TCONS_00017881-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017881-protein
Unique Name	TCONS_00017881-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	773

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017881-protein ID=TCONS_00017881-protein|Name=TCONS_00017881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=773bp
MVDDIQIGMMQSTNQTNLTQNQIQRRVPGGMTSLQHDVEKIKSGSCGGSK
PLSRKSGRNNKGTSWNNKRELSTKASKKNGSKFDPEDKPFQKNSFQSAES
LLNFHYMPLRTHNTISGRISSSYHGYRRKRTTTFNKEAFLQANCQFVVDY
DVEKYSIHSADPDVLVDWNAIQLVYFPMHEEPSCPICLYPPTAAKMTRCG
HVYCWACILHYLSLSEKSWNKCPICHEAVHEKDLKSVVPVVQNKFSRNGT
IKMKLMRRPKNSLMTYNMENEESNIEENEFSIWNGEIPSFKLTLATQDIM
IDNLLNRERIELLAQLSEAKQEQSGEETFIEMAISKVETKIQESRLEQGK
KLAKIEQVAHQGTSNPGRYEGESNLANLLASQVPNQRKLDAFSDDEHADE
KEFVIEKETEIPESLLLQSPSPVKSEASALEEDSESIDHDERKSRNSASS
STDGSVVEGHSDLTAYPKNNNYYYFYQAEDGQNIFINSLNARCLIEEYGS
LENSPKRIIGQILDFESHTMTRELRKRYRYLSHLPVSCEFVICELMLRPP
VLSKQTIHNFMGEFKKRRTARFKKVEEQRKHDMRANAELSREAGFRVYND
YTEDIQIDLSDLTDFPSNLSPDEPLIASASVATSNNNYIEQFPPTNAGMD
VDSESASFAQKLRVANLSPPSTTKTCWGTASPSNKVGTGIYTRDMRQMSS
TASRNGPSGNDDEDGPDLVAPSLKEMFTAAMVMQSTSVAETDEKKSSSNK
KGKKGKGGGKGTLLFATGAQRKY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010018	XLOC_010018	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017881	TCONS_00017881	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR018957	Znf_C3HC4_RING-type
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 184..225 e-value: 5.1E-8 score: 42.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 184..226 score: 11.796
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 184..229 e-value: 1.26795E-10 score: 57.0704
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 184..225 e-value: 1.2E-6 score: 28.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 175..401 e-value: 1.1E-15 score: 57.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 734..773
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 698..719
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 414..462
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 166..232
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 199..208

Blast

[Close]

BLAST of TCONS_00017881-protein vs. Swiss-Prot (Human)
Match: RNF10 (RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 3.853e-101
Identity = 208/544 (38.24%), Postives = 306/544 (56.25%), Query Frame = 0

Query:  101 LLNFHYMPLRTHNTISGRISSSYHGYRRKRTT----TFNKEAFLQANCQFVVDYDVEKYSIHSADPDVLVDWNAIQLVYFPMHEEPSCPICLYPPTAAKMTRCGHVYCWACILHYLSLSEKSWNKCPICHEAVHEKDLKSVVPVVQNKFSRNGTIKMKLMRR--------PKNSLMTYNMENEESNIEENEFSIWNGEIPSFKLTLATQDIMIDNLLNRERIELLAQLSEAKQEQSGEETFIEMAISKVETK------IQESRLEQGKKLAKIEQVAHQGTSNPGRYEGESNLANLLASQVPNQRK-----LDAFSDDEHADEKEFVIEKETEIPESLLLQSPSPVKSEASALEE---DSESIDHDERKSRNSASSSTDGSVVE-GHSDLTAYPKNNNYYYFYQAEDGQNIFINSLNARCLIEEYGSLENSPKRIIGQILDFESHTMTRELRKRYRYLSHLPVSCEFVICELMLRPPVLSKQTIHNFMGEFKKRRTARFKKVEEQRKHDMRANAELSREAGFRVYNDYTEDIQIDLSDLTDFPS 617
            LLNF + P       +G    S HG   KR       FNKE FLQANCQFVV  D + Y+ H ADPD LV+W+ ++ V    HE PSCPICLYPPTAAK+TRCGH++CWACILHYLSLSEK+W+KCPIC+ +VH+KDLKSVV    +++    TI M+LM+R        PK+  M  +      + + +++S         KL LA+++ ++  ++  E++ L  QL+E K   + E  FIE AI +++T+      +  SR E    +A +EQ+                +A L    V   RK     L AF  DE   E   +      +   L+ +  +  + E   L E   D E  D + ++      SS    + + G + L++ P     YYFYQAEDGQ++F++ +N RCL+ EYGSLE SP++I   +++   ++M+ ++R+R+RYLSHLP++CEF ICEL L+PPV+SK+T+  F  + +KR+  R KK  E+R+ + R   E +++ G      Y E + I L +L  FP+
Sbjct:  143 LLNFTFEP----RGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSED-QDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYS---------KLLLASKEQVLHRVVLEEKVALEQQLAEEK--HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVL--------------MAPLAKESVFQPRKGVLEYLSAF--DEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGFTRLSSSP----CYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEENKKQG-----KYPE-VHIPLENLQQFPA 644

The following BLAST results are available for this feature:

BLAST of TCONS_00017881-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017881-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RNF10	3.853e-101	38.24	RING finger protein 10 OS=Homo sapiens GN=RNF10 PE...	[more]

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TCONS_00017881-protein (polypeptide) - C. hemisphaerica