TCONS_00017943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017943
Unique NameTCONS_00017943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017943 ID=TCONS_00017943|Name=TCONS_00017943|organism=Clytia hemisphaerica|type=transcript|length=830bp
AAAAGAATCTAAACAAGGATCTTCACCGTTTATCAAATAACCGGACATAC
TTTTTCGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGT
TTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTT
TTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTG
ACGCccatcaaaaatcaatttcgCTGGATGAAATTCTTAGTCAAAATGTT
GGAAGAAACTATTTCAAAAGCTCATGAAACAAATTTGACGATACAAGGAC
GAACAGCGTACAGTCCTGTTTTACTTAAAGAGGCTTGTGGAGAGCATCAA
GAATATACAAATCTAACGGATAGTACTGAATGGCTTGATCTTGGTACCGG
AATGATATCATTGTACAAGTCCGATTGGGAGGAGATAGGAGGTTTTAACG
AGGAGCTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGAT
CGTATGGTGCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTT
TTATCACATACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGT
GAAACGCTTTACGAACACACACACCACAATCAATATTTTTCCATTTCGTT
TTTGTAGCTTTTTGATTAATTATAGCaaaaacaattaacaaaattgatag
CATCACAACACGTTTCACGTAGTTTTACCGTTTCATTGTTGCAACAATAC
ATATCTAGGAAACGGACGTTTACGAGAagtattttcatttcataattttt
tttcatctgaatttttttttcttgattagN
Run BLAST on NCBI

transcript from alignment at sc0000279:187554..192530-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017943 ID=TCONS_00017943|Name=TCONS_00017943|organism=Clytia hemisphaerica|type=transcript|length=4977bp|location=Sequence derived from alignment at sc0000279:187554..192530- (Clytia hemisphaerica)
AAAAGAATCTAAACAAGGATCTTCACCGTTTATCAAATAACCGGACATAC
TTTTTCGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGT
TTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTT
TTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTG
ACGCCCATCAAAAATCAATTTCGCTGGATGAAATTCTTAGTCAAAATGTT
GGAAGAAACTATTTCAAAAGCTCATGAAACAAATGTAAGTTAAAAACTGC
TACATTTTTGATGAAATAAAAACCATAGTATCAGTAATCCGGTAAGTATC
CTTTAGCTAAATGGGAATAAAATGGAAGTTGTCAATCTGTGTTGTTCATA
GTTTAGAAAATCAGTTATTCCATTGGAGATGAGAATTTTTTGATGGGGAT
GTTAGATGGAGATGTGACAGATGATTGTAAAAGCATTTTATTGTCTAGCC
TATGATAATAAATCAGGAATTTTGGGTAGTCTTTTTCGAAATCTTAAGTA
CGGGCGAGATACCCTGAGTATCAGAGGTTAGTTTTTCAAAGAAAGTAGTA
ACCTCTGAAGACAAATATTAGAAATTTTATCGCGCATGTGTCAATCTAAT
CACTGTAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATGTC
TAGCAGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCATGGTTACTTTTGTCTTCGCTGATTGCGCGATGAATAGAAT
CTCGATTCGTCGGCACAGCGTAAATATATGATTTTGAGCTGTGCTTTTCA
CGGTACGGGCGAGAATTATGTGGTTTCAGCCGTTCAACTTTCATTTGGCT
TTTCGATTTTGCAGGAATCTAGTGGCTTTCAGGCTATATCATCAGCGTTA
TTAAAGCTTGAGCTTGTGTATCCCCGAAATCCTATGGTCTTAAGACGAAA
GTCTATCGTTAAAACTCTATTTTTGACCCAAGTCAATGCACTTCAAAATC
GTTTGTGTTTTTCTTTAATTTGACTTTGAATTCCCCTTTTTAACATAAAT
ATTCCGACTTTGATTGTAGGATCATGGTGGTGAAATAAAATAAATCATCT
CGTTATTGTGTCGATGCATGTAATTAGTAATAGGCATTATGATGATGTAA
TAGTATCTTTCTATCTCCACAAAAGAATATCTTGTTCCATCATGGTATTT
TTAAATTATCGATGATAATTAAGATAATTATCAATTAACTCGTTTTTATT
GTATGTCATATATGATGGGCCACCGCAGTTATCCCATTCGTTTTCAGGTG
AACTTAATACTGGTTGATTACAACAGTACTGACGGTGACTACGAATCCAT
TCTCAAGAAGAGTAAATTGAATTATACCTATCTCAATCCAGTCAAGATAG
AACAGCAACAGATGAAATTCAGTAAAGTCAGAGCATTGAATTATAATATC
AAAAGTGTGAAAGATTCAAATAGTATTATATTTGTTCTGGACCTTCATTT
GATATTACCTTCTAATATGTTCGATCGGATAAGAAAAGTAAGTTCTTTGA
CCCACTACAATATCGGTCAAAATAGTATATTGAGAGTTTATCGGTCAACC
AGTATATTGAGAGTTTTGGTTAATTCCTCGTTTTCAGAAGCTCGGGCGAG
AAAGTGACTTTTAGGCTATTTCTTAGCTTTAATAGAATATTTCAATTTGG
TTGGGGTTTATAGACTTCCAGGCAATATTTTAAGCCCTATTGGGCCGTTC
TTGTACTTTTGGATATCCTCAGATTCTAAAGTCTTAAGTCTTATGTTACA
ACTCAGAGTTAAAACTCTACCCTTCCAACCCAAGTTAGAGCGATCGATTG
TGGCTATAAGATTTTGTGGGAATTTCCATTTCCATGTTATGACCGGTATT
GTACCCACTAGTCCATATTAGTTACCAAAACGAACATCAGTTTTTTCAGA
TGCCTCCTAGGTAATTTTGGTTTCCAAAAATTCTCATCTCTCAATATTTA
TTCCAATCTTCAGTTTAGGCTGCTTGCATCCTCTAATGGAATACGATTGA
ATTTTGCATAGTTCTGCGATTCTTCTATTGGAAATTTTAAAATTAGAGTT
CCGTTGCTTTTATAAAGAATTAGATAGATAGATATGCCCTNGAAATTAGA
GTTTCGTTGCTTTTATAAAGAATTAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATATGCCCTCCGATGCATCGGAATGGGTCCTACC
CACGGTGGAGTAAGAATCACAGCGCAAGCAGACACTCGAACTACACGGGA
GAACGGATGTCCTCGCATATGTAGAACCTCCTGAGTATCACGGCACACCA
CAATGTCTGAAATATCTACCCATACTCTTGTATCAGAGTTATGGTACCCA
ATTCCCCTCACATGGCATGGGTTGACCCGGGCGAAGGAGCATTCACTTGT
CAAGTGAATCGTGGTGCCACGGTGGGTATCGAACTCGAGCCTCCTGGACA
GAAGTCAAGCACGATAACCACTACACCACTACGCCTTTTATAAAGAATTA
GCATTAACATAGTGGTTAGTGTCACGAAGTTTCGATGGTGAAATTGATCA
CGTGAAGGAATTTTGGAACTTTTATAAATTCCTAATCTTTATGAATTTTC
CTTTTTTCCATTCAGTTGACGATACAAGGACGAACAGCGTACAGTCCTGT
TTTACTTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTAACGG
ATAGTACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTACAAG
TCCGATTGGGAGGAGATAGGAGGTATGAAAAACCCAATGAGAGTACATTG
CAGGCCCAGCGAAAGTGGGGAGACTGAGGAGACTTTAGCCTCCCCACTTT
GAGCAAATGAGATCTTTTTCTCGGATTCCTAGCAAATTTTATCCCATTTT
GAGTCTTCAGCATCCCCACTCTCATGGTTGTTCCGTCGGGCCTGATCGAC
TATCTTTATTTATAGTTACTAGCCATTGGGTTGCTAAAACGCAAACTGGT
GCCCGTGTATCACAAGCTTTATTCGTGTTACTAAAGGACACCAGAGAACA
TCATCTGCCGTTTTCAGAAAGCATCAAAAAGCCAATATAATACACAGGGA
ACGAGGTGGTCCCAAACGGTAGTCTGAATTGCTAGAGGATGAGCAGAAGC
CTACACAAACGGGGGCTTATTTTGTCATATCACAAAAGCTCTCTCCTCTA
GCAGCTTTTTATAGCTCTAGTTAAAAGAAACATTGAGTTTCTACGTCACA
AAAAGAAGTCTGATCCGTTATTCTGAAACATGATTCTCCAATGTTACCTT
TGAAATGCTGCTCGTGCGTCTAAGAATACATTAATAGCATTTTTCTTCTT
ACACACAGGCAGACTTTTGCTTTGTTGGGGTAGGCTAGCAAATAACAAAA
TTCTGACCAAGGAATAATTTTCATGTCTTTGATTGGCCGCGTATTACAAT
TGTTGACCAGTTTACGTATAAAACCATTTACTATATTCAATTATGGACAA
AACATTTGAGACAAAGGGAATTTCCCGGTGAAAATTTAAACACCACAAAT
GATTTTTAAGGTCTTAAGGGCTCTGGTCATAGCGAAAAATCAATTTCAGA
TTTTAAAGGAAAGATACTTCCATAAAAATTTTTCAATATTGTATTTTTAG
ATACTAAATAGATACATCACCTGAACCAAAAAAAATTCCAAAATGTTTGA
TTTTTACCGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAA
AAACTCTTCGTTTTCTTCTTCATTTAATTTTTTCATTTCAATTTTTCGAT
TTTTAAATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAATTATA
CATTAATGTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATC
GAAAAATTGTCCAGAGCCCTTAAACTACAGTTTAAATACACTTTCGACCA
TGATTGTAGTAACAAAACATATTTTCTCGATTGATTAGGTTTTAACGAGG
AGCTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGATCGT
ATGGTGCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTTTTA
TCACATACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGAA
ACGCTTTACGAACACACACACCACAATCAATATTTTTCCATTTCGTTTTT
GTAGCTTTTTGATTAATTATAGCAAAAACAATTAACAAAATTGATAGCAT
CACAACACGTTTCACGTAGTTTTACCGTTTCATTGTTGCAACAATACATA
TCTAGGAAACGGACGTTTACGAGAAGTATTTTCATTTCATAATTTTTTTT
CATCTGAATTTTTTTTTCTTGATTAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010056XLOC_010056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017943-exon-sc0000279-1575043694:192247..192530TCONS_00017943-exon-sc0000279-1575043694:192247..192530Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1575043694:189209..189365TCONS_00017943-exon-sc0000279-1575043694:189209..189365Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1575043694:187554..187942TCONS_00017943-exon-sc0000279-1575043694:187554..187942Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1510915933:192247..192530TCONS_00017943-exon-sc0000279-1510915933:192247..192530Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1510915933:189209..189365TCONS_00017943-exon-sc0000279-1510915933:189209..189365Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1510915933:187554..187942TCONS_00017943-exon-sc0000279-1510915933:187554..187942Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1491911889:192247..192530TCONS_00017943-exon-sc0000279-1491911889:192247..192530Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1491911889:189209..189365TCONS_00017943-exon-sc0000279-1491911889:189209..189365Clytia hemisphaericaexon
TCONS_00017943-exon-sc0000279-1491911889:187554..187942TCONS_00017943-exon-sc0000279-1491911889:187554..187942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:187554..192530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0557108	0	0	0.154086	0.243522	0.366718	0.241046	0.381495	0	0	0.0501093	0.553791	0.394179	0.820302	0.437708	0	0.116214	0.442324	0.792568	0.272359	0	0	0.0978597	0.227233	0.143582	0.561324	0.328537	0.12682	0
Blast
[Close]
BLAST of TCONS_00017943 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.480e-23
Identity = 40/103 (38.83%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  291 IQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLYKSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHHKRKGMWQKRRK 599
            ++GR A++PV+++ +CG             W   G G+  +YKSD++ +GG N E F+D+WGGEDWE++DR++Q G+ +   R+  FYH +H ++GMW  R +
Sbjct:  933 VEGRLAFAPVVMRLSCGSSPR----DPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWSVRSR 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00017943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN42.480e-2338.83N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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