|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017943 ID=TCONS_00017943|Name=TCONS_00017943|organism=Clytia hemisphaerica|type=transcript|length=830bp
AAAAGAATCTAAACAAGGATCTTCACCGTTTATCAAATAACCGGACATAC
TTTTTCGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGT
TTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTT
TTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTG
ACGCccatcaaaaatcaatttcgCTGGATGAAATTCTTAGTCAAAATGTT
GGAAGAAACTATTTCAAAAGCTCATGAAACAAATTTGACGATACAAGGAC
GAACAGCGTACAGTCCTGTTTTACTTAAAGAGGCTTGTGGAGAGCATCAA
GAATATACAAATCTAACGGATAGTACTGAATGGCTTGATCTTGGTACCGG
AATGATATCATTGTACAAGTCCGATTGGGAGGAGATAGGAGGTTTTAACG
AGGAGCTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGAT
CGTATGGTGCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTT
TTATCACATACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGT
GAAACGCTTTACGAACACACACACCACAATCAATATTTTTCCATTTCGTT
TTTGTAGCTTTTTGATTAATTATAGCaaaaacaattaacaaaattgatag
CATCACAACACGTTTCACGTAGTTTTACCGTTTCATTGTTGCAACAATAC
ATATCTAGGAAACGGACGTTTACGAGAagtattttcatttcataattttt
tttcatctgaatttttttttcttgattagN Run BLAST on NCBI transcript from alignment at sc0000279:187554..192530- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017943 ID=TCONS_00017943|Name=TCONS_00017943|organism=Clytia hemisphaerica|type=transcript|length=4977bp|location=Sequence derived from alignment at sc0000279:187554..192530- (Clytia hemisphaerica)
AAAAGAATCTAAACAAGGATCTTCACCGTTTATCAAATAACCGGACATAC
TTTTTCGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGT
TTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTT
TTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTG
ACGCCCATCAAAAATCAATTTCGCTGGATGAAATTCTTAGTCAAAATGTT
GGAAGAAACTATTTCAAAAGCTCATGAAACAAATGTAAGTTAAAAACTGC
TACATTTTTGATGAAATAAAAACCATAGTATCAGTAATCCGGTAAGTATC
CTTTAGCTAAATGGGAATAAAATGGAAGTTGTCAATCTGTGTTGTTCATA
GTTTAGAAAATCAGTTATTCCATTGGAGATGAGAATTTTTTGATGGGGAT
GTTAGATGGAGATGTGACAGATGATTGTAAAAGCATTTTATTGTCTAGCC
TATGATAATAAATCAGGAATTTTGGGTAGTCTTTTTCGAAATCTTAAGTA
CGGGCGAGATACCCTGAGTATCAGAGGTTAGTTTTTCAAAGAAAGTAGTA
ACCTCTGAAGACAAATATTAGAAATTTTATCGCGCATGTGTCAATCTAAT
CACTGTAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATGTC
TAGCAGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATGGTTACTTTTGTCTTCGCTGATTGCGCGATGAATAGAAT
CTCGATTCGTCGGCACAGCGTAAATATATGATTTTGAGCTGTGCTTTTCA
CGGTACGGGCGAGAATTATGTGGTTTCAGCCGTTCAACTTTCATTTGGCT
TTTCGATTTTGCAGGAATCTAGTGGCTTTCAGGCTATATCATCAGCGTTA
TTAAAGCTTGAGCTTGTGTATCCCCGAAATCCTATGGTCTTAAGACGAAA
GTCTATCGTTAAAACTCTATTTTTGACCCAAGTCAATGCACTTCAAAATC
GTTTGTGTTTTTCTTTAATTTGACTTTGAATTCCCCTTTTTAACATAAAT
ATTCCGACTTTGATTGTAGGATCATGGTGGTGAAATAAAATAAATCATCT
CGTTATTGTGTCGATGCATGTAATTAGTAATAGGCATTATGATGATGTAA
TAGTATCTTTCTATCTCCACAAAAGAATATCTTGTTCCATCATGGTATTT
TTAAATTATCGATGATAATTAAGATAATTATCAATTAACTCGTTTTTATT
GTATGTCATATATGATGGGCCACCGCAGTTATCCCATTCGTTTTCAGGTG
AACTTAATACTGGTTGATTACAACAGTACTGACGGTGACTACGAATCCAT
TCTCAAGAAGAGTAAATTGAATTATACCTATCTCAATCCAGTCAAGATAG
AACAGCAACAGATGAAATTCAGTAAAGTCAGAGCATTGAATTATAATATC
AAAAGTGTGAAAGATTCAAATAGTATTATATTTGTTCTGGACCTTCATTT
GATATTACCTTCTAATATGTTCGATCGGATAAGAAAAGTAAGTTCTTTGA
CCCACTACAATATCGGTCAAAATAGTATATTGAGAGTTTATCGGTCAACC
AGTATATTGAGAGTTTTGGTTAATTCCTCGTTTTCAGAAGCTCGGGCGAG
AAAGTGACTTTTAGGCTATTTCTTAGCTTTAATAGAATATTTCAATTTGG
TTGGGGTTTATAGACTTCCAGGCAATATTTTAAGCCCTATTGGGCCGTTC
TTGTACTTTTGGATATCCTCAGATTCTAAAGTCTTAAGTCTTATGTTACA
ACTCAGAGTTAAAACTCTACCCTTCCAACCCAAGTTAGAGCGATCGATTG
TGGCTATAAGATTTTGTGGGAATTTCCATTTCCATGTTATGACCGGTATT
GTACCCACTAGTCCATATTAGTTACCAAAACGAACATCAGTTTTTTCAGA
TGCCTCCTAGGTAATTTTGGTTTCCAAAAATTCTCATCTCTCAATATTTA
TTCCAATCTTCAGTTTAGGCTGCTTGCATCCTCTAATGGAATACGATTGA
ATTTTGCATAGTTCTGCGATTCTTCTATTGGAAATTTTAAAATTAGAGTT
CCGTTGCTTTTATAAAGAATTAGATAGATAGATATGCCCTNGAAATTAGA
GTTTCGTTGCTTTTATAAAGAATTAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATATGCCCTCCGATGCATCGGAATGGGTCCTACC
CACGGTGGAGTAAGAATCACAGCGCAAGCAGACACTCGAACTACACGGGA
GAACGGATGTCCTCGCATATGTAGAACCTCCTGAGTATCACGGCACACCA
CAATGTCTGAAATATCTACCCATACTCTTGTATCAGAGTTATGGTACCCA
ATTCCCCTCACATGGCATGGGTTGACCCGGGCGAAGGAGCATTCACTTGT
CAAGTGAATCGTGGTGCCACGGTGGGTATCGAACTCGAGCCTCCTGGACA
GAAGTCAAGCACGATAACCACTACACCACTACGCCTTTTATAAAGAATTA
GCATTAACATAGTGGTTAGTGTCACGAAGTTTCGATGGTGAAATTGATCA
CGTGAAGGAATTTTGGAACTTTTATAAATTCCTAATCTTTATGAATTTTC
CTTTTTTCCATTCAGTTGACGATACAAGGACGAACAGCGTACAGTCCTGT
TTTACTTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTAACGG
ATAGTACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTACAAG
TCCGATTGGGAGGAGATAGGAGGTATGAAAAACCCAATGAGAGTACATTG
CAGGCCCAGCGAAAGTGGGGAGACTGAGGAGACTTTAGCCTCCCCACTTT
GAGCAAATGAGATCTTTTTCTCGGATTCCTAGCAAATTTTATCCCATTTT
GAGTCTTCAGCATCCCCACTCTCATGGTTGTTCCGTCGGGCCTGATCGAC
TATCTTTATTTATAGTTACTAGCCATTGGGTTGCTAAAACGCAAACTGGT
GCCCGTGTATCACAAGCTTTATTCGTGTTACTAAAGGACACCAGAGAACA
TCATCTGCCGTTTTCAGAAAGCATCAAAAAGCCAATATAATACACAGGGA
ACGAGGTGGTCCCAAACGGTAGTCTGAATTGCTAGAGGATGAGCAGAAGC
CTACACAAACGGGGGCTTATTTTGTCATATCACAAAAGCTCTCTCCTCTA
GCAGCTTTTTATAGCTCTAGTTAAAAGAAACATTGAGTTTCTACGTCACA
AAAAGAAGTCTGATCCGTTATTCTGAAACATGATTCTCCAATGTTACCTT
TGAAATGCTGCTCGTGCGTCTAAGAATACATTAATAGCATTTTTCTTCTT
ACACACAGGCAGACTTTTGCTTTGTTGGGGTAGGCTAGCAAATAACAAAA
TTCTGACCAAGGAATAATTTTCATGTCTTTGATTGGCCGCGTATTACAAT
TGTTGACCAGTTTACGTATAAAACCATTTACTATATTCAATTATGGACAA
AACATTTGAGACAAAGGGAATTTCCCGGTGAAAATTTAAACACCACAAAT
GATTTTTAAGGTCTTAAGGGCTCTGGTCATAGCGAAAAATCAATTTCAGA
TTTTAAAGGAAAGATACTTCCATAAAAATTTTTCAATATTGTATTTTTAG
ATACTAAATAGATACATCACCTGAACCAAAAAAAATTCCAAAATGTTTGA
TTTTTACCGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAA
AAACTCTTCGTTTTCTTCTTCATTTAATTTTTTCATTTCAATTTTTCGAT
TTTTAAATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAATTATA
CATTAATGTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATC
GAAAAATTGTCCAGAGCCCTTAAACTACAGTTTAAATACACTTTCGACCA
TGATTGTAGTAACAAAACATATTTTCTCGATTGATTAGGTTTTAACGAGG
AGCTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGATCGT
ATGGTGCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTTTTA
TCACATACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGAA
ACGCTTTACGAACACACACACCACAATCAATATTTTTCCATTTCGTTTTT
GTAGCTTTTTGATTAATTATAGCAAAAACAATTAACAAAATTGATAGCAT
CACAACACGTTTCACGTAGTTTTACCGTTTCATTGTTGCAACAATACATA
TCTAGGAAACGGACGTTTACGAGAAGTATTTTCATTTCATAATTTTTTTT
CATCTGAATTTTTTTTTCTTGATTAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017943-exon-sc0000279-1575043694:192247..192530 | TCONS_00017943-exon-sc0000279-1575043694:192247..192530 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1575043694:189209..189365 | TCONS_00017943-exon-sc0000279-1575043694:189209..189365 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1575043694:187554..187942 | TCONS_00017943-exon-sc0000279-1575043694:187554..187942 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1510915933:192247..192530 | TCONS_00017943-exon-sc0000279-1510915933:192247..192530 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1510915933:189209..189365 | TCONS_00017943-exon-sc0000279-1510915933:189209..189365 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1510915933:187554..187942 | TCONS_00017943-exon-sc0000279-1510915933:187554..187942 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1491911889:192247..192530 | TCONS_00017943-exon-sc0000279-1491911889:192247..192530 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1491911889:189209..189365 | TCONS_00017943-exon-sc0000279-1491911889:189209..189365 | Clytia hemisphaerica | exon |
| TCONS_00017943-exon-sc0000279-1491911889:187554..187942 | TCONS_00017943-exon-sc0000279-1491911889:187554..187942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:187554..192530 - |
Blast
BLAST of TCONS_00017943 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.480e-23 Identity = 40/103 (38.83%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 291 IQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLYKSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHHKRKGMWQKRRK 599
++GR A++PV+++ +CG W G G+ +YKSD++ +GG N E F+D+WGGEDWE++DR++Q G+ + R+ FYH +H ++GMW R +
Sbjct: 933 VEGRLAFAPVVMRLSCGSSPR----DPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWSVRSR 1031
The following BLAST results are available for this feature:
|
