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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017881 ID=TCONS_00017881|Name=TCONS_00017881|organism=Clytia hemisphaerica|type=transcript|length=3459bpRun BLAST on NCBI protein sequence of TCONS_00017881-protein >TCONS_00017881-protein ID=TCONS_00017881-protein|Name=TCONS_00017881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=773bp MVDDIQIGMMQSTNQTNLTQNQIQRRVPGGMTSLQHDVEKIKSGSCGGSKRun BLAST on NCBI transcript from alignment at sc0000278:331024..347519- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017881 ID=TCONS_00017881|Name=TCONS_00017881|organism=Clytia hemisphaerica|type=transcript|length=16496bp|location=Sequence derived from alignment at sc0000278:331024..347519- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000278:331024..347519- >TCONS_00017881 ID=TCONS_00017881|Name=TCONS_00017881|organism=Clytia hemisphaerica|type=CDS|length=37152bp|location=Sequence derived from alignment at sc0000278:331024..347519- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017881 vs. Swiss-Prot (Human)
Match: RNF10 (RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2) HSP 1 Score: 313.153 bits (801), Expect = 5.996e-91 Identity = 201/536 (37.50%), Postives = 297/536 (55.41%), Query Frame = 3
Query: 852 LLNFHYMPLRTHNTISGRISSSYHGYRRKRTT----TFNKEAFLQANCQFVVDYDVEKYSIHSADPDVLVDWNAIQLVYFPMHEEPSCPICLYPPTAAKMTRCGHVYCWACILHYLSLSEKSWNKCPICHEAVHEKDLKSVVPVVQNKFSRNGTIKMKLMRR--------PKNSLMTYXXXXXXXXXXXXXFSIWNGEIPSFKLTLATQDIMIDNLLNRERIELLAQLSEAKQEQSGEETFIEMAISKVETKIQESRLEQGKKLAKIEQVAHQGTSNPGRYEGESNLANLLASQVPNQRK-----LDAFSDDEHADEKEFVIEKETEIPESLLLQSPSPVKXXXXXXXXXXXXIDHDERKSRNSASSSTDGSVV--EGHSDLTAYPKNNNYYYFYQAEDGQNIFINSLNARCLIEEYGSLENSPKRIIGQILDFESHTMTRELRKRYRYLSHLPVSCEFVICELMLRPPVLSKQTIHNFMGEFKKRRTARFKKVEEQRKHDMRANAELSREAGFRVYNDYTEDIQIDLSDLTDFPS 2402
LLNF + P +G S HG KR FNKE FLQANCQFVV D + Y+ H ADPD LV+W+ ++ V HE PSCPICLYPPTAAK+TRCGH++CWACILHYLSLSEK+W+KCPIC+ +VH+KDLKSVV +++ TI M+LM+R PK+ M + + + +++S KL LA+++ ++ ++ E++ L QL+E K + E FIE A IQE + + + L+ + + T E +A L V RK L AF ++ + +P ++ S + E D + D K + S+ + G + L++ P YYFYQAEDGQ++F++ +N RCL+ EYGSLE SP++I +++ ++M+ ++R+R+RYLSHLP++CEF ICEL L+PPV+SK+T+ F + +KR+ R KK E+R+ + R E +++ G Y E + I L +L FP+
Sbjct: 143 LLNFTFEP----RGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSED-QDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYS---------KLLLASKEQVLHRVVLEEKVALEQQLAEEKH--TPESCFIEAA-------IQELKTRE-EALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGFTRLSSSP----CYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEENKKQG-----KYPE-VHIPLENLQQFPA 644 The following BLAST results are available for this feature:
BLAST of TCONS_00017881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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