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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017903 ID=TCONS_00017903|Name=TCONS_00017903|organism=Clytia hemisphaerica|type=transcript|length=895bp
AGTTTCTCGAGAAAGATGTCAAGCCAGCTTTGAGGATGCCATAATTACAC
AAAACATGATGTGTGCTGCTGCGAGTAGAACTGATGCTTGCCAGGGTGAC
AGTGGAGGTCCAATGGTTTTTAATCAAAGAGATGCAAATGGTCTTGATCA
GTTTTATCTGGCCGGTATTATAAGTTGGGGAAGAGGATGTGCTCGGCCAG
ATTTCCCAGGAGTATACACAAATGTGGCTAATCTTCGTGAGTGGATTGAT
GAAATTGTAAATGCTGACCAAGAAGCTACAATTGAAACACCTGAAGTTAC
TGAACCATCTGAAACAATTGACACCACTGAAGATGTTGTtccatttttcc
aattcttcAGTCAAAGAAACAGAGATCACTTTTACACATACAATCAAAGA
GAAGCTACCCGAAGATACAGATTGAAGAGAAATAACAATGTTGTCTGTAG
GATCTTAAGAAGGGCCTTACCGGAAGGAACAAGACCATTGTATAGATATT
TTGATGGAAGTCATAGAAGAAGGAGCAGAACTTTGAATGATCATTTTATG
ACTACAAATGAGGCAGAAACGCGAAGTACTGAATTCAGAAGCTACAGAAG
GCGAAGTATTGCTGGATATTGTTTTACATCGCAAAAATCAGATACTCTTC
CTTTACACCGCTATCATCTGAAGACTGGAAACGTTAGAGACCACTATTAT
ACTACTGAAGAGAATGGTCCTCAAGGTTACACTCTCGATGATTTTACCGA
TCCTTGTTACGTTTATCCGGCATAAATAgcggccattccattttatatcc
atacagggggtggacgaacactTTGAGAGGGTAATCGAAGAAGAATTTCC
GGGGGGTATGACgcagtattttttattttattccttAAATTtcta Run BLAST on NCBI protein sequence of TCONS_00017903-protein >TCONS_00017903-protein ID=TCONS_00017903-protein|Name=TCONS_00017903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
VSRERCQASFEDAIITQNMMCAAASRTDACQGDSGGPMVFNQRDANGLDQ
FYLAGIISWGRGCARPDFPGVYTNVANLREWIDEIVNADQEATIETPEVT
EPSETIDTTEDVVPFFQFFSQRNRDHFYTYNQREATRRYRLKRNNNVVCR
ILRRALPEGTRPLYRYFDGSHRRRSRTLNDHFMTTNEAETRSTEFRSYRR
RSIAGYCFTSQKSDTLPLHRYHLKTGNVRDHYYTTEENGPQGYTLDDFTD
PCYVYPA Run BLAST on NCBI transcript from alignment at sc0000279:59171..62100+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017903 ID=TCONS_00017903|Name=TCONS_00017903|organism=Clytia hemisphaerica|type=transcript|length=2930bp|location=Sequence derived from alignment at sc0000279:59171..62100+ (Clytia hemisphaerica)
AGTTTCTCGAGAAAGATGTCAAGCCAGCTTTGAGGATGCCATAATTACAC
AAAACATGATGTGTGCTGCTGCGAGTAGAACTGATGCTTGCCAGGTACAT
CTTTCTTTTTTACAATTGACGGAGATATGTAAATAAACTACTCCTAACAC
TCAACTATTTCTTTtgaatgataatattttgataataaatcattttcatt
cgaAGAAACATATTATTTGTTGCATTATATAGGAAAAGGTTGCCATTGAA
GGTTTTTTTCAAAGATCTCAACAACTATATCCCAGATTTTTAAgtgaatt
aaatttcgcgtggattaattttcacgaCTTTCGCgagttttggccctttt
cgcgaaaattagtcctcgcgaaatattcaaaatcaggattttggccaaaa
cccctaggaaatTGAACGAATTTGGGTGAAAAAGTGCGGACACTTTTTAT
CCACGCGAAACTTTTGGATTCTCAATTCGCGAAAAAAAGTTCACGCGAAA
TTATATCGTCCtttgaaatattgaatattattttcagGGTGACAGTGGAG
GTCCAATGGTTTTTAATCAAAGAGATGCAAATGGTCTTGATCAGTTTTAT
CTGGCCGGTATTATAAGTTGGGGAAGAGGATGTGCTCGGCCAGATTTCCC
AGGAGTATACACAAATGTGGCTAATCTTCGTGAGTGGATTGATGAAATTG
TAAATGCTGACCAAGAAGCTACAATTGAAACACCTGAAGTTACTGAACCA
TCTGAAACAATTGACACCACTGAAGGTATCTCTCAACCTTTAcctaaccc
agctggcacacaacgttgtttcaacgttcagctagcgttatatggatgtt
gtgaacgttagataaacgttgaaacaacgttgtgtgtcagctgggaaacG
TCCAAATTACGTATATCCGAAAACTTACTCTTTCTATGACATTATATATC
AACTTTATAGCAACTATCTTTGATGCATaacattaaagggacataacagt
acttgcgaaatttgtaaacaaactgtatgcagcgggatacaaaatcaaaa
caaatatcacatgtcaaaataaaaaaccaaaccaaatatggctaattttg
attgttcaattgttttacaagtttgttttggacacgtaattttaattgtt
ctctttaatgaaacgtggttcgcgcaatgtttacatttttctacttttat
gtccctttaagtgaATCAATTTACGCGAGGATTATAtagtttttcgaaaa
aatcccaaaaattaatgatcgtgaaaatttcaaaaccaggaattttgcca
aaaatcttATATCTTTTGCAAAAAACCTCTAgggaaatgaaagaaattag
taGAAAAAGAGAcgaacatgaaaatgaaaagattcTTATTGGATAGCACT
TAGACTTCAAAATTCGCTCTACCTTACATTCGTCACAAAAACTGCTTTAG
AAAATTCCAGCTTCCTTTATACTAACTACCAGCTTTTTCATTTCCTTTGT
CCTAGATGTTGTtccatttttccaattcttcAGTCAAAGAAACAGAGATC
ACTTTTACACATACAATCAAAGAGAAGCTACCCGAAGATACAGATTGAAG
AGAAATAACAATGTTGTCTGTAGGATCTTAAGAAGGGCCTTACCGGAAGG
AACAAGACCATTGTATAGATATTTTGATGGAAGTCATAGAAGAAGGAGCA
GAACTTTGAATGATCATTTTATGACTACAAATGAGGCAGAAACGCGAAGT
AAGTGAATGATTATATTTTTACGACATATTTAAAAGTTACACCGGGTGGG
TCAAAAAAACGCAACatatattttttggtttttatcttcaaatcgcttaa
agatataaaaatggatttttacattgttcccgtttcatatcagacacata
tttcatatcaggactgtgtctgttatattatgctggtataagcaaaaaaa
tgtttttctgttCTTCTTTTTGACCAATTCTGGCTCCATATtaatgtcaa
tccaatgtgaaaaagcttttgaattaagattgacgagtaagcaaacgatg
tcactcttatttaaaaacaaaacctttaagcaaCCGTAGTGCAAAGCTAC
AGCATTTGGCTACGGTGCTCCGATCTCACTTTTCATACACAGATACAACG
TAAATAATGTTACAGATTCTATAAGGCTATAAAGAAATTTATATTTAGCA
CCGTAGCTTAAAGTAAAACATTAAGTTACTCTGTCGTCACATGTAATATT
TCGGAGCTACTCGGTTTTATTGTGTTGATTTCTGCGTCCTGATGTGGGGA
AAATTTAACAAAGAGGCTGTGTTTTACTAGAATACGATACATTGAAAATA
AGTGGCGATATTAATCCTGGCATGCATAAATTTCTAAATATTAATCTGAT
TAGTCGAAAATCAGAGCATTTTTAAAGACAAACAGCTTGAAATTCTACAC
GAACCAACCAAGATTCGataacttcaatattttttctagATCCTACTCGG
AATCTTTCTGAAGTTGTTttgtgaaattgttttgtttttcaagaGAACGA
TCTTcgtctttgttttgatattctaTTGAAAATTAATATTCCTTGCTTCG
ACTTTTGTAGGTACTGAATTCAGAAGCTACAGAAGGCGAAGTATTGCTGG
ATATTGTTTTACATCGCAAAAATCAGATACTCTTCCTTTACACCGCTATC
ATCTGAAGACTGGAAACGTTAGAGACCACTATTATACTACTGAAGAGAAT
GGTCCTCAAGGTTACACTCTCGATGATTTTACCGATCCTTGTTACGTTTA
TCCGGCATAAATAgcggccattccattttatatccatacagggggtggac
gaacactTTGAGAGGGTAATCGAAGAAGAATTTCCGGGGGGTATGACgca
gtattttttattttattccttAAATTtcta Coding sequence (CDS) from alignment at sc0000279:59171..62100+ >TCONS_00017903 ID=TCONS_00017903|Name=TCONS_00017903|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000279:59171..62100+ (Clytia hemisphaerica)
GTTTCTCGAGAAAGATGTCAAGCCAGCTTTGAGGATGCCATAATTACACA
AAACATGATGTGTGCTGCTGCGAGTAGAACTGATGCTTGCCAGGGTGACA
GTGGAGGTCCAATGGTTTTTAATCAAAGAGATGCAAATGGTCTTGATCAG
TTTTATCTGGCCGGTATTATAAGTTGGGGAAGAGGATGTGCTCGGCCAGA
TTTCCCAGGAGTATACACAAATGTGGCTAATCTTCGTGAGTGGATTGATG
AAATTGTAAATGCTGACCAAGAAGCTACAATTGAAACACCTGAAGTTACT
GAACCATCTGAAACAATTGACACCACTGAAGATGTTGTtccatttttcca
attcttcAGTCAAAGAAACAGAGATCACTTTTACACATACAATCAAAGAG
AAGCTACCCGAAGATACAGATTGAAGAGAAATAACAATGTTGTCTGTAGG
ATCTTAAGAAGGGCCTTACCGGAAGGAACAAGACCATTGTATAGATATTT
TGATGGAAGTCATAGAAGAAGGAGCAGAACTTTGAATGATCATTTTATGA
CTACAAATGAGGCAGAAACGCGAAGTACTGAATTCAGAAGCTACAGAAGG
CGAAGTATTGCTGGATATTGTTTTACATCGCAAAAATCAGATACTCTTCC
TTTACACCGCTATCATCTGAAGACTGGAAACGTTAGAGACCACTATTATA
CTACTGAAGAGAATGGTCCTCAAGGTTACACTCTCGATGATTTTACCGAT
CCTTGTTACGTTTATCCGGCATAAGTTTCTCGAGAAAGATGTCAAGCCAG
CTTTGAGGATGCCATAATTACACAAAACATGATGTGTGCTGCTGCGAGTA
GAACTGATGCTTGCCAGGGTGACAGTGGAGGTCCAATGGTTTTTAATCAA
AGAGATGCAAATGGTCTTGATCAGTTTTATCTGGCCGGTATTATAAGTTG
GGGAAGAGGATGTGCTCGGCCAGATTTCCCAGGAGTATACACAAATGTGG
CTAATCTTCGTGAGTGGATTGATGAAATTGTAAATGCTGACCAAGAAGCT
ACAATTGAAACACCTGAAGTTACTGAACCATCTGAAACAATTGACACCAC
TGAAGATGTTGTtccatttttccaattcttcAGTCAAAGAAACAGAGATC
ACTTTTACACATACAATCAAAGAGAAGCTACCCGAAGATACAGATTGAAG
AGAAATAACAATGTTGTCTGTAGGATCTTAAGAAGGGCCTTACCGGAAGG
AACAAGACCATTGTATAGATATTTTGATGGAAGTCATAGAAGAAGGAGCA
GAACTTTGAATGATCATTTTATGACTACAAATGAGGCAGAAACGCGAAGT
ACTGAATTCAGAAGCTACAGAAGGCGAAGTATTGCTGGATATTGTTTTAC
ATCGCAAAAATCAGATACTCTTCCTTTACACCGCTATCATCTGAAGACTG
GAAACGTTAGAGACCACTATTATACTACTGAAGAGAATGGTCCTCAAGGT
TACACTCTCGATGATTTTACCGATCCTTGTTACGTTTATCCGGCATAAGT
TTCTCGAGAAAGATGTCAAGCCAGCTTTGAGGATGCCATAATTACACAAA
ACATGATGTGTGCTGCTGCGAGTAGAACTGATGCTTGCCAGGGTGACAGT
GGAGGTCCAATGGTTTTTAATCAAAGAGATGCAAATGGTCTTGATCAGTT
TTATCTGGCCGGTATTATAAGTTGGGGAAGAGGATGTGCTCGGCCAGATT
TCCCAGGAGTATACACAAATGTGGCTAATCTTCGTGAGTGGATTGATGAA
ATTGTAAATGCTGACCAAGAAGCTACAATTGAAACACCTGAAGTTACTGA
ACCATCTGAAACAATTGACACCACTGAAGATGTTGTtccatttttccaat
tcttcAGTCAAAGAAACAGAGATCACTTTTACACATACAATCAAAGAGAA
GCTACCCGAAGATACAGATTGAAGAGAAATAACAATGTTGTCTGTAGGAT
CTTAAGAAGGGCCTTACCGGAAGGAACAAGACCATTGTATAGATATTTTG
ATGGAAGTCATAGAAGAAGGAGCAGAACTTTGAATGATCATTTTATGACT
ACAAATGAGGCAGAAACGCGAAGTACTGAATTCAGAAGCTACAGAAGGCG
AAGTATTGCTGGATATTGTTTTACATCGCAAAAATCAGATACTCTTCCTT
TACACCGCTATCATCTGAAGACTGGAAACGTTAGAGACCACTATTATACT
ACTGAAGAGAATGGTCCTCAAGGTTACACTCTCGATGATTTTACCGATCC
TTGTTACGTTTATCCGGCATAAGTTTCTCGAGAAAGATGTCAAGCCAGCT
TTGAGGATGCCATAATTACACAAAACATGATGTGTGCTGCTGCGAGTAGA
ACTGATGCTTGCCAGGGTGACAGTGGAGGTCCAATGGTTTTTAATCAAAG
AGATGCAAATGGTCTTGATCAGTTTTATCTGGCCGGTATTATAAGTTGGG
GAAGAGGATGTGCTCGGCCAGATTTCCCAGGAGTATACACAAATGTGGCT
AATCTTCGTGAGTGGATTGATGAAATTGTAAATGCTGACCAAGAAGCTAC
AATTGAAACACCTGAAGTTACTGAACCATCTGAAACAATTGACACCACTG
AAGATGTTGTtccatttttccaattcttcAGTCAAAGAAACAGAGATCAC
TTTTACACATACAATCAAAGAGAAGCTACCCGAAGATACAGATTGAAGAG
AAATAACAATGTTGTCTGTAGGATCTTAAGAAGGGCCTTACCGGAAGGAA
CAAGACCATTGTATAGATATTTTGATGGAAGTCATAGAAGAAGGAGCAGA
ACTTTGAATGATCATTTTATGACTACAAATGAGGCAGAAACGCGAAGTAC
TGAATTCAGAAGCTACAGAAGGCGAAGTATTGCTGGATATTGTTTTACAT
CGCAAAAATCAGATACTCTTCCTTTACACCGCTATCATCTGAAGACTGGA
AACGTTAGAGACCACTATTATACTACTGAAGAGAATGGTCCTCAAGGTTA
CACTCTCGATGATTTTACCGATCCTTGTTACGTTTATCCGGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017903-exon-sc0000279-1491911889:59171..59264 | TCONS_00017903-exon-sc0000279-1491911889:59171..59264 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1510915933:59171..59264 | TCONS_00017903-exon-sc0000279-1510915933:59171..59264 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1575043694:59171..59264 | TCONS_00017903-exon-sc0000279-1575043694:59171..59264 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1491911889:59708..59945 | TCONS_00017903-exon-sc0000279-1491911889:59708..59945 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1510915933:59708..59945 | TCONS_00017903-exon-sc0000279-1510915933:59708..59945 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1575043694:59708..59945 | TCONS_00017903-exon-sc0000279-1575043694:59708..59945 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1491911889:60676..60918 | TCONS_00017903-exon-sc0000279-1491911889:60676..60918 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1510915933:60676..60918 | TCONS_00017903-exon-sc0000279-1510915933:60676..60918 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1575043694:60676..60918 | TCONS_00017903-exon-sc0000279-1575043694:60676..60918 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1491911889:61781..62100 | TCONS_00017903-exon-sc0000279-1491911889:61781..62100 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1510915933:61781..62100 | TCONS_00017903-exon-sc0000279-1510915933:61781..62100 | Clytia hemisphaerica | exon |
| TCONS_00017903-exon-sc0000279-1575043694:61781..62100 | TCONS_00017903-exon-sc0000279-1575043694:61781..62100 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:59171..62100 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00017903 vs. Swiss-Prot (Human)
Match: TM11E (Transmembrane protease serine 11E OS=Homo sapiens GN=TMPRSS11E PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 7.249e-19 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 2
Query: 26 SFEDAIITQNMMCAAA--SRTDACQGDSGGPMVFNQRDANGLDQFYLAGIISWGRGCARPDFPGVYTNVANLREWI 247
++ DAI T M+CA + +TDACQGDSGGP+V ++ D +YLAGI+SWG CA+P+ PGVYT V LR+WI
Sbjct: 347 AYNDAI-TPRMLCAGSLEGKTDACQGDSGGPLV----SSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWI 417
The following BLAST results are available for this feature:
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