAAAATCAAACTTTTCAAAAATTTCCCGATTTTTAGT
AGTTTTTGTCATTCAATTCTCAAGACAGGCGCTTCGATTTGTTAGGCCTT
GATCATACGCTAAAGTAAAATTGATTTCTCATATGTAAATGGATCTTTGT
TTGAGGTCTGGCGAAATTCCTGGGAAATAACCTATCCAACGGTCCACAGA
TCTAGGTGGATGTCTTCTCTATTTTCTTGGGAAGCTGCTCTTAAAATTAG
TTTTTAAAGGTTGTCTTGGCTCAAATTTTTTCATCTATGGCTCAAAATTA
AGGTAGTTTTTCTAGTTTTTTAAAATGTTAATTTCATTGAAAAGCGCCGG
CTAATTTTTCATGAATCCCTAGAAGATTTGCAGCACAATTTTTTGCTTTA
CTTGTCAAGTAAACGACATATCGCTTTTGCAGCATTAATCTTTGATACTT
ATTTTGGCGGGATGCTAGTGTGACTAACAGTTAGACCAACTTAAGGTATA
ATCCATTCTTTTACACTGATGATACATTTGATGCTATCAATTTGACGTTT
TACTGCTCAAATAAGTTCCCGTTTTCGATTAAATTGAAATCGCCTTCAAA
CTTCATGAGAAAACTCTCATAATTGACATTTTATTGTTTACTAAGCTAAT
TTTATAATGAAGATTTCAAGTCACATTCTGTCATTCAATTTGAAGCATAA
AAGGTATTTATTCCTGTAAGGGCTTTTGATGCGCAAGCTAAACCGGCGTT
TGTGACAACGGGAACCGTCTAATCTATTCCGAAATTGATAGCAGACCAAG
TAAGAGGGATCTCGTCATCATTAGAAATTTTCGAACCTGCATCAACGTTT
TACGACGAAGCATACAATAAAGTGGACATAAAACGAAGTTTACCTACAAT
ATATAAAAACAGTTACGTACGAAGCAACCAAGAAAACGTAAGATAACGTG
GTTTAATCCGCCTTATACCATCACAATGTCAAAACTAATTTAGCAAAAGG
GTTCCTAAGAATTGTTGATAAAAACTTTCCAAAGAAGCATAGAATTTCAA
AAATCTTTAACCACAATACCTTAAAGTGAGTAACAGCTGTTTACTAAGCT
TTGCAAGTATAATCTCTTCCCATAATAACAAAGAGCTATCTGCCAAAGAA
ACCTCAGGAAACAAAATGTCCAACTGCTGTAAAAACAAGTAAAACCACAC
TAAGTCCTGTCTTAGTGTAAACCATGTATATGGGTCATATTCTCAACTTC
AGTTGAGCTAGAATCTGACAATGTATGTATGTGTGTATGTATGTCTGTCT
GTCCGAAAACTTTTATTTATCGTGAACATTGGATATATAATTAACTCTTC
TCTATTTTTTGAACGTAATTGAACTGAAAATGTCAGATTCTTCTTGGTAT
TGCAAAAGGATGTGGCCTCTTTTTTGATTTTTCTATAAATGCAAATGTGG
GCATCAAGGCAATGCAGCTGCAAAAAAATCCTTCTATAAAACCACTAATA
AGCCTCTTTTTCTACAGGAAATAAATGCTTACATAAAATGGATCATGGAG
ATAGTCAACATATACAATTCGTTCAATCACCAACGGAAAGAACACCCCTG
TTAATTTCTGCACCAAGTGTTGATTCCATCAATAATCCGCTTCAAGAGAA
ATTACAAATTAAGAAACAAAAATTGGTTTATTCTTCAATCACCTTAGCAG
ATATTTTCCAGAAATCAGTTCATACTACCTTCATTACCTCATTTTTACTC
TTCANAAAAAATCCTTCTTTAAAACCACTAATAAGCCTCTTTTTCTACAG
GAAATAAATGCTTACATAAAATGGATCATGGAGATAGTCAACATATACAA
TTCGTTCAATCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAG
TGTTGATTCCATCAATAATCCGCTTCAAGAGAAATTACAAATTAAGAAAC
AAAAATTGGTTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCA
GTTCATACTACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTT
GGATCTAGACTACAAAAACTCTTTAGCTTCTTATTATTTATTTGGATTAA
CATCTGGACTATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTG
AGTAGACAGAATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACT
TGGTGGTATGTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGT
CGTACCAATATTTTGTTTTGATCCCGTTATTCTTTATATGCATAGGTGAA
GGAATGTGCAAAAGTTGCATCAGTGATTTTACACAGTTACAATTTGATGA
AAAATTTATGCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGA
TTGGACACATTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTT
GAGTTTACTGCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCT
AGCTGGACTTCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATG
GACGAAATGCATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGAT
GCAAAAGAAAAGAAAGACCTACATATGGAGCAAAGAAAGAGGTCAGTTAA
AAAATAACATTATTTTGATTTTGATTTAAAGCATTGATTTAAGTTTTTGG
TGCAGAGGTTTTGTGCTTATCGGTTCTTTAGTCTTTAGTACACTTTCGAT
TCAACCATTCTGTGTCTAGCTTTCTAATTCACAGAAAGTAGATCCTTTTA
AAAGCATTGCTCCAAAACATTTTGATCTGTAAACTTCTTAAATTGAGACA
TGTTCTTTTTTAGAGCCAGTTCTTTCCATGAATCATACGAGGGGCGTGAT
TTTGTTGGCCATTGGATGGATTATGCAAAACATTCATTTGGTGGCTCCTT
CACTGATAATCTTGTAGATCAAACAAAAGCATTCTTCAAAATCTCATTAT
TGTTTCTTTCTTTCATTCCATACTGGGTTGCTAACGCTCAAGTAAGTTAC
CTTACAGTAAATCAATATTCCGGAGCGGGATGATTATATGGGTGCCGGAT
ATGTACGAGCCATAAGAGACTCTCGAAAGTCTCTTAATAAAGAGGTACAA
AGAGAAAGTTATCTGTAAGGGCTCCAAAATTACGAAAATCTAAGATCTAC
TCTCTCAAAGGGTCATAACTTCTTGAAATTTGGACTAAAATTTGCAAATT
TTGGCTGAAATTTTGTGGATATAGTCTCTCTAATAGTCGATTTTCGAACT
TTGGCTCGGACATGCTCGTCATCTCGCAAAACCTAGTATTCCTCCAGTCA
ATGGGCATCTCCTGAAATAATCAGTGCCCCCCTGTTGAGGATATGGAATA
TCTACAAGGGAGGAGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATA
TCCAGGGGGCCTTTACTAATAAAGTATTNTTGTTTTCTATTAGATTTGAA
GCTTTTGAAATTGAGATTCACCAAAAAGATAAAAACAACTCATTCAAAAA
AAGTCTTACTGGAAAGTTCTTAAGTTCTTTCTAGCAAAGGTAACTTTGAG
CTCAGCTGAGACTTTGAATGGTGTCAGGAGCTAGCCAAACGCTCAAAGTT
TCTATTCAGTCACCTGATATGAGTCACTTTCTTGAGTTCATAAATTTTTT
CCTAAGATTCCCTCTGTTATGCCGTAAAGAAAAGGGACTCTCCCAGAAAA
TGTCTGTAAATGGGGGAGGGGGTGGAAGATATAGTGTCTGAAGGTAGTGA
AAAGTCTACAAAATTTGCCTTGTCCGGGGTGTAAACCTACTCTGTTTGGG
GATAATTTTGATTGTCCACCGGGTCAACTAATGCTTGTCATCCTTGCTTG
CTTGTAAATTTCCAAAAATTGTTATATCCTCCGTACCCCTTGTATTCAAA
TTTTTTCTGGAAAAGCCCAAGCCTGTAACAGATACTACTGAAGAGAAAAA
AAACAAAGTAAAATTTGAGCGCAAAACAATGATATACTATATTTTTCAGG
TTTATGGTACCTTTATGTTCCAAGATTTTCATTTGCAACGAAAGATTGGT
AACTTGCGTGTTCCTGTAACATGGATGGCTTTATTTCATGTAGCTTCAGT
GTTGATTTTTGTTCAAGTGTTGGATAAGTTGATTGTACCGTTTTGTAGAA
GGAAAGGCATCATCTTCACGTCACATTGGAAAATTTCTATAGGAATGGTG
TTTGGAATAGTAGCAATGATTTGCGGTATATTGTTTTTATATTTTAAAAA
CTTCCACCATCAACAAGGTTTTTTTCCAGTTTGTTCAAAATCAGAAGTTC
GAATTTTAAGAATAAAAAGACACACCCTTTCTTAGAATAAATCTTTTAAG
AAACCTTGATTTCTCACATAAAAGGTACGTTGGAATAAACAATGTAAAGC
AGGAAGATTGTGTGTGCATTCGGATAAGTTGGGATATTTTGCAACATGCT
TTGTCATTTTTGGTAGCGATAGCTTTACNCGGATAAGTTGGGATATTTTG
CAACATGCTTTGTCATTTTTGGTAGCGATAGCTTTACCATATAAATAAAA
CAAACGAAAGCGGGAGACATGGTCATTTATCTATTTCTTGAATCTTTTTT
TTTTCCACAGCTGCTTTTGTTGAACTTGTGGCTCACACTTCTGACATAAA
CAATCAAGGAGAAGAACTCATTCATCAAATTGGAAATAAGAATCTGACTT
TCACCGATGTTCATGTCTTGTGGACTGTACCGCAATTCTGTTTCCTTGGC
ATCAGCGAGGTTCTCATCGGATTGACAGGTA

Coding sequence (CDS) from alignment at sc0000284:248784..254964-

>TCONS_00018068 ID=TCONS_00018068|Name=TCONS_00018068|organism=Clytia hemisphaerica|type=CDS|length=5580bp|location=Sequence derived from alignment at sc0000284:248784..254964- (Clytia hemisphaerica)
CTGCTTTTGTTGAACTTGTGGCTCACACTTCTGACATAAACAATCAAGGA
GAAGAACTCATTCATCAAATTGGAAATAAGAATCTGACTTTCACCGATGT
TCATGTCTTGTGGACTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGG
TTCTCATCGGATTGACAGGTGTTTATGGTACCTTTATGTTCCAAGATTTT
CATTTGCAACGAAAGATTGGTAACTTGCGTGTTCCTGTAACATGGATGGC
TTTATTTCATGTAGCTTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGT
TGATTGTACCGTTTTGTAGAAGGAAAGGCATCATCTTCACGTCACATTGG
AAAATTTCTATAGGAATGGTGTTTGGAATAGTAGCAATGATTTGCGAGCC
AGTTCTTTCCATGAATCATACGAGGGGCGTGATTTTGTTGGCCATTGGAT
GGATTATGCAAAACATTCATTTGGTGGCTCCTTCACTGATAATCTTGTAG
ATCAAACAAAAGCATTCTTCAAAATCTCATTATTGTTTCTTTCTTTCATT
CCATACTGGGTTGCTAACGCTCAAATGGATCATGGAGATAGTCAACATAT
ACAATTCGTTCAATCACCAACGGAAAGAACACCCCTGTTAATTTCTGCAC
CAAGTGTTGATTCCATCAATAATCCGCTTCAAGAGAAATTACAAATTAAG
AAACAAAAATTGGTTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAA
ATCAGTTCATACTACCTTCATTACCTCATTTTTACTCTTCACATACACTG
ACTTGGATCTAGACTACAAAAACTCTTTAGCTTCTTATTATTTATTTGGA
TTAACATCTGGACTATTTGCAAGCTTTCTTAACATGAACATTGAGTATAT
ACTGAGTAGACAGAATGCAATTGTTGGTGGATTTATTATTTACACGTTTG
GACTTGGTGGTATGTCTGGCTTTACATCACATGTGGATTCATCAAGTCCT
GCGTCGTACCAATATTTTGTTTTGATCCCGTTATTCTTTATATGCATAGG
TGAAGGAATGTGCAAAAGTTGCATCAGTGATTTTACACAGTTACAATTTG
ATGAAAAATTTATGCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTT
TGGATTGGACACATTGGTGCTTTTATCATGATATTATTTTTGCTTGGTAT
TGTTGAGTTTACTGCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTC
TTCTAGCTGGACTTCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTT
TATGGACGAAATGCATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGA
TGATGCAAAAGAAAAGAAAGACCTACATATGGAGCAAAGAAAGAGCTGCT
TTTGTTGAACTTGTGGCTCACACTTCTGACATAAACAATCAAGGAGAAGA
ACTCATTCATCAAATTGGAAATAAGAATCTGACTTTCACCGATGTTCATG
TCTTGTGGACTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGGTTCTC
ATCGGATTGACAGGTGTTTATGGTACCTTTATGTTCCAAGATTTTCATTT
GCAACGAAAGATTGGTAACTTGCGTGTTCCTGTAACATGGATGGCTTTAT
TTCATGTAGCTTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGTTGATT
GTACCGTTTTGTAGAAGGAAAGGCATCATCTTCACGTCACATTGGAAAAT
TTCTATAGGAATGGTGTTTGGAATAGTAGCAATGATTTGCGAGCCAGTTC
TTTCCATGAATCATACGAGGGGCGTGATTTTGTTGGCCATTGGATGGATT
ATGCAAAACATTCATTTGGTGGCTCCTTCACTGATAATCTTGTAGATCAA
ACAAAAGCATTCTTCAAAATCTCATTATTGTTTCTTTCTTTCATTCCATA
CTGGGTTGCTAACGCTCAAATGGATCATGGAGATAGTCAACATATACAAT
TCGTTCAATCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGT
GTTGATTCCATCAATAATCCGCTTCAAGAGAAATTACAAATTAAGAAACA
AAAATTGGTTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAG
TTCATACTACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTTG
GATCTAGACTACAAAAACTCTTTAGCTTCTTATTATTTATTTGGATTAAC
ATCTGGACTATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGA
GTAGACAGAATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTT
GGTGGTATGTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTC
GTACCAATATTTTGTTTTGATCCCGTTATTCTTTATATGCATAGGTGAAG
GAATGTGCAAAAGTTGCATCAGTGATTTTACACAGTTACAATTTGATGAA
AAATTTATGCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGAT
TGGACACATTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTG
AGTTTACTGCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTA
GCTGGACTTCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGG
ACGAAATGCATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGATG
CAAAAGAAAAGAAAGACCTACATATGGAGCAAAGAAAGAGCTGCTTTTGT
TGAACTTGTGGCTCACACTTCTGACATAAACAATCAAGGAGAAGAACTCA
TTCATCAAATTGGAAATAAGAATCTGACTTTCACCGATGTTCATGTCTTG
TGGACTGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGGTTCTCATCGG
ATTGACAGGTGTTTATGGTACCTTTATGTTCCAAGATTTTCATTTGCAAC
GAAAGATTGGTAACTTGCGTGTTCCTGTAACATGGATGGCTTTATTTCAT
GTAGCTTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGTTGATTGTACC
GTTTTGTAGAAGGAAAGGCATCATCTTCACGTCACATTGGAAAATTTCTA
TAGGAATGGTGTTTGGAATAGTAGCAATGATTTGCGAGCCAGTTCTTTCC
ATGAATCATACGAGGGGCGTGATTTTGTTGGCCATTGGATGGATTATGCA
AAACATTCATTTGGTGGCTCCTTCACTGATAATCTTGTAGATCAAACAAA
AGCATTCTTCAAAATCTCATTATTGTTTCTTTCTTTCATTCCATACTGGG
TTGCTAACGCTCAAATGGATCATGGAGATAGTCAACATATACAATTCGTT
CAATCACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGTGTTGA
TTCCATCAATAATCCGCTTCAAGAGAAATTACAAATTAAGAAACAAAAAT
TGGTTTATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAGTTCAT
ACTACCTTCATTACCTCATTTTTACTCTTCACATACACTGACTTGGATCT
AGACTACAAAAACTCTTTAGCTTCTTATTATTTATTTGGATTAACATCTG
GACTATTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGAGTAGA
CAGAATGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTTGGTGG
TATGTCTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTCGTACC
AATATTTTGTTTTGATCCCGTTATTCTTTATATGCATAGGTGAAGGAATG
TGCAAAAGTTGCATCAGTGATTTTACACAGTTACAATTTGATGAAAAATT
TATGCCTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGATTGGAC
ACATTGGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTGAGTTT
ACTGCATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTAGCTGG
ACTTCTATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGGACGAA
ATGCATCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGATGCAAAA
GAAAAGAAAGACCTACATATGGAGCAAAGAAAGAGCTGCTTTTGTTGAAC
TTGTGGCTCACACTTCTGACATAAACAATCAAGGAGAAGAACTCATTCAT
CAAATTGGAAATAAGAATCTGACTTTCACCGATGTTCATGTCTTGTGGAC
TGTACCGCAATTCTGTTTCCTTGGCATCAGCGAGGTTCTCATCGGATTGA
CAGGTGTTTATGGTACCTTTATGTTCCAAGATTTTCATTTGCAACGAAAG
ATTGGTAACTTGCGTGTTCCTGTAACATGGATGGCTTTATTTCATGTAGC
TTCAGTGTTGATTTTTGTTCAAGTGTTGGATAAGTTGATTGTACCGTTTT
GTAGAAGGAAAGGCATCATCTTCACGTCACATTGGAAAATTTCTATAGGA
ATGGTGTTTGGAATAGTAGCAATGATTTGCGAGCCAGTTCTTTCCATGAA
TCATACGAGGGGCGTGATTTTGTTGGCCATTGGATGGATTATGCAAAACA
TTCATTTGGTGGCTCCTTCACTGATAATCTTGTAGATCAAACAAAAGCAT
TCTTCAAAATCTCATTATTGTTTCTTTCTTTCATTCCATACTGGGTTGCT
AACGCTCAAATGGATCATGGAGATAGTCAACATATACAATTCGTTCAATC
ACCAACGGAAAGAACACCCCTGTTAATTTCTGCACCAAGTGTTGATTCCA
TCAATAATCCGCTTCAAGAGAAATTACAAATTAAGAAACAAAAATTGGTT
TATTCTTCAATCACCTTAGCAGATATTTTCCAGAAATCAGTTCATACTAC
CTTCATTACCTCATTTTTACTCTTCACATACACTGACTTGGATCTAGACT
ACAAAAACTCTTTAGCTTCTTATTATTTATTTGGATTAACATCTGGACTA
TTTGCAAGCTTTCTTAACATGAACATTGAGTATATACTGAGTAGACAGAA
TGCAATTGTTGGTGGATTTATTATTTACACGTTTGGACTTGGTGGTATGT
CTGGCTTTACATCACATGTGGATTCATCAAGTCCTGCGTCGTACCAATAT
TTTGTTTTGATCCCGTTATTCTTTATATGCATAGGTGAAGGAATGTGCAA
AAGTTGCATCAGTGATTTTACACAGTTACAATTTGATGAAAAATTTATGC
CTGAGAAACTAAGTGCTTATTTGAAGCGATTATTTTGGATTGGACACATT
GGTGCTTTTATCATGATATTATTTTTGCTTGGTATTGTTGAGTTTACTGC
ATTTGAGTTGGCTTATGGACTTGGTTGTATTTGTCTTCTAGCTGGACTTC
TATGTTTTATGAGTGGCTGGAATAATTTTGAAGTTTATGGACGAAATGCA
TCTAGTGTTGTTTATCTGGTAAAAATGATTGTTGATGATGCAAAAGAAAA
GAAAGACCTACATATGGAGCAAAGAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010127XLOC_010127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018068-exon-sc0000284-1575043694:254922..254964TCONS_00018068-exon-sc0000284-1575043694:254922..254964Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1575043694:250974..251814TCONS_00018068-exon-sc0000284-1575043694:250974..251814Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1575043694:250574..250751TCONS_00018068-exon-sc0000284-1575043694:250574..250751Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1575043694:249340..249565TCONS_00018068-exon-sc0000284-1575043694:249340..249565Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1575043694:248784..248954TCONS_00018068-exon-sc0000284-1575043694:248784..248954Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1510915933:254922..254964TCONS_00018068-exon-sc0000284-1510915933:254922..254964Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1510915933:250974..251814TCONS_00018068-exon-sc0000284-1510915933:250974..251814Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1510915933:250574..250751TCONS_00018068-exon-sc0000284-1510915933:250574..250751Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1510915933:249340..249565TCONS_00018068-exon-sc0000284-1510915933:249340..249565Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1510915933:248784..248954TCONS_00018068-exon-sc0000284-1510915933:248784..248954Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1491911889:254922..254964TCONS_00018068-exon-sc0000284-1491911889:254922..254964Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1491911889:250974..251814TCONS_00018068-exon-sc0000284-1491911889:250974..251814Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1491911889:250574..250751TCONS_00018068-exon-sc0000284-1491911889:250574..250751Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1491911889:249340..249565TCONS_00018068-exon-sc0000284-1491911889:249340..249565Clytia hemisphaericaexon
TCONS_00018068-exon-sc0000284-1491911889:248784..248954TCONS_00018068-exon-sc0000284-1491911889:248784..248954Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018068-proteinTCONS_00018068-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:248784..254964 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.38939	8.77028	62.2967	54.7752	12.5284	8.98288	8.53861	11.1024	6.08774	5.626	8.87551	5.62193	6.67751	6.77806	6.21942	7.03112	4.4365	5.99999	4.19454	3.8829	7.26295	7.41041	10.7716	9.77914	4.29665	6.3911	4.39769	2.49204	8.13338	7.80927
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000109POT_fam
IPR020846MFS_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00018068 vs. Swiss-Prot (Human)
Match: S15A4 (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.149e-24
Identity = 92/343 (26.82%), Postives = 162/343 (47.23%), Query Frame = 1 
Query:  457 GFTSHVDSSSPASYQYFVLIPLFFICIGEGMCKSCISDFTQLQFDEKFMPEKLSAYLKRLFWIGHIGAFIMILFLLGIVEFTAFEXXXXXXXXXXXXXXXXFMSGWNNFEVYGRNASSVVYLVKMIVDDAKEKKDLHMEQR--KRASSFHESYEGRDFVGHWMDYAKHSFGGSFTDNLVDQTKAXXXXXXXXXXXXPYWVANAQVYGTFMFQDFHLQ-RKIGNLR-----VPVTWMALFHVASVLIFVQVLDKLIVPFCRRKGIIFTSHWKISIGMVFGIVAMICAAFVELVAHTSDINNQGEELIHQ-IGNKNLTFTDVHVLWTVPQFCFLGISEVLIGLTG 1458
            G  +     SPA++   VL+ L     G    K+ I+ F   Q  ++  PE    +    +W  ++GA + +  +  I +  +F   Y +  +C+    + F+ G + F     + S+   + K++      +K     Q   +    F +S +   F     D  K S GG FT+  V+  KA  KI  +FL+ IPYW    Q+  T++ Q  HL+  +I N+      +P  W+ +F    +L+ + + DKL+ P  RR G++ +S  +I++GM F    ++C+AF   +  +  +N   E+ I+Q IGN      D+ + W VPQ+  +GISE+   + G
Sbjct:  145 GPDAAARCCSPATFAGLVLVGL-----GVATVKANITPFGADQVKDR-GPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCGQSVFITKPPDGSAFTDMFKILTYSCCSQKRSGERQSNGEGIGVFQQSSKQSLF-----DSCKMSHGGPFTEEKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRRHGLLPSSLKRIAVGMFF----VMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAG 472
The following BLAST results are available for this feature:
BLAST of TCONS_00018068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S15A41.149e-2426.82Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
back to top