TCONS_00018001-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018001-protein
Unique Name	TCONS_00018001-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	521

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018001-protein ID=TCONS_00018001-protein|Name=TCONS_00018001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
FEKSGVPNLAKDDGNAETHLPLSSLFSQSDRYACLIEGKKEKCSKDDVSY
MKDKFGEDVTPLQYGVTKAPNSNKMVEETVSEMNKDGKVYFGPRYQPVHL
YLPRRAMYQVGHKEKVTVNHREMKIKVLSQIPYIFEVSNFLSTNETELMI
DLAKERGVKERTSKVPNVVLVDEMEQRTFDVWDTNFDGKVSADEIGVLQN
LNGLLLTKEDIINLISLIDKDEDGYLSFEELSNEKDDEGDWGGGIKRIKK
ALEKRELDRSERKRKGGHEAWVWHDEDELLAYENLYEDFHQRISKVTDIP
EELVERSEPIQVLQLEENAFASCNQDSEPVVQNKACCTYGKTDCRACRYM
SMFVFLSDDHDGGELAFPIADNETFHWQNLNSDLLRKCELAPNTTTSKLV
IKPETGKAIFWYNHEISPYTGWMGQLEARTISGITPVQGQNAWSAKMWLN
IIGDGVHELKPWRMASNWLKSPNKKEGLIERLRNDFYREGEPYLHVFRES
YKQKRPSPQRLFEDNXGQSVV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010088	XLOC_010088	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018001	TCONS_00018001	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 177..195 e-value: 0.013 score: 14.9 coord: 216..232 e-value: 0.0041 score: 16.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 206..241 score: 9.409
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 170..205 score: 7.819
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 176..231 e-value: 1.19283E-7 score: 47.9277
None	No IPR available	GENE3D	2.60.120.620		coord: 129..453 e-value: 4.2E-18 score: 65.4
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 219..231
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 171..232

Blast

[Close]

BLAST of TCONS_00018001-protein vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.062e-39
Identity = 110/379 (29.02%), Postives = 182/379 (48.02%), Query Frame = 0

Query:   92 GPRYQPVHLYLPRRAMYQVGHKEKVT-VNHREMKIKVLSQIPYIFEVSNFLSTNETELMIDLAKERGVKERTSKVP--------NVVLVDEMEQRTFDVWDTNFDGKVSADEIGVLQNL-NGLLLTKEDIINLISLI--DKDEDGYLSFEELSNEKDDEGDWGGGIKRIKKALEKRELDRSERKRKGGHEAWVWHDEDELLAYENLYEDFHQRISKVTDIPEELVERSEPIQVLQLEENAFASCNQDSEPVVQNKACCTYGKTDCR-------ACRYMSMFVFLSDDHDGGELAFPIADNETFHWQNLNSDLLRKCELAPNTTTSKLVIKPETGKAIFWYNHEISPYTGWMGQLEARTISGITPVQGQNAWSAKMWLNI 451
            GP  +P    L R    +VGH+ KV  V  R+  I+ LS  P +FE+  FL+  E  L+I LA+ +G+ +R+  +P        + + V +++   F + D N DG +   E+     L NG  +T E I  + + I  D D DG LS +E SN           ++   K +   + + SE  R   H  W++  E       ++     QR+ ++T +  E+VE SEP+QV++  E      + DS PV   +  C++ K           +CRYM++  +L++   GGE  FP+ADN T+   +L  D +   +   +     L +KP+ G A+FWYN+ +    GW+G ++  ++ G   V     W A  W+N+
Sbjct:  101 GPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLAQMKGL-QRSQILPTEEYEEAMSTMQVSQLD--LFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMD---------LRDFHKYMRSHKAESSELVRNS-HHTWLYQGE----GAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYP-ETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNY-LPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINV 460

The following BLAST results are available for this feature:

BLAST of TCONS_00018001-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018001-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P4HTM	3.062e-39	29.02	Transmembrane prolyl 4-hydroxylase OS=Homo sapiens...	[more]

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TCONS_00018001-protein (polypeptide) - C. hemisphaerica