|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018001 ID=TCONS_00018001|Name=TCONS_00018001|organism=Clytia hemisphaerica|type=transcript|length=2415bpRun BLAST on NCBI protein sequence of TCONS_00018001-protein >TCONS_00018001-protein ID=TCONS_00018001-protein|Name=TCONS_00018001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp FEKSGVPNLAKDDGNAETHLPLSSLFSQSDRYACLIEGKKEKCSKDDVSYRun BLAST on NCBI transcript from alignment at sc0000282:106694..116857- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018001 ID=TCONS_00018001|Name=TCONS_00018001|organism=Clytia hemisphaerica|type=transcript|length=10164bp|location=Sequence derived from alignment at sc0000282:106694..116857- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000282:106694..116857- >TCONS_00018001 ID=TCONS_00018001|Name=TCONS_00018001|organism=Clytia hemisphaerica|type=CDS|length=14094bp|location=Sequence derived from alignment at sc0000282:106694..116857- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018001 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 6.750e-38 Identity = 110/379 (29.02%), Postives = 182/379 (48.02%), Query Frame = 3
Query: 276 GPRYQPVHLYLPRRAMYQVGHKEKVT-VNHREMKIKVLSQIPYIFEVSNFLSTNETELMIDLAKERGVKERTSKVP--------NVVLVDEMEQRTFDVWDTNFDGKVSADEIGVLQNL-NGLLLTKEDIINLISLI--DKDEDGYLSFEELSNEKDDEGDWGGGIKRIKKALEKRELDRSERKRKGGHEAWVWHDEDELLAYENLYEDFHQRISKVTDIPEELVERSEPIQVLQLEENAFASCNQDSEPVVQNKACCTYGKTDCR-------ACRYMSMFVFLSDDHDGGELAFPIADNETFHWQNLNSDLLRKCELAPNTTTSKLVIKPETGKAIFWYNHEISPYTGWMGQLEARTISGITPVQGQNAWSAKMWLNI 1355
GP +P L R +VGH+ KV V R+ I+ LS P +FE+ FL+ E L+I LA+ +G+ +R+ +P + + V +++ F + D N DG + E+ L NG +T E I + + I D D DG LS +E SN ++ K + + + SE R H W++ E ++ QR+ ++T + E+VE SEP+QV++ E + DS PV + C++ K +CRYM++ +L++ GGE FP+ADN T+ +L D + + + L +KP+ G A+FWYN+ + GW+G ++ ++ G V W A W+N+
Sbjct: 101 GPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLAQMKGL-QRSQILPTEEYEEAMSTMQVSQLD--LFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMD---------LRDFHKYMRSHKAESSELVRNS-HHTWLYQGE----GAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYP-ETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNY-LPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINV 460 The following BLAST results are available for this feature:
BLAST of TCONS_00018001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.