TCONS_00018051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018051
Unique NameTCONS_00018051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018051 ID=TCONS_00018051|Name=TCONS_00018051|organism=Clytia hemisphaerica|type=transcript|length=2291bp
AATAGAGGCAAGACCTATTTACTTTAAGACCAAGAGTATTTATTACTTTG
TTAATCACTTGTATAAATCCCTTTTCTTGAAGGGCTTAAAGCAAATAACA
AAATTCGATGTTTGGATATAAAATAAAACTGTGAATGCATGTATTTTATA
GAGAATCGGCAAAGACCAAATACTAGGCAAGATATTACCGAATCAATGAA
AAAGAGAGGTTGAAAAAAGAACTTGAGAAGAGAGAAAATTCTGAAGGAGA
GACCACTAATGACCATGGGTGAAGTGAATCCTTCTTTCGACCATGCTGAT
AAAGAGCACCATCACAGACAAGGAACATCCAAACATGCTGATTTCAAGCA
TCTTCAGGAGCATTACGATGAAATCACCGACACTAAACTCCCTGAAAATC
TACACCGTGGTGACATCACAactgttaaccgtttccttggTTACCATGAT
GCAATGATGGCTACCTGTGGAACATTCTTAGTGTTACCATTACGTAATCT
AAAGAATATGGTGAAAACGGGTGAATACGATGATTTGAAGAAGAAACATA
CGTTACCACACGATCCTATAGTTGTTGATGATTTAGCAGGCTACTTATAT
GCAATGCGTTCCGAATTCATCATGTTTTTCCTTGGTTTCCTCATCATCTG
CAACATATGGGAAACAAACATCATCCGTACAAACGTCATAAAACGATTCG
ATGACTTCATGGTTCTGCTTGGACTCTTCCAAATGGCAGCTATTGTTGTG
TTGCCTTTCTCGATCGCGTTGAACGGTGCTTACCCTAAAGAAGATATCAC
TATTGCTATAACAACCATTGTTTTGATTATCATTAATATCTTCGAGCTTA
TCATGATCCTTTATGGATTCTATTGTCCACGCTTGTTGAATATGGCTATG
AAGGACTGGAGTAATAAGGAAGTTAGAAATTTCATGCTCATCTTGTGTAT
AAAGCCAATCGTTGAAATCATCATCATTGGAATAGCTGGAGCGTTCACCT
TTTTGAATTACCGAATCTCATGGGTTCTTCTCTTCATGCTTGTTGTTGGG
CCTTTGTTTCGTAAGCTTGGGTTCTACCTTCGCCGTAAAAATGCTGGTGA
AAGTAAAACACAGAGATGTCgtttcttttatttctacaCTAAAGGTCAAA
TTAGTCGTGAAAGGGTTGAAGCAATGTCTGATGCAGCGATCGCCATTATT
GCTTGTGTTTTGATTCTTGACATCACAGTTGAGGAATTCCCTACAAAACA
CGCTGTTCATGAACAAGGCTTGGTGGCTGTTTTATCGCACATGTTAAGCG
AGTTCAGAGTTTTCTTCGGAGCATATATGGGCGTAACATCGTTGTGGTAT
GTCAACCATACTGTTTTACACCTGTTCCACACCATTGATATAGGAGCATT
GTATTTGCAAAAAATCTTCTTGGCCTTTCTGTGCTTTCTACCTATTACTA
ACAATATGGTGGTTAAGCATGGTGCTGGGAAAACTACGGAAGCCGAACGC
CAGCTTACAGTTCGATGGGTTGGTGGAATCTTTCTCGCAGCCGGTCTGAC
ACAACTTTTGATGGTCATCTGGGGATATTATCGACGAGACAAATTACTTC
ATCGTTGGGCAACTTGCACTGATAACAACCACAAAAATGAGATGAATCTA
ATACAGTTCAGATACGTTCGATTCAAAATCGCTGTCATCCCTTTCTTTTC
ACTTATCGGAATCTTCGGTTCGTTTGCACCCGGAGATATATCGTATTACA
TTCTCACTGTGTGTGTTACGTGTGTGATGGTCACCTTTCTGGTcctgaaa
tttgtttttatgaaTCACATCAACAAACCAGCCATCCTTTTCACCCATGA
TAACGGCAAAATGACAACAAGACAGAAATCCGTCGATGAGATCGAGTTAC
GTAAAGAAATGAAAGCGGAAATAGCGGATGGGAAAGTGTACGACAACGAA
AAGGAAATGGAAAGGAAGATGATCGCGGAAGCGGAAAAGAgggaaattga
agaagaaatgaAAGATGAAAAGGAGGAAGAGGCGCTGAATTAAAGGCAAA
CCATAGATGAAGAAACCCAACAAAACATTGCAATATGAAGACGTTTAAAT
ATTTACTAGTGGAGTTCGATTTCAAATATAATTAaaattgttgttgtttg
tttagTTGTCATACTTAGACCATTGTGTAAAtaagttattttaaaaattt
tgataacatcatcacttcaattttttattttcaataatcatttaaaatga
agaaaatcgaCATAGTccattttatactttttcctCTACTA
Run BLAST on NCBI

protein sequence of TCONS_00018051-protein

>TCONS_00018051-protein ID=TCONS_00018051-protein|Name=TCONS_00018051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=594bp
MTMGEVNPSFDHADKEHHHRQGTSKHADFKHLQEHYDEITDTKLPENLHR
GDITTVNRFLGYHDAMMATCGTFLVLPLRNLKNMVKTGEYDDLKKKHTLP
HDPIVVDDLAGYLYAMRSEFIMFFLGFLIICNIWETNIIRTNVIKRFDDF
MVLLGLFQMAAIVVLPFSIALNGAYPKEDITIAITTIVLIIINIFELIMI
LYGFYCPRLLNMAMKDWSNKEVRNFMLILCIKPIVEIIIIGIAGAFTFLN
YRISWVLLFMLVVGPLFRKLGFYLRRKNAGESKTQRCRFFYFYTKGQISR
ERVEAMSDAAIAIIACVLILDITVEEFPTKHAVHEQGLVAVLSHMLSEFR
VFFGAYMGVTSLWYVNHTVLHLFHTIDIGALYLQKIFLAFLCFLPITNNM
VVKHGAGKTTEAERQLTVRWVGGIFLAAGLTQLLMVIWGYYRRDKLLHRW
ATCTDNNHKNEMNLIQFRYVRFKIAVIPFFSLIGIFGSFAPGDISYYILT
VCVTCVMVTFLVLKFVFMNHINKPAILFTHDNGKMTTRQKSVDEIELRKE
MKAEIADGKVYDNEKEMERKMIAEAEKREIEEEMKDEKEEEALN
Run BLAST on NCBI

transcript from alignment at sc0000284:245226..247910+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018051 ID=TCONS_00018051|Name=TCONS_00018051|organism=Clytia hemisphaerica|type=transcript|length=2685bp|location=Sequence derived from alignment at sc0000284:245226..247910+ (Clytia hemisphaerica)
AATAGAGGCAAGACCTATTTACTTTAAGACCAAGAGTATTTATTACTTTG
TTAATCACTTGTATAAATCCCTTTTCTTGAAGGGCTTAAAGCAAATAACA
AAATTCGATGTTTGGATATAAAATAAAACTGTGAATGCATGTATTTTATA
GAGAATCGGCAAAGACCAAATACTAGGCAAGATATTACCGAATCAATGAA
AAAGAGAGGTTGAAAAAAGAACTTGAGAAGAGAGAAAATTCTGAAGGTAA
GAAAGGTTTCATTTAAGATAAAGCTTTATTGTAATAGAACATACTTCACA
AGTCTGATTGATTTAGTGCTCGGTCCAGGCTCtttcaaagaaattataaa
tGAAAAGTacgagtacacgtttttttatacaacattaaaaaattttgaag
ccttggatttttgagttttaagcctaaaaatattttcaacatgttcttat
ttttaccattttgtgagcattttttgtccattttcttaagaaattggcca
tTTTTGAGTcttaagtcttaaaatgttctttaacttgttctcaacatttt
ggccatcgaagcctcatgttcttatatagtttgttcttaataataaaaaa
acgtgtatgagaGAAGAAATGttcgttttctttttgataGGAGAGACCAC
TAATGACCATGGGTGAAGTGAATCCTTCTTTCGACCATGCTGATAAAGAG
CACCATCACAGACAAGGAACATCCAAACATGCTGATTTCAAGCATCTTCA
GGAGCATTACGATGAAATCACCGACACTAAACTCCCTGAAAATCTACACC
GTGGTGACATCACAactgttaaccgtttccttggTTACCATGATGCAATG
ATGGCTACCTGTGGAACATTCTTAGTGTTACCATTACGTAATCTAAAGAA
TATGGTGAAAACGGGTGAATACGATGATTTGAAGAAGAAACATACGTTAC
CACACGATCCTATAGTTGTTGATGATTTAGCAGGCTACTTATATGCAATG
CGTTCCGAATTCATCATGTTTTTCCTTGGTTTCCTCATCATCTGCAACAT
ATGGGAAACAAACATCATCCGTACAAACGTCATAAAACGATTCGATGACT
TCATGGTTCTGCTTGGACTCTTCCAAATGGCAGCTATTGTTGTGTTGCCT
TTCTCGATCGCGTTGAACGGTGCTTACCCTAAAGAAGATATCACTATTGC
TATAACAACCATTGTTTTGATTATCATTAATATCTTCGAGCTTATCATGA
TCCTTTATGGATTCTATTGTCCACGCTTGTTGAATATGGCTATGAAGGAC
TGGAGTAATAAGGAAGTTAGAAATTTCATGCTCATCTTGTGTATAAAGCC
AATCGTTGAAATCATCATCATTGGAATAGCTGGAGCGTTCACCTTTTTGA
ATTACCGAATCTCATGGGTTCTTCTCTTCATGCTTGTTGTTGGGCCTTTG
TTTCGTAAGCTTGGGTTCTACCTTCGCCGTAAAAATGCTGGTGAAAGTAA
AACACAGAGATGTCgtttcttttatttctacaCTAAAGGTCAAATTAGTC
GTGAAAGGGTTGAAGCAATGTCTGATGCAGCGATCGCCATTATTGCTTGT
GTTTTGATTCTTGACATCACAGTTGAGGAATTCCCTACAAAACACGCTGT
TCATGAACAAGGCTTGGTGGCTGTTTTATCGCACATGTTAAGCGAGTTCA
GAGTTTTCTTCGGAGCATATATGGGCGTAACATCGTTGTGGTATGTCAAC
CATACTGTTTTACACCTGTTCCACACCATTGATATAGGAGCATTGTATTT
GCAAAAAATCTTCTTGGCCTTTCTGTGCTTTCTACCTATTACTAACAATA
TGGTGGTTAAGCATGGTGCTGGGAAAACTACGGAAGCCGAACGCCAGCTT
ACAGTTCGATGGGTTGGTGGAATCTTTCTCGCAGCCGGTCTGACACAACT
TTTGATGGTCATCTGGGGATATTATCGACGAGACAAATTACTTCATCGTT
GGGCAACTTGCACTGATAACAACCACAAAAATGAGATGAATCTAATACAG
TTCAGATACGTTCGATTCAAAATCGCTGTCATCCCTTTCTTTTCACTTAT
CGGAATCTTCGGTTCGTTTGCACCCGGAGATATATCGTATTACATTCTCA
CTGTGTGTGTTACGTGTGTGATGGTCACCTTTCTGGTcctgaaatttgtt
tttatgaaTCACATCAACAAACCAGCCATCCTTTTCACCCATGATAACGG
CAAAATGACAACAAGACAGAAATCCGTCGATGAGATCGAGTTACGTAAAG
AAATGAAAGCGGAAATAGCGGATGGGAAAGTGTACGACAACGAAAAGGAA
ATGGAAAGGAAGATGATCGCGGAAGCGGAAAAGAgggaaattgaagaaga
aatgaAAGATGAAAAGGAGGAAGAGGCGCTGAATTAAAGGCAAACCATAG
ATGAAGAAACCCAACAAAACATTGCAATATGAAGACGTTTAAATATTTAC
TAGTGGAGTTCGATTTCAAATATAATTAaaattgttgttgtttgtttagT
TGTCATACTTAGACCATTGTGTAAAtaagttattttaaaaattttgataa
catcatcacttcaattttttattttcaataatcatttaaaatgaagaaaa
tcgaCATAGTccattttatactttttcctCTACTA

Coding sequence (CDS) from alignment at sc0000284:245226..247910+

>TCONS_00018051 ID=TCONS_00018051|Name=TCONS_00018051|organism=Clytia hemisphaerica|type=CDS|length=1785bp|location=Sequence derived from alignment at sc0000284:245226..247910+ (Clytia hemisphaerica)
ATGACCATGGGTGAAGTGAATCCTTCTTTCGACCATGCTGATAAAGAGCA
CCATCACAGACAAGGAACATCCAAACATGCTGATTTCAAGCATCTTCAGG
AGCATTACGATGAAATCACCGACACTAAACTCCCTGAAAATCTACACCGT
GGTGACATCACAactgttaaccgtttccttggTTACCATGATGCAATGAT
GGCTACCTGTGGAACATTCTTAGTGTTACCATTACGTAATCTAAAGAATA
TGGTGAAAACGGGTGAATACGATGATTTGAAGAAGAAACATACGTTACCA
CACGATCCTATAGTTGTTGATGATTTAGCAGGCTACTTATATGCAATGCG
TTCCGAATTCATCATGTTTTTCCTTGGTTTCCTCATCATCTGCAACATAT
GGGAAACAAACATCATCCGTACAAACGTCATAAAACGATTCGATGACTTC
ATGGTTCTGCTTGGACTCTTCCAAATGGCAGCTATTGTTGTGTTGCCTTT
CTCGATCGCGTTGAACGGTGCTTACCCTAAAGAAGATATCACTATTGCTA
TAACAACCATTGTTTTGATTATCATTAATATCTTCGAGCTTATCATGATC
CTTTATGGATTCTATTGTCCACGCTTGTTGAATATGGCTATGAAGGACTG
GAGTAATAAGGAAGTTAGAAATTTCATGCTCATCTTGTGTATAAAGCCAA
TCGTTGAAATCATCATCATTGGAATAGCTGGAGCGTTCACCTTTTTGAAT
TACCGAATCTCATGGGTTCTTCTCTTCATGCTTGTTGTTGGGCCTTTGTT
TCGTAAGCTTGGGTTCTACCTTCGCCGTAAAAATGCTGGTGAAAGTAAAA
CACAGAGATGTCgtttcttttatttctacaCTAAAGGTCAAATTAGTCGT
GAAAGGGTTGAAGCAATGTCTGATGCAGCGATCGCCATTATTGCTTGTGT
TTTGATTCTTGACATCACAGTTGAGGAATTCCCTACAAAACACGCTGTTC
ATGAACAAGGCTTGGTGGCTGTTTTATCGCACATGTTAAGCGAGTTCAGA
GTTTTCTTCGGAGCATATATGGGCGTAACATCGTTGTGGTATGTCAACCA
TACTGTTTTACACCTGTTCCACACCATTGATATAGGAGCATTGTATTTGC
AAAAAATCTTCTTGGCCTTTCTGTGCTTTCTACCTATTACTAACAATATG
GTGGTTAAGCATGGTGCTGGGAAAACTACGGAAGCCGAACGCCAGCTTAC
AGTTCGATGGGTTGGTGGAATCTTTCTCGCAGCCGGTCTGACACAACTTT
TGATGGTCATCTGGGGATATTATCGACGAGACAAATTACTTCATCGTTGG
GCAACTTGCACTGATAACAACCACAAAAATGAGATGAATCTAATACAGTT
CAGATACGTTCGATTCAAAATCGCTGTCATCCCTTTCTTTTCACTTATCG
GAATCTTCGGTTCGTTTGCACCCGGAGATATATCGTATTACATTCTCACT
GTGTGTGTTACGTGTGTGATGGTCACCTTTCTGGTcctgaaatttgtttt
tatgaaTCACATCAACAAACCAGCCATCCTTTTCACCCATGATAACGGCA
AAATGACAACAAGACAGAAATCCGTCGATGAGATCGAGTTACGTAAAGAA
ATGAAAGCGGAAATAGCGGATGGGAAAGTGTACGACAACGAAAAGGAAAT
GGAAAGGAAGATGATCGCGGAAGCGGAAAAGAgggaaattgaagaagaaa
tgaAAGATGAAAAGGAGGAAGAGGCGCTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010119XLOC_010119Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018051-proteinTCONS_00018051-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018051-exon-sc0000284-1491911889:245226..245471TCONS_00018051-exon-sc0000284-1491911889:245226..245471Clytia hemisphaericaexon
TCONS_00018051-exon-sc0000284-1510915933:245226..245471TCONS_00018051-exon-sc0000284-1510915933:245226..245471Clytia hemisphaericaexon
TCONS_00018051-exon-sc0000284-1575043694:245226..245471TCONS_00018051-exon-sc0000284-1575043694:245226..245471Clytia hemisphaericaexon
TCONS_00018051-exon-sc0000284-1491911889:245866..247910TCONS_00018051-exon-sc0000284-1491911889:245866..247910Clytia hemisphaericaexon
TCONS_00018051-exon-sc0000284-1510915933:245866..247910TCONS_00018051-exon-sc0000284-1510915933:245866..247910Clytia hemisphaericaexon
TCONS_00018051-exon-sc0000284-1575043694:245866..247910TCONS_00018051-exon-sc0000284-1575043694:245866..247910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:245226..247910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271623	0.195011	0.659449	0.737154	0.208013	0.199181	2.81144	3.16334	3.06397	2.07174	2.68147	2.96591	10.9678	8.32551	2.99509	3.63617	3.3942	1.97086	15.8937	10.2503	9.61659	13.6937	4.80471	7.75971	5.95881	7.79109	0.257822	0.324618	2.66271	1.83937
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010617TMEM175
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005267 potassium channel activity
Blast
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BLAST of TCONS_00018051 vs. Swiss-Prot (Human)
Match: TM175 (Endosomal/lysomomal potassium channel TMEM175 OS=Homo sapiens GN=TMEM175 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.308e-18
Identity = 99/390 (25.38%), Postives = 173/390 (44.36%), Query Frame = 1 
Query:  415 ITTVNRFLGYHDAMMATCGTFLVLPLRNLKNMVKTGEYDDLKKKHTLPHDPIVVDDLAGYLYAMRSEFIMFFLGFLIICNIWETNIIRTNVIKRFDDFMVLLGLFQMAAIVVLPFSIALNGAYPKEDXXXXXXXXXXXXXXXXXXXXXXYGFYCPRLLNMAMKDWSNKEV-RNFMLXXXXXXXXXXXXXXXAGAFTFLNYRISWVLLFMLVVGPLFRKLGFYLRRKNAG--ESKTQRCRFFYFYTKGQISRERVEAMSDXXXXXXXCVLILDITVEEFPTKHAVHEQ---GLVAVLSHMLSEFRVFFGAYMGVTSLWYVNHTV-LHLFHTIDIGALYLQKIFLAFLCFLPITNNMVVKHGAGKTTEAERQLTVRWVGGIFLAAGLTQLLM 1563
            I    R L + DA+++   T ++LP+ +   +    ++D   ++                L A R    ++ + FLI+   W  +     V+ + DD + LL L  M  I  LP++ +L   +P   + I +  + +I I + + +++ Y F+ P LL+  ++  +++ + R  +L      +    +   A  F+     +S++L+  +++ P   K+  + R +  G  E        F F     +S+ERVEA SD   AI+A +LILDI  +  P    V E+    LVA LS     F  +FG++  V  LW+ +H++ LH+        L L  + LAF+  LP+              E ER   VR    I   A + QL M
Sbjct:   30 IQCSQRMLSFSDALLSIIATVMILPVTH-TEISPEQQFDRSVQR----------------LLATR--IAVYLMTFLIVTVAWAAHTRLFQVVGKTDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFHFPHLLSPQIQRSAHRALYRRHVL---GIVLQGPALCFAAAIFSLFFVPLSYLLMVTVILLPYVSKVTGWCRDRLLGHREPSAHPVEVFSFDLHEPLSKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFAHHSLFLHVRKATRAMGL-LNTLSLAFVGGLPLAYQQTSAFARQPRDELER---VRVSCTIIFLASIFQLAM 393
The following BLAST results are available for this feature:
BLAST of TCONS_00018051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1758.308e-1825.38Endosomal/lysomomal potassium channel TMEM175 OS=H... [more]
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