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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017966 ID=TCONS_00017966|Name=TCONS_00017966|organism=Clytia hemisphaerica|type=transcript|length=1751bp
CAAGTGTGTAGAGATTGTTTGATAAACGAAAATTGAAGCCGCTAGACTAC
AGGTGTTTGTAAACGAACAGAACAAACACCTgtttaaacaaaaaagaacg
ATGTTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTGCTGATCT
AATCGCATGGGTTGCGAAATTCAATAGGAATTCGCTCATGCAGTGGCTAA
TTTTGAGTGTAGTATGCCGAGTGACGAGATCTGTATCAAATGGACATGCG
CAGCAGGTGCCGCAAATTGAGGAAAATTGTTTAAATTAATGGAAAAACGT
TGAAAGATCCTCTTTTGATGATTATTATCATTGAGAGCTGTTCGTCGAAG
AAGACAAAGACAAAGACAAAGACAAAGACAACGAGACTTCACAGACTACG
AGCTGCGAGAAAAGTTAAGtgatttgttttatttcttttcatttgtttCC
ATTCTTTTGAATAGTGTTTACCATTTGCGCTAAGCAATTTGGCATCTATA
AGGTGCATCTTCGTAAGACTTCGAGTGATTTTAAAATAAGAAAGATATAT
TTTGATCTAAACTCACATTAAGGAAATAAAACGGAGAAAGTGTCGGCACT
CGATGTCATACGAAGATCTTTTTAGTCCCCTAGTGTTTGAGGGAAATCGC
CCAATGCCAGGATTAGGATCTAGACCGGAGATGTTGAGTCCAGACGGTAG
TAACCCAATAGATTCCACCNNNNTTTTAGTCCCCTAGTGTTTGAGGGAAA
TCGCCCAATGCCAGGATTAAGATCTAGACAGGAGATGTTGAGTTCAGACG
GTAGTAACCCAATAGATTCCACCCCAATCCAATCCCGGAATAGCGATGAG
ATAGTTCAGACACTTTCAAAAGCCCTTAAATACGTAACGAAGTCTAAGAA
ACCGTCTGCACCCAAGGTCACGGTCACTCCGTTTGGTGGGAGGGATGACG
AGGACCCACACCATTTCGAAAAGAGATTTCGAATCTTGAGCGAGTCTCAG
CAATGGGAAGATAAGGAGGCAATAAAGTATATGCCTCTTTATCTCGAAGA
TGCCGCGGAACGCTGGTTCGATAATCTTGCGGCCGCGGATTTGAGGGATC
TCGATCGGGTCTTCGAACTGCTAACAGATAAGTTTAAATGTTCGCTGACG
TTGTCGAAGATCCAAGAGATACGAATGAAGGGGGAAGAATCTGTTGGTGA
TTACACCAGCCGGTTCTACAAAACCTTTAGGAGGGGGAAAGCTACATATG
GGGAAAGTGTATTGATGGATTTGTACATCTCGGGCTTAACGTTAAAGCTC
CAAGAAATGGTAGTCTCGGGCGGACCTCGGTCCCTCGAAGCTGCTGAGAC
CTTAGCAAAAAAGTGTTACTCCACCATATGTAGGTCTCCCCCGACGGCAA
ATAATACGAGGGATGAAGCAGGAAGTTTAATTCGAGATTTAATCGCTCAA
TTATCAGTGAAGAAGGGTGTTGAGGGATTTGACTCAAGGAATGAGGGGAG
AGATTTTCGTCCTAGGGGGCGGGGAGGTTATTTTAGAGGAAATGACTATA
GGCAAGGTGCCGCAGGGAATAATGATAACAGAGAGTAAAGGGCGGAAAAG
CCGAAGCATGCTTTATCGATACACTGACGTAGATATTGAGGACTTAGGTG
GGGGAAAATTTAAGTGTAGGTCCAGAAAAGAACACGGGCGTGTAATTCAG
TGTCCAAAGACAGTAATTTTTGAAATGAGTGGTGAGAAACAGCAACGGGA
A Run BLAST on NCBI protein sequence of TCONS_00017966-protein >TCONS_00017966-protein ID=TCONS_00017966-protein|Name=TCONS_00017966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MPGLRSRQEMLSSDGSNPIDSTPIQSRNSDEIVQTLSKALKYVTKSKKPS
APKVTVTPFGGRDDEDPHHFEKRFRILSESQQWEDKEAIKYMPLYLEDAA
ERWFDNLAAADLRDLDRVFELLTDKFKCSLTLSKIQEIRMKGEESVGDYT
SRFYKTFRRGKATYGESVLMDLYISGLTLKLQEMVVSGGPRSLEAAETLA
KKCYSTICRSPPTANNTRDEAGSLIRDLIAQLSVKKGVEGFDSRNEGRDF
RPRGRGGYFRGNDYRQGAAGNNDNRE Run BLAST on NCBI transcript from alignment at sc0000282:23239..29522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017966 ID=TCONS_00017966|Name=TCONS_00017966|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at sc0000282:23239..29522+ (Clytia hemisphaerica)
CAAGTGTGTAGAGATTGTTTGATAAACGAAAATTGAAGCCGCTAGACTAC
AGGTGTTTGTAAACGAACAGAACAAACACCTgtttaaacaaaaaagaacg
ATGTTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTGCTGATCT
AATCGCATGGGTTGCGAAATTCAATAGGAATTCGCTCATGCAGTGGCTAA
TTTTGAGTGTAGTATGCCGAGTGACGAGATCTGTATCAAATGGACATGCG
CAGCAGGTGCCGCAAATTGAGGAAAATTGTTTAAATTAATGGAAAAACGT
TGAAAGATCCTCTTTTGATGATTATTATCATTGAGAGCTGTTCGTCGAAG
AAGACAAAGACAAAGACAAAGACAAAGACAACGAGACTTCACAGACTACG
AGCTGCGAGAAAAGTTAAGtgatttgttttatttcttttcatttgtttCC
ATTCTTTTGAATAGTGTTTACCATTTGCGCTAAGCAATTTGGCATCTATA
AGGTGCATCTTCGTAAGACTTCGAGTGATTTTAAAATAAGAAAGATATAT
TTTGATCTAAACTCACATTAAGGAAATAAAACGGAGAAAGTGTCGGCACT
CGATGTCATACGAAGATCTTTTTAGTCCCCTAGTGTTTGAGGGAAATCGC
CCAATGCCAGGATTAGGATCTAGACCGGAGATGTTGAGTCCAGACGGTAG
TAACCCAATAGATTCCACCNNNNTTTTAGTCCCCTAGTGTTTGAGGGAAA
TCGCCCAATGCCAGGATTAAGATCTAGACAGGAGATGTTGAGTTCAGACG
GTAGTAACCCAATAGATTCCACCCCAATCCAATCCCGGAATAGCGATGAG
ATAGTTCAGACACTTTCAAAAGCCCTTAAATACGTAACGAAGTCTAAGAA
ACCGTCTGCACCCAAGGTCACGGTCACTCCGTTTGGTGGGAGGGATGACG
AGGACCCACACCATTTCGAAAAGAGATTTCGAATCTTGAGCGAGTCTCAG
CAATGGGAAGATAAGGAGGCAATAAAGTATATGCCTCTTTATCTCGAAGA
TGCCGCGGAACGCTGGTTCGATAATCTTGCGGCCGCGGATTTGAGGGATC
TCGATCGGGTCTTCGAACTGCTAACAGATAAGTTTAAATGTTCGCTGACG
TTGTCGAAGATCCAAGAGATACGAATGAAGGGGGAAGAATCTGTTGGTGA
TTACACCAGCCGGTTCTACAAAACCTTTAGGAGGGGGAAAGCTACATATG
GGGAAAGTGTATTGATGGATTTGTACATCTCGGGCTTAACGTTAAAGCTC
CAAGAAATGGTAGTCTCGGGCGGACCTCGGTCCCTCGAAGCTGCTGAGAC
CTTAGCAAAAAAGTGTTACTCCACCATATGTAGGTCTCCCCCGACGGCAA
ATAATACGAGGGATGAAGCAGGAAGTTTAATTCGAGATTTAATCGCTCAA
TTATCAGTGAAGAAGGGTGTTGAGGGATTTGACTCAAGGAATGAGGGGAG
AGATTTTCGTCCTAGGGGGCGGGGAGGTTATTTTAGAGGAAATGACTATA
GGCAAGGTGCCGCAGGGAATAATGATAGCAGAAGTCGAGGCGGATTCGGA
CGAGGGATGGACAATAGGAGGTGTTTCGTTTGCAATGACACAGGACATAT
CGCACGCCGTTGCCCAAGGGGTGATGGCCAGGGTCGTGGTTCTTTGAGAG
TGTTGACGTCTAGCAACGAGGATATTTCTGCCTCAGTTGATAACGATGCG
ATTAAGAATGTTGATGCCACTCTGCAAGGTTTGTTGCCTAGAACCAGTAG
CATTCCTTTTAAACTTCATGGAGAGTGGGCTGTTCTTAGTTTGGAGGTCA
CTTTAGACGGTTTGAGAACTCACGTACTGGTGGATAGTGGCGCAAGCCAA
AGTTGTATTAGTCAAGAAATAGCCTCCACCCTACCAGACAAAGCCAAAAG
CGTCTCAAGGTCGCCTATTCTCCTGAATTTGGCGACCGATAGTACCTATA
GCCACAAGTCTAACTGCCCGTACGGAGTTCACATTCGTTGAGACCGGTGA
TACGGTCGAGATGGACTTTTTAGTAGTTGAGGAATTATCGTCCCCTATGA
TACTAGGTacggattttttgaaaaaatacaacGTCATCATTGATTATGCG
CAGAGCACTATGGAGATTTCGGACTCTAAACCCGGCGGGAGGCAAATAAA
AAGTCGTTTGAATAAGATCACTTTTGAGTCAAAGCCAGCTTTACCAGCAC
AAAAACCCCCTATTGTTGAACACGCAGATTATGTTGCTAAGGAAATGGGT
AATGAATACGTGCCTGATGACCTGAAGGAAAAATGTAGGGACTTCTTCTT
TAAACACCAGTCCGTGTTTTGTCACGATCCGAAGGATTTGACCCCCGCTA
ATCTTGAACCCTTTGAAATTAAAGTCACCACTGATACCCCAATACAGCGT
CGCCCATATCGAGCAAGTCCCGGAACAAAACGTGAAATAGAATCGCAGGT
GGAACTTCTGCTGACCACGGGAGTCATAGAGCCTTCGGAGAGTGACTATT
CCTTCCCTGTAGTGATGGCGCCTAAAAAAGATGGATGCCTACGTTTCTGT
ATAGACTATAGAAAGTTGAATCAAGTCCTTAGGGCCGAGCAATATCCCCT
ACCTTTGATACACGACAACCTGTCTGAATTTAGCGGGGTTCAATACCTTA
GTGTTGTGGACATGAGGTCGGGCTACCACCAAATCCTCCTTACCCCGAAC
TCAAGAAAGCTTACAGCTTTCTCGTGTCACATAGGTCTTTACCAGTTTAA
GACCCTACCCTTTGGGATTAAGGACGCCCCCATGGGCTTCCAGCGCCGCA
TAATGAAAGTATTCGGGCAGCCTTTGCCCGAATTCATTACCATTTACCTA
GATGACATAGTCATCAAAAGCAAGACTGCAAGTGATCACCTTGATCACCT
AAATTATACGTTCGACATTTTAGAAAGGAAAAGAATCCAAGTAAAACCTT
CAAAGTGCAAATTCTTTAGGACTTCTATCTCCTATTTGGGACATATAGTA
TCACGTGACGGGATCCAAACCGACCCCGAGAAAGTGAGAGCAATAAGTAA
CTTTCCCATACCTAAGACCACAAGAGATGTGCGCAGCTTTGTCGGTTTAG
CTACTTATTACAAGcgatttataaaaaattttgcgtcaGTTGCTAGGCCC
CTACACGTCCTTACGGGTGTTAACGCGCATTTTGTCTGGGGAGAAGCCGC
GCAGCAAAGTTTTGACAGCCTCAAAAAGAAATTAACGGAGAGCCCTGTTC
TAGCGCACCCAAATTTTAAAGAGCCGTTTTTGATCCACACGGATGCAAGC
GATAGCGCTGTAGGTGCGACCTTGTCACAAGAGATAGAAGGTCTAGAGAG
GCCTGTGGCCTATCAAGGGAGAGCCCTAATCCCAGCCGAGACGAGATACT
CTACGACGGAGCGCGAATTTTTAGCAATAGTTTTTGCACTGAAGAAGTTT
CGTCCTTATATTTTTGGCACAGCGTTCAAAGTCTTTACAGACCATGCGCC
TATAGTACCCTTAGTGCGAACAGCGGATCCAAAATCTAGATTAGCACGTT
GGATCATGACCCTGCAAGAATATAATGTCACCCTCGCTTACCGACCGGGT
AAAAAGAACGGGAATGCGGATGCCCTGTCTCGCAGGGAATATAGGGGTCT
AAATATGTTGACGACTGCATCGCAGTCCGATATTGCTAACATGCAAATGC
GAGACCTAGAATTAGTTCCGATGATCAATTACCTAAAAGACGAAAAGCTA
CCTCTAGAGGACAATGAGGCTCGGAAAGTAATCTTGAGCTGTGATCGCTA
CTTTCTTAGCGGTGAAGGGGTCTTGTTCAAATTGGACAACGAGCGCGTAG
AGTGCTCACAGCTTGTAGTTCCTGTTCAATTGAGAGAAGAGGTTTTGATT
TGGGCCCATGACTGGGTTCACCATTTTGGGGTAAATAAGACTTTCGATAA
GATAAGGAAAAAGTATGTATGGCCAGGTCTTTGGAAACAAGTTTCGAATT
GGGTGGCCTCGTGTGAGAAGTGTGCTACAAAGAAAAATCCAAACAAGATA
CCTTATCAAATGTTGTCTCTTCCAAATGCAGAAAGGTTTACTCGTTGGGG
AATCGATTGTCTCGGGCCGTTCAAACGGACTGAGCGAGACAATCGATACA
TAATCGTTTTTACAGAAATGTTTTCGAGATGGCCAGAGGCAGTACCAACT
AGCCATACCAGAGCCCCTCTGGTAGCCAGGATAATCCtcgaaaaaattgt
ctttcGATTTGGAGCCCCAACTCACCTATTATCCGATAGAGGAAAAAACT
TCCTAGCAAAGATAGTAAAAGAGATGAGTGTCGCTCTAAGAATTAAGAGG
ATCCATACCACTGCCTATCACCCCGCCACAAATGGCTTAGTAGAAAGGTT
CAACGGAACCCTTGCCAGAACCCTGGCTCAGTCAACAAATCTTAATCAGG
ATGATTGGGACTTGCACATCAAGTCAGCCCTTTTTGCGTATCGAACAACC
CCACATTCTACCACTAAGGAGACCCCTTTCTTCCTAGTCTATGGTAAGGA
TCCTCGTATGCCTCTTGATGTTGCTTTACTGCCCCCAACAAGTCTAGAGG
GTGATTTGGTAGCTCAAAAGGAGGAGCTTATTGAGGACATGAGAAGAGCG
GAAGAAATCGCAAGAGAGAATATGGAAAGGGTTCAGCAAACGAATGAGGA
AAGAAAGACCCCGAGGGAGCCTACTTTTAAGATTTGCGACTTGGTCTGGC
TTTATGTCCCTGATAGTATTAAGGGATTGTCGAATAAGCTTCGCCATAGG
TGGCACGGACCATATAGGATAGTAGGAAAGCCGTCGCCTGTAAACTTTTC
GTTAGAGATCGAAGGAAGGAAAGTGCCTGTGAATGTACATGTTTCAAGAA
TTAAACCTTATACCCATAGGGATAGGCCTACCGAGAGTATGGATGAAGTA
GAATTTTGTGACGTCCCTCTAGAGTACATCCCCCAAGATTCGATGCCTCA
CATACCAAACCCGGATGTTGAAGTAGTAGAACAAAACGAAGACGTCTACa
gagttgaaaaaattttaaagtctAGAAATAAGGCGGGAGTAAAGAGTTAT
TTGGTGAAGTGGATGGGTTATCCAAAGTCTGAGTCAACCTGGGAACCCGC
TGAAAATATTCTCGAcccaaatttgattttagattttgaaagaaagatgt
caaagaaaaaaaagggtGAATCTAGGAGCCTCAAGACTTTAGTTTTAGCT
TCTGCAGGGAACATTCCTACTCTTAGTTGGACATGGGGATTATGGTTTTT
ACTAGCATTCTTAGTGATAGGAGTAGCCCCTTTGGGTCCTAGAGAAATTG
GAGACCTATACGACTGTTCTACGATAAGACAAtcgaaagttttcaaaatt
aatcgGGTGGCCGGATGCGGAAAGCAAgttcaaaaacaattaaaagagAG
GGCGGAGATATACGTCCGGGTGAAGAAATATTTCATTAAGAAAACCCCTT
TCCCCATTTACCATTGCGAACACGTACAAGTAACCTTGActtgtaagaaa
tatttttttgggtcagaCGCAAAAAGAACATCGCAGACAGCCGTCAAAGT
TACTCCAAAACAGTGTGAAGAGGCCTATAGAAATAGAATAGCATTGGGAA
ATCATCTGTATAAGGTTAACCCCTCACTTTTTACTAGTCATACGGACGAC
CATTTCGTGTGTAAGTGGTTAGAAACGAAGTATCTATCCTTTAATCACTT
CACTTTAAGAGTTACTCAAGCGTATTTGGAGGGTAAGCAAGATAATATCC
ATCAGTCATTAACGCACTCCCATTGTCCATACAAACAAATGTATTGTCAC
CCAGAGGAAAAGCCTAAGTCCGTGGTCGTTTGGAACAACGTAACCCACGA
TAGAGACGCGTTTCACCGCCTAGGGAGATATAAAGCATACAAAATAGGTG
ATTATATTCTCATTCCGTCACTTAAAGTAGGGGGCGCTATACAGAGAGAA
GAAGCAGGTAAATACTTCCAACTAGACAATGGTCTGATACTGGAAATGGC
AGCTAGAAAGACAGAGAGTAAAGGGCGGAAAAGCCGAAGCATGCTTTATC
GATACACTGACGTAGATATTGAGGACTTAGGTGGGGGAAAATTTAAGTGT
AGGTCCAGAAAAGAACACGGGCGTGTAATTCAGTGTCCAAAGACAGTAAT
TTTTGAAATGAGTGGTGAGAAACAGCAACGGGAA Coding sequence (CDS) from alignment at sc0000282:23239..29522+ >TCONS_00017966 ID=TCONS_00017966|Name=TCONS_00017966|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at sc0000282:23239..29522+ (Clytia hemisphaerica)
ATGCCAGGATTAAGATCTAGACAGGAGATGTTGAGTTCAGACGGTAGTAA
CCCAATAGATTCCACCCCAATCCAATCCCGGAATAGCGATGAGATAGTTC
AGACACTTTCAAAAGCCCTTAAATACGTAACGAAGTCTAAGAAACCGTCT
GCACCCAAGGTCACGGTCACTCCGTTTGGTGGGAGGGATGACGAGGACCC
ACACCATTTCGAAAAGAGATTTCGAATCTTGAGCGAGTCTCAGCAATGGG
AAGATAAGGAGGCAATAAAGTATATGCCTCTTTATCTCGAAGATGCCGCG
GAACGCTGGTTCGATAATCTTGCGGCCGCGGATTTGAGGGATCTCGATCG
GGTCTTCGAACTGCTAACAGATAAGTTTAAATGTTCGCTGACGTTGTCGA
AGATCCAAGAGATACGAATGAAGGGGGAAGAATCTGTTGGTGATTACACC
AGCCGGTTCTACAAAACCTTTAGGAGGGGGAAAGCTACATATGGGGAAAG
TGTATTGATGGATTTGTACATCTCGGGCTTAACGTTAAAGCTCCAAGAAA
TGGTAGTCTCGGGCGGACCTCGGTCCCTCGAAGCTGCTGAGACCTTAGCA
AAAAAGTGTTACTCCACCATATGTAGGTCTCCCCCGACGGCAAATAATAC
GAGGGATGAAGCAGGAAGTTTAATTCGAGATTTAATCGCTCAATTATCAG
TGAAGAAGGGTGTTGAGGGATTTGACTCAAGGAATGAGGGGAGAGATTTT
CGTCCTAGGGGGCGGGGAGGTTATTTTAGAGGAAATGACTATAGGCAAGG
TGCCGCAGGGAATAATGATAACAGAGAGTAAATGCCAGGATTAAGATCTA
GACAGGAGATGTTGAGTTCAGACGGTAGTAACCCAATAGATTCCACCCCA
ATCCAATCCCGGAATAGCGATGAGATAGTTCAGACACTTTCAAAAGCCCT
TAAATACGTAACGAAGTCTAAGAAACCGTCTGCACCCAAGGTCACGGTCA
CTCCGTTTGGTGGGAGGGATGACGAGGACCCACACCATTTCGAAAAGAGA
TTTCGAATCTTGAGCGAGTCTCAGCAATGGGAAGATAAGGAGGCAATAAA
GTATATGCCTCTTTATCTCGAAGATGCCGCGGAACGCTGGTTCGATAATC
TTGCGGCCGCGGATTTGAGGGATCTCGATCGGGTCTTCGAACTGCTAACA
GATAAGTTTAAATGTTCGCTGACGTTGTCGAAGATCCAAGAGATACGAAT
GAAGGGGGAAGAATCTGTTGGTGATTACACCAGCCGGTTCTACAAAACCT
TTAGGAGGGGGAAAGCTACATATGGGGAAAGTGTATTGATGGATTTGTAC
ATCTCGGGCTTAACGTTAAAGCTCCAAGAAATGGTAGTCTCGGGCGGACC
TCGGTCCCTCGAAGCTGCTGAGACCTTAGCAAAAAAGTGTTACTCCACCA
TATGTAGGTCTCCCCCGACGGCAAATAATACGAGGGATGAAGCAGGAAGT
TTAATTCGAGATTTAATCGCTCAATTATCAGTGAAGAAGGGTGTTGAGGG
ATTTGACTCAAGGAATGAGGGGAGAGATTTTCGTCCTAGGGGGCGGGGAG
GTTATTTTAGAGGAAATGACTATAGGCAAGGTGCCGCAGGGAATAATGAT
AACAGAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017966-exon-sc0000282-1491911889:23239..24815 | TCONS_00017966-exon-sc0000282-1491911889:23239..24815 | Clytia hemisphaerica | exon |
| TCONS_00017966-exon-sc0000282-1510915933:23239..24815 | TCONS_00017966-exon-sc0000282-1510915933:23239..24815 | Clytia hemisphaerica | exon |
| TCONS_00017966-exon-sc0000282-1575043694:23239..24815 | TCONS_00017966-exon-sc0000282-1575043694:23239..24815 | Clytia hemisphaerica | exon |
| TCONS_00017966-exon-sc0000282-1491911889:29349..29522 | TCONS_00017966-exon-sc0000282-1491911889:29349..29522 | Clytia hemisphaerica | exon |
| TCONS_00017966-exon-sc0000282-1510915933:29349..29522 | TCONS_00017966-exon-sc0000282-1510915933:29349..29522 | Clytia hemisphaerica | exon |
| TCONS_00017966-exon-sc0000282-1575043694:29349..29522 | TCONS_00017966-exon-sc0000282-1575043694:29349..29522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:23239..29522 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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